Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 1.0e-201 707.2 576 100.0
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 9.8e-104 381.7 283 73.1
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 1.2e-101 374.8 601 63.7
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 2.0e-96 357.5 274 71.2
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 5.8e-96 355.9 632 67.7
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 9.9e-96 355.1 632 67.7
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.7e-95 354.4 284 69.4
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 2.2e-95 354.0 597 57.5
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 2.7e-93 347.1 284 69.7
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 5.1e-92 342.8 581 49.2
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 6.6e-92 342.4 605 60.5
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.6e-90 337.8 605 62.5
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 9.0e-73 278.9 587 44.1
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 4.3e-51 206.8 271 50.9
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 4.2e-46 190.3 208 52.4
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 3.0e-44 184.1 208 50.0
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 1.3e-42 178.7 277 43.7
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 2.9e-39 167.5 285 39.3
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 5.0e-39 166.8 276 40.9
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 2.5e-38 164.5 262 42.4
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 7.2e-38 162.9 273 41.0
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 1.2e-37 162.2 279 41.2
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 1.2e-37 162.2 289 39.4
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 1.2e-37 162.2 289 39.4
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.0e-36 159.1 284 38.4
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 3.9e-36 157.1 203 42.4
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 8.8e-36 156.0 279 40.5
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 8.8e-36 156.0 209 44.0
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 8.8e-36 156.0 284 40.1
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.1e-35 155.6 180 45.6
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 1.1e-35 155.6 249 37.3
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 3.3e-35 154.1 286 38.8
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 1.3e-34 152.1 219 45.2
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 3.7e-34 150.6 254 40.6
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 8.2e-34 149.4 288 37.8
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 8.2e-34 149.4 208 43.8
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.8e-33 148.3 279 38.0
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 2.4e-33 147.9 271 40.2
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 3.1e-33 147.5 270 37.8
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 1.6e-32 145.2 213 45.1
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.0e-32 144.8 271 35.1
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 1.7e-31 141.7 211 43.1
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 2.9e-31 141.0 268 36.2
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 3.8e-31 140.6 212 41.0
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 3.8e-31 140.6 261 38.3
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 5.0e-31 140.2 260 38.5
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.5e-30 138.7 270 37.8
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 7.2e-30 136.3 261 38.3
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 1.6e-29 135.2 266 36.8
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.6e-29 135.2 244 37.7
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 2.7e-29 134.4 277 37.2
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 2.7e-29 134.4 203 41.4
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 4.7e-29 133.7 228 41.2
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 8.0e-29 132.9 205 41.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 8.0e-29 132.9 258 35.7
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 3.0e-28 131.0 218 38.5
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 3.0e-28 131.0 190 41.1
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.0e-28 130.6 261 33.0
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 5.2e-28 130.2 261 36.4
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 1.5e-27 128.6 280 33.9
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 1.5e-27 128.6 258 34.9
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 2.0e-27 128.3 291 35.7
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.6e-27 127.9 278 34.2
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.7e-27 126.7 270 34.1
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 7.5e-27 126.3 239 37.2
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.8e-26 124.4 231 37.7
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.8e-26 124.4 180 40.0
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 4.1e-25 120.6 264 33.7
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 1.2e-24 119.0 209 37.8
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 2.7e-24 117.9 203 38.4
