Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g30140 Schrenkiella parvula HOM05D006757 ORTHO05D004651 0.0e+00 1297.0 748 100.0
AT1G75010 Arabidopsis thaliana HOM05D006757 ORTHO05D004651 0.0e+00 1090.9 749 86.2
AL2G34890 Arabidopsis lyrata HOM05D006757 ORTHO05D004651 0.0e+00 1086.2 748 85.8
Thhalv10018185m.g Eutrema salsugineum HOM05D006757 ORTHO05D004651 0.0e+00 1079.7 745 86.8
BcaC08g46956 Brassica carinata HOM05D006757 ORTHO05D004651 2.6e-306 1055.0 752 85.0
Carub.0002s2179 Capsella rubella HOM05D006757 ORTHO05D004651 2.9e-305 1051.6 748 84.6
BraA07t31608Z Brassica rapa HOM05D006757 ORTHO05D004651 2.1e-292 1008.8 758 81.9
A07p40640 Brassica napus HOM05D006757 ORTHO05D004651 4.0e-291 1004.6 753 82.1
BolC6t39938H Brassica oleracea HOM05D006757 ORTHO05D004651 2.4e-288 995.3 755 82.4
C06p49010 Brassica napus HOM05D006757 ORTHO05D004651 1.1e-285 986.5 780 80.0
BcaC08g46933 Brassica carinata HOM05D006757 ORTHO05D004651 2.5e-277 958.7 694 84.6
Aa31LG4G5230 Aethionema arabicum HOM05D006757 ORTHO05D004651 6.5e-273 944.1 771 76.8
CARHR068320 Cardamine hirsuta HOM05D006757 ORTHO05D004651 1.2e-242 843.6 604 86.8
BcaNung05827 Brassica carinata HOM05D006757 ORTHO05D004651 6.8e-214 748.0 764 63.2
THA.LOC104809054 Tarenaya hassleriana HOM05D006757 ORTHO05D004651 2.8e-207 726.1 771 65.4
MD16G1009700 Malus domestica HOM05D006757 ORTHO05D004651 4.6e-138 496.1 759 50.5
Prupe.1G340900 Prunus persica HOM05D006757 ORTHO05D004651 8.2e-135 485.3 781 49.0
PGR142G0977 Punica granatum HOM05D006757 ORTHO05D004651 2.4e-134 483.8 728 49.5
Gohir.A01G144000 Gossypium hirsutum HOM05D006757 ORTHO05D004651 9.1e-134 481.9 788 48.4
Duzib248G0842 Durio zibethinus HOM05D006757 ORTHO05D004651 4.5e-133 479.6 787 48.8
Thecc.02G299300 Theobroma cacao HOM05D006757 ORTHO05D004651 2.5e-131 473.8 780 47.4
RcHm_v2.0_Chr4g0445651 Rosa chinensis HOM05D006757 ORTHO05D004651 3.2e-131 473.4 781 48.5
FAN17G2536 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.2e-130 471.5 708 51.3
Nn4g24781 Nelumbo nucifera HOM05D006757 ORTHO05D004651 1.4e-129 468.0 710 50.7
FAN12G3615 Fragaria x ananassa HOM05D006757 ORTHO05D004651 1.8e-129 467.6 689 51.8
Actinidia12418 Actinidia chinensis HOM05D006757 ORTHO05D004651 3.9e-129 466.5 726 49.7
CSS0018736 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.9e-129 466.5 702 52.1
CiPaw.05G164400 Carya illinoinensis HOM05D006757 ORTHO05D004651 1.1e-128 464.9 738 49.2
Gohir.D01G136700 Gossypium hirsutum HOM05D006757 ORTHO05D004651 9.7e-128 461.8 791 47.8
COL.COLO4_27539 Corchorus olitorius HOM05D006757 ORTHO05D004651 1.7e-127 461.1 699 50.8
Gorai.002G169200 Gossypium raimondii HOM05D006757 ORTHO05D004651 1.7e-127 461.1 791 47.5
BcaC03g15537 Brassica carinata HOM05D006757 ORTHO05D004651 1.1e-126 458.4 437 62.9
Sabra10G0071900 Salix brachista HOM05D006757 ORTHO05D004651 1.4e-126 458.0 813 37.8
TWI53G1444 Tripterygium wilfordii HOM05D006757 ORTHO05D004651 3.1e-126 456.8 793 47.4
BolC2t09256H Brassica oleracea HOM05D006757 ORTHO05D004651 1.6e-125 454.5 471 57.7
Dinv02708 Davidia involucrata HOM05D006757 ORTHO05D004651 1.7e-124 451.1 773 47.9
FvH4_4g36030 Fragaria vesca HOM05D006757 ORTHO05D004651 6.1e-122 442.6 630 53.5
QL03p041041 Quercus lobata HOM05D006757 ORTHO05D004651 5.2e-121 439.5 890 42.6
Lj6C727G2 Lonicera japonica HOM05D006757 ORTHO05D004651 1.2e-120 438.3 770 46.1
