Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.7e-108 396.0 197 100.0
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 5.0e-100 367.9 197 90.9
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 4.6e-93 344.7 198 85.9
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 4.6e-93 344.7 198 85.9
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 5.0e-92 341.3 198 84.8
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 7.3e-91 337.4 197 84.3
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 7.3e-91 337.4 197 83.8
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 9.5e-91 337.0 188 86.2
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 1.6e-90 336.3 197 83.2
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 3.6e-90 335.1 188 85.6
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 2.0e-88 329.3 197 80.7
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 7.5e-88 327.4 197 80.7
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 6.2e-82 307.8 194 75.8
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.1e-81 307.0 195 75.9
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.8e-73 279.6 162 87.7
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.7e-68 263.1 194 61.3
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.6e-66 256.5 194 60.3
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 4.0e-65 251.9 194 59.8
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 5.3e-65 251.5 194 59.3
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.0e-65 250.8 194 58.8
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.2e-64 250.4 194 59.8
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.0e-64 249.6 194 60.3
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 5.8e-64 248.1 194 57.2
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.7e-63 246.5 194 57.7
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.8e-63 245.4 194 57.7
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 6.4e-63 244.6 196 56.1
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 6.4e-63 244.6 194 57.2
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 6.4e-63 244.6 188 59.6
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 8.4e-63 244.2 197 56.9
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 1.4e-62 243.4 192 58.9
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 2.4e-62 242.7 193 57.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 7.1e-62 241.1 194 57.2
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 9.3e-62 240.7 188 58.0
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-61 240.4 188 58.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.2e-61 240.4 188 58.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.2e-61 240.4 177 62.7
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.6e-61 240.0 188 58.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.6e-61 240.0 194 56.7
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 2.1e-61 239.6 194 57.7
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 2.1e-61 239.6 194 55.7
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-61 239.2 182 60.4
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 3.5e-61 238.8 194 56.7
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 3.5e-61 238.8 194 56.7
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 4.6e-61 238.4 182 58.8
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 6.0e-61 238.0 194 57.2
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.3e-60 236.9 197 60.4
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.7e-60 236.5 182 57.1
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.7e-60 236.5 190 60.5
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 3.0e-60 235.7 194 56.7
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.0e-60 235.7 194 56.2
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 6.6e-60 234.6 183 58.5
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 8.7e-60 234.2 196 58.7
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.1e-59 233.8 195 56.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.5e-59 233.4 182 56.6
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 1.9e-59 233.0 194 55.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 3.3e-59 232.3 194 55.2
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 3.3e-59 232.3 192 56.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.3e-59 231.9 195 56.9
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 4.3e-59 231.9 196 55.1
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 5.6e-59 231.5 194 54.6
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.3e-59 231.1 188 55.9
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 9.6e-59 230.7 190 56.8
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 9.6e-59 230.7 196 56.1
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-58 229.9 195 56.9
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 2.8e-58 229.2 183 58.5
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.8e-58 228.4 194 55.2
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 4.8e-58 228.4 195 54.9
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 6.2e-58 228.0 194 54.1
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.8e-57 226.5 195 54.9
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 3.1e-57 225.7 183 55.2
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 3.1e-57 225.7 195 53.3
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 3.1e-57 225.7 194 55.2
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 4.0e-57 225.3 193 56.0
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 4.0e-57 225.3 183 56.3
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 5.3e-57 224.9 195 54.4
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 5.3e-57 224.9 195 55.4
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.3e-57 224.9 195 54.4
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 5.3e-57 224.9 196 54.6
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 6.9e-57 224.6 193 54.4
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 6.9e-57 224.6 183 55.7
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.2e-56 223.8 194 54.6
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.2e-56 223.8 194 52.6
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.2e-56 223.8 194 53.6
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 4.5e-56 221.9 194 52.6
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 5.8e-56 221.5 183 55.7
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.7e-55 219.9 194 52.1
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 4.9e-55 218.4 194 53.6
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 8.4e-55 217.6 195 51.8
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.1e-54 217.2 194 51.0
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 1.4e-54 216.9 196 52.6
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 1.4e-54 216.9 188 53.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 2.4e-54 216.1 183 53.0
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 3.2e-54 215.7 194 52.6
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.2e-54 215.7 194 52.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 4.2e-54 215.3 194 53.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 9.3e-54 214.2 194 50.5
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.6e-53 213.4 194 53.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.6e-53 213.4 176 57.4
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.6e-53 213.4 194 52.1
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 2.7e-53 212.6 192 53.6
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 3.5e-53 212.2 205 49.3
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 1.0e-52 210.7 176 56.8
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 3.9e-52 208.8 189 52.9
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.7e-52 208.0 178 54.5
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.3e-51 205.3 183 53.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 5.6e-51 204.9 192 51.0
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.1e-50 203.0 183 51.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-50 202.6 212 47.6
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 4.8e-50 201.8 197 48.7
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 8.1e-50 201.1 212 46.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 1.1e-49 200.7 213 47.4
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 4.0e-49 198.7 163 54.0
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 5.3e-49 198.4 160 55.6
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.0e-48 196.4 212 47.2
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.1e-46 190.7 152 56.6
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.2e-46 188.7 157 54.8
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 5.5e-46 188.3 160 53.8
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 1.5e-43 180.3 194 46.4
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 7.4e-43 177.9 142 57.0
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 6.2e-42 174.9 131 61.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 1.1e-41 174.1 198 43.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.4e-41 173.7 184 47.3
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.5e-40 170.2 191 46.1
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 2.2e-39 166.4 172 51.7
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 1.2e-37 160.6 231 41.1
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 6.1e-37 158.3 155 50.3
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 1.9e-35 153.3 200 42.0
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 3.3e-35 152.5 196 40.8
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.3e-31 140.6 183 39.9
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 4.2e-30 135.6 128 50.0
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 5.5e-30 135.2 186 39.2
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 7.4e-27 124.8 75 84.0
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.4e-25 119.8 185 37.3
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 9.1e-25 117.9 188 35.1
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 9.1e-25 117.9 184 35.9
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 6.7e-20 101.7 116 44.0
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.7e-18 97.1 138 40.6
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 2.8e-18 96.3 76 59.2
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.4e-17 93.2 88 48.9
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.5e-15 85.1 99 41.4


User provided reference genes

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