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 4.5e-24 117.1 215 39.1
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 4.5e-24 117.1 237 34.2
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 5.9e-24 116.7 292 33.2
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.3e-23 115.5 267 34.5
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 3.8e-23 114.0 209 35.4
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 5.0e-23 113.6 259 34.0
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 6.5e-23 113.2 219 35.6
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 1.1e-22 112.5 273 30.4
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 2.5e-22 111.3 186 36.6
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 9.4e-22 109.4 290 32.1
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 1.6e-21 108.6 253 32.4
arahy.Tifrunner.gnm1.ann1.7TI70S Arachis hypogaea HOM05D006278 ORTHO05D007526 2.7e-21 107.8 220 35.0
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 4.7e-21 107.1 227 37.4
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 6.1e-21 106.7 215 37.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.4e-20 105.5 177 36.2
arahy.Tifrunner.gnm1.ann1.K7D9EI Arachis hypogaea HOM05D006278 ORTHO05D007526 1.8e-20 105.1 220 35.0
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.8e-20 105.1 262 34.0
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 2.3e-20 104.8 218 35.8
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 4.0e-20 104.0 232 34.9
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 4.0e-20 104.0 176 39.8
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 4.0e-20 104.0 200 38.5
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 8.8e-20 102.8 201 34.8
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.0e-19 101.7 186 38.7
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 2.0e-19 101.7 209 34.4
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 3.4e-19 100.9 243 32.5
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 7.5e-19 99.8 218 36.2
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 1.3e-18 99.0 195 34.4
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 2.8e-18 97.8 242 30.6
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.4e-17 95.5 246 35.0
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 1.4e-17 95.5 218 33.5
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 5.4e-17 93.6 291 30.2
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 7.0e-17 93.2 252 31.0
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.2e-16 92.4 252 31.0
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 1.6e-16 92.0 197 38.6
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 2.7e-16 91.3 273 29.7
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 1.7e-15 88.6 146 41.8
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.9e-15 87.8 255 33.7
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 8.5e-15 86.3 258 29.1
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-14 85.9 181 36.5
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.2e-14 84.0 273 27.8
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 5.5e-14 83.6 207 32.9
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 1.6e-13 82.0 262 30.5
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.6e-13 80.9 255 32.5
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 5.2e-12 77.0 198 33.3
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 9.8e-11 72.8 182 35.7
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 2.8e-10 71.2 154 35.1
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 1.4e-09 68.9 112 39.3
Nitab4.5_0003711g0040 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.4e-09 67.0 129 38.0
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 7.0e-09 66.6 149 32.2
Hma1.2p1_0180F.1_g079790 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 2.9e-07 61.2 128 33.6
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 5.0e-07 60.5 222 27.9
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 6.6e-07 60.1 106 34.9
PGR031G2923 Punica granatum HOM05D004242 ORTHO05D004349 6.6e-07 60.1 114 38.6
Sabra14G0075500 Salix brachista HOM05D004242 ORTHO05D004349 8.6e-07 59.7 146 32.9
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.1e-06 59.3 120 35.0
Duzib138G0794 Durio zibethinus HOM05D004242 ORTHO05D004349 1.5e-06 58.9 136 34.6
Nitab4.5_0002527g0010 Nicotiana tabacum HOM05D019980 ORTHO05D022204 1.5e-06 58.9 131 32.8
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.3e-06 57.8 221 27.6
Nitab4.5_0000508g0190 Nicotiana tabacum HOM05D004242 ORTHO05D004349 3.3e-06 57.8 105 35.2
QL08p046281 Quercus lobata HOM05D004242 ORTHO05D004349 3.3e-06 57.8 122 32.0
Gohir.A11G099300 Gossypium hirsutum HOM05D004242 ORTHO05D004349 5.6e-06 57.0 111 36.0
Hma1.2p1_0309F.1_g120440 Hydrangea macrophylla HOM05D004242 ORTHO05D004349 5.6e-06 57.0 153 31.4
Oeu042952.1 Olea europaea HOM05D004242 ORTHO05D004349 5.6e-06 57.0 110 31.8
Carub.0005s2862 Capsella rubella HOM05D004242 ORTHO05D004349 7.3e-06 56.6 117 38.5
AUR62004535 Chenopodium quinoa HOM05D004242 ORTHO05D004349 7.3e-06 56.6 172 27.3
Duzib133G0806 Durio zibethinus HOM05D004242 ORTHO05D004349 7.3e-06 56.6 134 33.6
GSVIVG01027399001 Vitis vinifera HOM05D004242 ORTHO05D004349 7.3e-06 56.6 121 28.9


User provided reference genes

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