Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.2e-129 466.5 228 100.0
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 1.1e-111 406.8 228 86.0
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.0e-108 396.0 224 84.4
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 5.8e-108 394.4 224 84.4
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.8e-108 394.4 216 87.5
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 1.4e-106 389.8 216 86.6
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-105 385.6 216 86.1
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 3.5e-105 385.2 228 81.6
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 1.8e-101 372.9 222 82.4
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 3.8e-99 365.2 218 80.7
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 6.4e-99 364.4 219 80.8
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 9.3e-98 360.5 219 79.0
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-96 355.9 219 78.1
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 2.3e-96 355.9 219 78.1
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 8.7e-96 354.0 249 71.9
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 8.1e-94 347.4 237 72.6
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.4e-93 346.7 218 76.6
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 4.5e-92 341.7 227 70.0
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 1.7e-91 339.7 227 69.6
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 2.9e-91 339.0 227 69.6
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 4.9e-91 338.2 213 77.5
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 7.1e-90 334.3 227 68.3
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 7.1e-90 334.3 238 70.2
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 7.1e-90 334.3 227 67.4
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.2e-89 333.6 227 67.8
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 2.1e-89 332.8 221 69.2
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 7.9e-89 330.9 227 67.4
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 1.8e-88 329.7 228 68.0
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 3.9e-88 328.6 227 67.0
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 1.3e-86 323.6 216 69.4
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 2.8e-86 322.4 236 66.1
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 1.8e-85 319.7 230 68.7
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 9.0e-77 290.8 218 61.9
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 6.5e-75 284.6 218 62.4
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 1.4e-74 283.5 216 64.4
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 1.4e-74 283.5 206 64.6
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 2.5e-74 282.7 209 64.6
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 2.5e-74 282.7 219 62.6
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 2.1e-73 279.6 205 63.9
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 2.7e-73 279.3 209 66.0
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 6.1e-73 278.1 203 64.5
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 7.9e-73 277.7 229 60.7
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 1.0e-72 277.3 225 60.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 1.4e-72 276.9 229 61.1
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 1.8e-72 276.6 227 60.4
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.1e-72 275.0 228 59.6
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 8.8e-72 274.2 228 60.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 1.5e-71 273.5 210 63.3
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 3.3e-71 272.3 199 63.3
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 5.7e-71 271.6 225 59.1
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 7.4e-71 271.2 218 60.1
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 9.7e-71 270.8 229 57.6
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 1.3e-70 270.4 229 57.6
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 3.7e-70 268.9 228 58.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 8.2e-70 267.7 229 59.4
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.1e-69 267.3 218 58.3
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 2.4e-69 266.2 207 61.8
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.1e-69 265.4 220 59.5
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 5.3e-69 265.0 221 55.2
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 5.3e-69 265.0 211 60.7
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 6.9e-69 264.6 212 59.0
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 6.9e-69 264.6 212 59.9
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.1e-69 264.2 228 55.7
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.2e-68 263.8 226 56.6
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.6e-68 262.7 208 59.1
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.6e-68 262.7 220 57.7
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.6e-68 262.7 220 57.7
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 3.4e-68 262.3 209 61.7
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.3e-67 260.4 229 55.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 1.7e-67 260.0 172 70.9
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 8.5e-67 257.7 208 61.5
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 1.1e-66 257.3 210 57.6
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 1.9e-66 256.5 226 54.0
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.9e-66 256.5 218 56.4
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-66 255.8 220 57.7
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.2e-66 255.8 220 57.7
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.2e-66 255.8 220 57.7
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 4.2e-66 255.4 200 58.5
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 4.2e-66 255.4 207 60.4
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 9.4e-66 254.2 217 56.2
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 2.1e-65 253.1 212 58.5
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.1e-65 253.1 194 63.4
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 2.1e-65 253.1 214 59.8
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 2.7e-65 252.7 212 58.5
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 2.7e-65 252.7 194 60.3
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 6.1e-65 251.5 229 55.0
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.9e-65 251.1 194 61.9
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.0e-64 250.8 169 67.5
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 1.4e-64 250.4 207 58.5
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 1.4e-64 250.4 209 56.9
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 2.3e-64 249.6 196 58.7
