Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 0.0e+00 1227.2 625 100.0
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 0.0e+00 1082.8 637 89.5
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.2e-293 1012.7 635 84.4
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 4.0e-292 1007.7 627 85.2
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.1e-289 999.6 627 84.8
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 7.8e-288 993.4 631 83.0
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 3.2e-273 944.9 631 78.9
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 4.1e-273 944.5 631 78.9
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 1.7e-271 939.1 628 78.5
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 2.8e-269 931.8 627 78.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 1.1e-268 929.9 627 77.8
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 5.6e-262 907.5 636 76.7
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 7.8e-248 860.5 670 70.7
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.5e-246 856.3 641 72.5
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 1.6e-245 852.8 638 72.6
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.5e-243 846.3 637 71.9
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.8e-242 841.6 637 71.9
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 6.4e-242 840.9 640 71.4
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 2.0e-235 819.3 632 69.6
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 9.9e-235 817.0 632 69.3
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-230 802.4 633 69.5
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 9.6e-230 800.4 640 69.4
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 3.7e-229 798.5 631 67.8
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.4e-227 792.0 556 75.4
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 7.6e-227 790.8 609 70.9
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.3e-221 773.5 672 63.5
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 6.3e-205 718.0 608 62.7
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 4.5e-203 711.8 653 58.5
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 6.5e-202 708.0 653 58.2
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.2e-201 705.7 664 58.1
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 8.8e-199 697.6 648 58.8
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 5.7e-198 694.9 637 59.8
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 7.4e-198 694.5 681 58.0
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.8e-197 692.6 681 56.5
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 8.2e-197 691.0 590 62.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 1.8e-196 689.9 590 63.1
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 3.1e-196 689.1 591 62.8
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 7.0e-196 688.0 661 58.1
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 1.6e-195 686.8 622 58.7
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.2e-194 682.9 681 55.9
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 6.5e-194 681.4 637 59.0
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.1e-193 680.6 579 63.2
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.5e-193 680.2 637 58.9
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 2.5e-193 679.5 637 58.9
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 3.2e-193 679.1 662 57.9
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 4.2e-193 678.7 659 57.7
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 7.2e-193 677.9 606 59.4
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.6e-192 676.8 665 56.7
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 3.6e-192 675.6 604 59.6
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 4.7e-192 675.2 596 62.1
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 3.0e-191 672.5 670 55.4
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 8.8e-191 671.0 594 59.9
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.5e-190 670.2 662 56.0
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 4.4e-190 668.7 668 56.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 7.5e-190 667.9 675 55.3
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 2.8e-189 666.0 662 55.0
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 6.3e-189 664.8 662 55.3
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 8.2e-189 664.5 549 63.6
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 1.1e-188 664.1 611 57.9
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.1e-188 664.1 660 55.6
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 4.1e-188 662.1 656 56.9
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 4.1e-188 662.1 605 59.3
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 5.3e-188 661.8 660 57.0
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 9.1e-188 661.0 665 56.5
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 1.6e-187 660.2 600 58.5
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 3.8e-186 655.6 611 57.4
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 3.8e-186 655.6 667 54.9
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 1.9e-185 653.3 549 63.4
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 2.5e-185 652.9 655 56.5
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.1e-184 649.8 673 55.0
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 8.0e-184 647.9 606 58.4
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.5e-182 643.7 612 57.5
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.5e-182 643.7 612 57.5
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 9.8e-182 641.0 616 58.8
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.3e-181 640.6 654 54.6
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.3e-181 640.6 666 55.1
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 8.3e-181 637.9 644 54.3
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 7.7e-179 631.3 568 58.3
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.5e-177 626.3 643 54.4
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 4.7e-176 622.1 652 53.8
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 6.1e-176 621.7 600 55.5
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 8.0e-176 621.3 587 56.2
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.4e-175 620.5 648 53.7
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 2.3e-175 619.8 600 56.0
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 6.8e-175 618.2 582 57.0
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 7.5e-174 614.8 644 52.6
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.5e-171 605.9 606 56.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 5.9e-171 605.1 606 56.3
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 5.9e-171 605.1 589 57.7
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 1.7e-170 603.6 648 53.9
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 2.5e-169 599.7 674 51.3
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 3.3e-169 599.4 648 53.7
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 3.0e-167 592.8 592 53.5
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.4e-166 589.3 634 54.3
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 3.7e-165 585.9 588 54.4
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 8.3e-165 584.7 592 53.0
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 2.7e-163 579.7 619 54.3
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.3e-162 576.6 544 55.7
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.5e-161 573.2 497 60.8
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 3.4e-158 562.8 665 49.2
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 7.5e-158 561.6 553 54.8
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 9.8e-158 561.2 664 49.7
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 2.9e-157 559.7 606 51.3
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 1.1e-156 557.8 597 52.4
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 1.1e-156 557.8 530 55.1
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.3e-154 550.8 621 51.9
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 2.8e-152 543.1 595 51.1
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 1.1e-151 541.2 665 46.3
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 1.5e-150 537.3 512 54.3
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 2.9e-149 533.1 670 47.3
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.6e-147 525.8 637 47.6
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 8.6e-146 521.5 597 48.7
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 4.4e-142 509.2 568 49.6
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 3.2e-140 503.1 693 42.7
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.9e-137 493.8 450 59.8
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 2.5e-137 493.4 612 47.7
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 1.1e-135 488.0 537 51.0
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 9.0e-135 485.0 629 46.4
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.0e-127 459.5 620 46.1
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 4.2e-124 449.5 317 74.4
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 3.5e-123 446.4 365 65.5
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 6.9e-119 432.2 614 41.2
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 4.8e-112 409.5 217 92.2
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 6.2e-112 409.1 641 39.0
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 5.1e-106 389.4 242 81.4
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 8.5e-101 372.1 643 41.2
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 7.9e-91 339.0 538 39.4
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 1.1e-87 328.6 562 36.3
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.2e-85 320.9 577 36.6
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.1e-83 314.3 594 34.7
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 1.8e-82 311.2 420 41.2
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 2.5e-76 290.8 301 52.5
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.5e-60 238.4 130 91.5
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 1.5e-41 175.3 252 44.0
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 6.6e-21 106.7 628 22.3
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 3.9e-13 80.9 66 65.2
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 4.9e-08 63.9 217 29.0
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 5.4e-07 60.5 51 60.8
A07p40740 Brassica napus HOM05D005308 ORTHO05D006494 7.1e-07 60.1 41 80.5


User provided reference genes

Program Settings