TAR622G0072 Trochodendron aralioides HOM05D006757 ORTHO05D004651 6.3e-119 432.6 780 47.1
Ca_11197_v3 Cicer arietinum L. HOM05D006757 ORTHO05D004651 3.8e-116 423.3 755 46.4
GSVIVG01010290001 Vitis vinifera HOM05D006757 ORTHO05D004651 3.8e-116 423.3 674 50.7
Psat6g231440 Pisum sativum HOM05D006757 ORTHO05D004651 3.2e-115 420.2 687 47.6
FAN07G0462 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-115 419.9 776 43.6
FAN22G1875 Fragaria x ananassa HOM05D006757 ORTHO05D004651 4.2e-115 419.9 757 46.6
CsaV3_5G017370 Cucumis sativus L. HOM05D006757 ORTHO05D004651 2.7e-114 417.2 718 46.2
TPR.G2437 Trifolium pratense HOM05D006757 ORTHO05D004651 2.7e-114 417.2 691 44.6
Medtr1g112280 Medicago truncatula HOM05D006757 ORTHO05D004651 4.7e-114 416.4 702 46.9
MELO3C005216.2 Cucumis melo HOM05D006757 ORTHO05D004651 1.8e-113 414.5 784 44.6
Lj5g0011768 Lotus japonicus HOM05D006757 ORTHO05D004651 2.3e-113 414.1 702 46.9
CANSAT78G0289 Cannabis sativa HOM05D006757 ORTHO05D004651 2.6e-112 410.6 690 48.0
Ciclev10006553m.g Citrus clementina HOM05D006757 ORTHO05D004651 1.7e-111 407.9 615 53.3
ClCG01G006950 Citrullus lanatus HOM05D006757 ORTHO05D004651 2.8e-111 407.1 714 47.6
VMungo0720G1053 Vigna mungo HOM05D006757 ORTHO05D004651 4.8e-111 406.4 725 46.5
Lalb_Chr21g0306871 Lupinus albus HOM05D006757 ORTHO05D004651 4.1e-110 403.3 699 46.8
Aqoxy3G04184 Aquilegia oxysepala HOM05D006757 ORTHO05D004651 5.4e-110 402.9 730 46.3
Glyma.10G280500 Glycine max HOM05D006757 ORTHO05D004651 2.0e-109 401.0 790 43.5
arahy.Tifrunner.gnm1.ann1.18R96V Arachis hypogaea HOM05D006757 ORTHO05D004651 1.7e-108 397.9 714 46.5
arahy.Tifrunner.gnm1.ann1.CLVE3A Arachis hypogaea HOM05D006757 ORTHO05D004651 5.0e-108 396.4 714 46.4
Solyc01g007880.4 Solanum lycopersicum HOM05D006757 ORTHO05D004651 6.5e-108 396.0 791 43.7
Rhsim09G0078600 Rhododendron simsii HOM05D006757 ORTHO05D004651 9.5e-107 392.1 831 41.8
Manes.17G092000 Manihot esculenta HOM05D006757 ORTHO05D004651 1.2e-106 391.7 634 51.9
Sopen01g003410 Solanum pennellii HOM05D006757 ORTHO05D004651 1.4e-105 388.3 721 44.9
ECA233G5323 Erigeron canadensis HOM05D006757 ORTHO05D004651 3.0e-105 387.1 717 46.2
Phvul.007G020500 Phaseolus vulgaris HOM05D006757 ORTHO05D004651 2.0e-104 384.4 715 45.6
PSO063G3495 Papaver somniferum HOM05D006757 ORTHO05D004651 2.8e-103 380.6 718 45.4
HanXRQChr12g0365871 Helianthus annuus HOM05D006757 ORTHO05D004651 4.9e-103 379.8 685 46.3
EL10Ac6g15397 Beta vulgaris HOM05D006757 ORTHO05D004651 1.2e-101 375.2 768 42.6
Nitab4.5_0004543g0020 Nicotiana tabacum HOM05D006757 ORTHO05D004651 2.5e-99 367.5 655 45.8
Eucgr.G02041 Eucalyptus grandis HOM05D006757 ORTHO05D004651 4.3e-99 366.7 652 49.7
MSTRG.2098 Avicennia marina HOM05D006757 ORTHO05D004651 1.2e-98 365.2 694 44.8
Migut.E00572 Erythranthe guttata HOM05D006757 ORTHO05D004651 1.2e-96 358.6 695 44.0
DCAR_030323 Daucus carota HOM05D006757 ORTHO05D004651 4.9e-95 353.2 640 40.0
AUR62017786 Chenopodium quinoa HOM05D006757 ORTHO05D004651 1.2e-93 348.6 812 39.3
Lsat_1_v5_gn_8_33901 Lactuca sativa HOM05D006757 ORTHO05D004651 1.1e-91 342.0 715 41.7
ATR0807G004 Amborella trichopoda HOM05D006757 ORTHO05D004651 7.3e-91 339.3 624 37.0
AUR62003477 Chenopodium quinoa HOM05D006757 ORTHO05D004651 7.5e-88 329.3 618 46.1
Cpa.g.sc2.85 Carica papaya HOM05D006757 ORTHO05D004651 7.0e-86 322.8 458 46.7