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 3.0e-64 249.2 230 56.1
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 5.1e-64 248.4 228 54.4
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 6.7e-64 248.1 223 55.6
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 2.0e-63 246.5 203 57.6
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 2.0e-63 246.5 198 58.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 3.3e-63 245.7 214 56.5
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 3.3e-63 245.7 223 54.7
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 4.4e-63 245.4 207 57.0
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 7.4e-63 244.6 217 55.3
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 9.7e-63 244.2 216 55.1
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 9.7e-63 244.2 213 56.3
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 1.3e-62 243.8 196 60.2
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 1.7e-62 243.4 212 55.7
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 1.7e-62 243.4 228 51.8
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.8e-62 242.7 205 57.1
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 3.7e-62 242.3 213 55.9
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 3.7e-62 242.3 196 58.7
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 6.3e-62 241.5 213 55.9
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 8.2e-62 241.1 223 53.4
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 2.4e-61 239.6 188 60.1
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 7.0e-61 238.0 216 54.6
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 2.6e-60 236.1 212 55.7
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 3.5e-60 235.7 205 56.1
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 4.5e-60 235.3 211 55.5
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.7e-59 233.4 207 54.6
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 2.9e-59 232.6 217 53.0
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 4.2e-58 228.8 222 51.4
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 7.2e-58 228.0 209 52.6
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 7.2e-58 228.0 189 58.7
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 9.4e-58 227.6 210 52.9
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 4.7e-57 225.3 217 52.1
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 8.0e-57 224.6 209 51.7
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 8.0e-57 224.6 210 53.3
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 1.4e-56 223.8 215 51.2
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.7e-55 218.4 213 50.7
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 1.1e-53 214.2 217 48.8
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 7.7e-52 208.0 172 60.5
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 8.5e-51 204.5 116 82.8
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 1.9e-50 203.4 115 84.3
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 3.2e-50 202.6 218 48.2
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 4.2e-50 202.2 206 49.5
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 7.2e-50 201.4 200 50.0
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 7.2e-50 201.4 210 47.1
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 1.2e-49 200.7 194 50.0
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.1e-49 199.9 212 48.6
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.6e-49 199.1 198 47.5
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 6.8e-48 194.9 194 48.5
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 4.4e-47 192.2 212 48.1
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.8e-45 186.8 175 56.6
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.8e-45 186.8 208 45.7
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 4.5e-44 182.2 138 65.9
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 8.5e-43 177.9 203 46.3
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 8.5e-43 177.9 173 49.7
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 6.1e-41 171.8 218 45.4
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 6.8e-40 168.3 90 87.8
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-39 167.5 110 73.6
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 3.4e-39 166.0 139 56.8
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 7.5e-39 164.9 110 71.8
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 1.7e-38 163.7 227 44.1
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 2.8e-38 162.9 143 53.8
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 3.7e-38 162.5 211 41.7
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.2e-36 157.5 144 52.8
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 8.6e-35 151.4 101 71.3
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 2.5e-34 149.8 172 49.4
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 7.2e-34 148.3 223 37.2
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.0e-32 144.4 112 59.8
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 8.9e-32 141.4 195 37.4
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 1.3e-30 137.5 102 62.7
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 4.9e-30 135.6 111 58.6
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 3.2e-29 132.9 156 46.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 1.3e-27 127.5 89 67.4
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.3e-27 126.7 147 45.6
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 3.9e-27 125.9 129 48.8
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 5.0e-27 125.6 87 67.8
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 8.6e-27 124.8 99 60.6
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.5e-26 124.0 113 54.0
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 6.1e-25 118.6 63 88.9
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 4.9e-22 109.0 77 66.2
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.2e-20 104.4 211 32.7
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 6.0e-20 102.1 107 47.7
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.7e-19 100.5 87 58.6
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 3.0e-19 99.8 84 52.4
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 8.6e-19 98.2 165 33.9
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 4.0e-16 89.4 118 45.8
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.4e-15 86.3 84 54.8
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.8e-12 75.1 64 59.4
C03p90670 Brassica napus HOM05D000138 ORTHO05D032089 6.6e-11 72.0 67 59.7
BolC3t21388H Brassica oleracea HOM05D000901 ORTHO05D032089 3.1e-08 63.2 46 69.6
BcaC07g42528 Brassica carinata HOM05D037012 ORTHO05D039422 7.6e-07 58.5 46 65.2
A08p13530 Brassica napus HOM05D037012 ORTHO05D039422 3.7e-06 56.2 36 77.8


User provided reference genes

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