Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 3.2e-157 558.5 317 100.0
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 2.1e-84 316.6 298 64.1
Carub.0002s2277 Capsella rubella HOM05D008819 ORTHO05D003197 2.5e-77 293.1 315 63.2
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 2.6e-74 283.1 335 60.3
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 2.2e-73 280.0 316 63.0
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 2.5e-72 276.6 317 58.0
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 2.5e-72 276.6 340 56.2
C06p49830 Brassica napus HOM05D008819 ORTHO05D003197 1.3e-70 270.8 340 55.9
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 2.3e-70 270.0 334 55.1
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 2.3e-70 270.0 340 54.4
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 2.5e-64 250.0 325 56.6
CARHR069410 Cardamine hirsuta HOM05D008819 ORTHO05D003197 2.2e-57 226.9 309 50.8
AT1G20100 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 3.3e-53 213.0 323 48.6
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 6.3e-52 208.8 315 44.1
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 6.1e-47 192.2 323 48.6
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 3.1e-43 179.9 343 41.7
BcaC05g25908 Brassica carinata HOM05D008819 ORTHO05D003197 3.5e-42 176.4 316 43.4
C05p18590 Brassica napus HOM05D008819 ORTHO05D003197 3.5e-42 176.4 316 43.4
BolC5t30570H Brassica oleracea HOM05D008819 ORTHO05D003197 2.9e-41 173.3 318 43.1
BraA06t24727Z Brassica rapa HOM05D008819 ORTHO05D003197 2.9e-41 173.3 317 41.6
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 8.5e-41 171.8 319 43.6
A06p16240 Brassica napus HOM05D008819 ORTHO05D003197 1.5e-40 171.0 317 40.1
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 3.2e-40 169.9 319 42.9
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 5.5e-40 169.1 316 42.4
BcaB07g32025 Brassica carinata HOM05D008819 ORTHO05D003197 7.2e-40 168.7 321 41.7
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 3.0e-38 163.3 321 41.4
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 5.5e-32 142.5 314 42.7
BolC3t16044H Brassica oleracea HOM05D008819 ORTHO05D003197 1.0e-30 138.3 222 43.7
Sp1g17870 Schrenkiella parvula HOM05D008819 ORTHO05D003197 4.4e-29 132.9 235 40.4
BcaB03g14340 Brassica carinata HOM05D008819 ORTHO05D003197 7.5e-29 132.1 324 40.4
BcaB03g14414 Brassica carinata HOM05D008819 ORTHO05D003197 4.5e-26 122.9 324 38.9
THA.LOC104813240 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.3e-25 120.6 299 35.8
BcaC01g06727 Brassica carinata HOM05D008819 ORTHO05D003197 2.5e-24 117.1 231 38.1
CARHR020580 Cardamine hirsuta HOM05D008819 ORTHO05D003197 4.7e-23 112.8 188 44.7
C03p37510 Brassica napus HOM05D008819 ORTHO05D003197 2.6e-21 107.1 231 36.4
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 1.0e-17 95.1 247 34.4
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.7e-17 94.4 235 34.9
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 6.6e-17 92.4 234 31.6
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.1e-16 91.7 234 32.9
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.9e-16 90.9 242 34.7
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.5e-16 90.5 329 28.0
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 1.2e-15 88.2 267 33.0
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 2.3e-14 84.0 245 32.2
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 3.0e-14 83.6 243 31.3
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.8e-14 82.4 232 30.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 8.9e-14 82.0 231 29.9
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.9e-14 82.0 232 30.2
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 8.9e-14 82.0 262 27.5
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.5e-13 81.3 227 32.6
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 2.0e-13 80.9 266 27.8
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 2.0e-13 80.9 268 31.7
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.6e-13 80.5 246 30.9
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 4.4e-13 79.7 227 33.5
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 5.7e-13 79.3 255 28.2
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 5.7e-13 79.3 245 32.2
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.3e-12 78.2 253 29.6
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.7e-12 77.8 227 33.9
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 2.2e-12 77.4 242 28.9
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 2.2e-12 77.4 252 31.7
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 6.4e-12 75.9 239 30.5
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 1.1e-11 75.1 250 32.4
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.4e-11 74.7 259 30.9
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.8e-11 74.3 246 27.6
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 1.8e-11 74.3 241 32.8
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-11 73.9 264 29.2
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 3.2e-11 73.6 327 26.6
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.1e-11 73.2 264 28.8
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 9.2e-11 72.0 244 27.9
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 9.2e-11 72.0 245 34.3
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.2e-10 71.6 279 28.3
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 1.2e-10 71.6 252 33.7
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.7e-10 70.5 242 31.8
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 3.5e-10 70.1 261 28.7
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 5.9e-10 69.3 241 28.6
BcaC03g14371 Brassica carinata HOM05D008819 ORTHO05D003197 7.8e-10 68.9 133 42.1
C02p17840 Brassica napus HOM05D008819 ORTHO05D003197 7.8e-10 68.9 133 42.1
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 7.8e-10 68.9 251 31.9
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.0e-09 68.6 257 30.4
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 1.3e-09 68.2 281 29.2
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 1.7e-09 67.8 276 30.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.0e-09 67.0 253 30.0
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 3.9e-09 66.6 321 28.0
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 6.6e-09 65.9 334 32.9
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 6.6e-09 65.9 325 34.8
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-08 65.1 252 30.6
A08p16950 Brassica napus HOM05D008819 ORTHO05D003197 1.9e-08 64.3 117 40.2
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 3.3e-08 63.5 262 29.8
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 4.3e-08 63.2 284 28.9
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 7.3e-08 62.4 238 28.6
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 9.5e-08 62.0 286 28.0
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 9.5e-08 62.0 262 27.5
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 9.5e-08 62.0 280 28.2
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 2.1e-07 60.8 112 33.9
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 2.1e-07 60.8 311 23.5
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 2.1e-07 60.8 254 27.2
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 2.1e-07 60.8 248 27.8
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 4.7e-07 59.7 288 29.2
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 6.2e-07 59.3 258 28.3
CARHR069790 Cardamine hirsuta HOM05D014797 ORTHO05D016596 8.0e-07 58.9 113 37.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.1e-06 58.5 255 29.0
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.4e-06 58.2 223 30.5
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 3.1e-06 57.0 250 31.2
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 5.2e-06 56.2 238 30.3
A07p41800 Brassica napus HOM05D014797 ORTHO05D016596 6.8e-06 55.8 64 50.0
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 8.9e-06 55.5 236 27.1
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 8.9e-06 55.5 253 27.3


User provided reference genes

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