SGA_v2.0_scaffold470G52072 Striga asiatica HOM05D006757 ORTHO05D004651 9.2e-86 322.4 733 40.8
Potri.010G099300 Populus trichocarpa HOM05D006757 ORTHO05D004651 4.6e-85 320.1 540 50.9
Cc11_g03340 Coffea canephora HOM05D006757 ORTHO05D004651 1.0e-84 318.9 663 44.6
vmacro10765 Vaccinium macrocarpon HOM05D006757 ORTHO05D004651 1.7e-84 318.2 689 43.7
Atru.chr11.1028 Acer truncatum HOM05D006757 ORTHO05D004651 3.9e-84 317.0 480 41.5
Sed0027541 Sechium edule HOM05D006757 ORTHO05D004651 1.0e-76 292.4 564 48.0
Peaxi162Scf00097g00232 Petunia axillaris HOM05D006757 ORTHO05D004651 3.3e-75 287.3 627 42.6
unitig_699.g19471 Utricularia gibba HOM05D006757 ORTHO05D004651 6.8e-73 279.6 674 40.8
Os09g0555600 Oryza sativa ssp. japonica HOM05D006757 ORTHO05D004651 1.5e-72 278.5 602 34.1
SalBow2G2705 Salvia bowleyana HOM05D006757 ORTHO05D004651 1.1e-70 272.3 568 47.0
Sc17g0005480 Simmondsia chinensis HOM05D006757 ORTHO05D004651 1.1e-67 262.3 571 46.2
HPP92_025367 Vanilla planifolia HOM05D006757 ORTHO05D004651 1.2e-66 258.8 673 38.8
CAN.G282.84 Capsicum annuum HOM05D006757 ORTHO05D004651 1.2e-61 242.3 532 43.6
Nitab4.5_0000944g0040 Nicotiana tabacum HOM05D006757 ORTHO05D004651 1.4e-57 228.8 289 45.0
Aa31LG4G5420 Aethionema arabicum HOM05D000736 ORTHO05D002593 2.6e-40 171.4 145 62.1
Oeu001141.1 Olea europaea HOM05D006757 ORTHO05D004651 2.5e-38 164.9 191 47.1
Hma1.2p1_0933F.1_g238410 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 7.1e-38 163.3 438 46.3
CSS0036943 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.5e-37 161.0 170 51.2
Haze_10724 Corylus avellana HOM05D006757 ORTHO05D004651 1.6e-34 152.1 439 42.6
Hma1.2p1_0933F.1_g238400 Hydrangea macrophylla HOM05D006757 ORTHO05D004651 1.8e-33 148.7 327 36.1
Mapoly0058s0047 Marchantia polymorpha HOM05D006757 ORTHO05D004651 1.3e-31 142.5 660 25.9
Hund12802 Selenicereus undatus HOM05D006757 ORTHO05D004651 1.3e-23 115.9 415 44.1
SalBow2G2121 Salvia bowleyana HOM05D006757 ORTHO05D004651 2.7e-21 108.2 216 33.3
SEGI_38740 Sequoiadendron giganteum HOM05D006757 ORTHO05D004651 5.0e-15 87.4 74 58.1
CSS0046499 Camellia sinensis var. sinensis HOM05D006757 ORTHO05D004651 3.2e-14 84.7 47 78.7
CDE04G1248 Ceratophyllum demersum HOM05D006757 ORTHO05D004651 7.2e-14 83.6 75 58.7
COL.COLO4_13886 Corchorus olitorius HOM05D003428 ORTHO05D004131 1.6e-13 82.4 274 32.1
Zm00001eb320640 Zea mays HOM05D006757 ORTHO05D004651 1.6e-13 82.4 256 32.0
Glyma.20G109150 Glycine max HOM05D006757 ORTHO05D004651 1.8e-12 79.0 81 48.1
C02p32190 Brassica napus HOM05D006757 ORTHO05D004651 1.1e-09 69.7 34 82.4
Ciclev10006110m.g Citrus clementina HOM05D006757 ORTHO05D004651 3.5e-08 64.7 164 29.3
SGA_v2.0_scaffold184G39960 Striga asiatica HOM05D001616 ORTHO05D003701 3.8e-07 61.2 349 22.3
A02p19650 Brassica napus HOM05D006757 ORTHO05D004651 5.0e-07 60.8 32 90.6
Peaxi162Scf00097g02317 Petunia axillaris HOM05D006757 ORTHO05D004651 8.5e-07 60.1 77 42.9
Cc11_g03350 Coffea canephora HOM05D006757 ORTHO05D004651 1.9e-06 58.9 76 39.5
HanXRQChr08g0229921 Helianthus annuus HOM05D001616 ORTHO05D003701 5.5e-06 57.4 344 21.5
ECA247G0512 Erigeron canadensis HOM05D001616 ORTHO05D003701 7.2e-06 57.0 338 21.0
Migut.J01043 Erythranthe guttata HOM05D001616 ORTHO05D003701 7.2e-06 57.0 370 21.6
MCO07G335 Micromonas commoda HOM05D001616 ORTHO05D004707 9.4e-06 56.6 319 22.3


User provided reference genes

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