Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 1.9e-72 275.8 141 100.0
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 7.1e-56 220.7 145 79.3
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 2.1e-55 219.2 145 78.6
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 6.0e-55 217.6 139 80.6
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 1.8e-54 216.1 146 78.1
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 1.8e-54 216.1 146 78.1
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 8.7e-54 213.8 146 77.4
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 7.4e-53 210.7 146 76.7
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 7.4e-53 210.7 146 76.7
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 9.6e-53 210.3 146 76.7
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 8.1e-52 207.2 146 76.0
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 1.1e-51 206.8 143 76.2
BraA07t30596Z Brassica rapa HOM05D007960 ORTHO05D010026 4.5e-42 174.9 139 69.8
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 3.5e-39 165.2 141 63.8
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 4.8e-28 128.3 136 61.8
BcaC08g45611 Brassica carinata HOM05D007960 ORTHO05D010026 1.3e-20 103.6 67 76.1
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 4.8e-20 101.7 129 45.0
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 4.5e-18 95.1 141 41.8
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 7.2e-16 87.8 85 51.8
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 1.2e-15 87.0 140 41.4
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 1.2e-15 87.0 140 41.4
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 1.6e-15 86.7 142 43.7
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 2.7e-15 85.9 117 43.6
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 3.6e-15 85.5 93 50.5
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 7.9e-15 84.3 104 45.2
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 1.4e-14 83.6 125 41.6
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 2.3e-14 82.8 131 45.8
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 2.3e-14 82.8 120 40.8
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 5.2e-14 81.6 106 45.3
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 5.2e-14 81.6 119 46.2
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 5.2e-14 81.6 138 41.3
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 1.1e-13 80.5 115 43.5
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 5.7e-13 78.2 119 42.0
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 1.3e-12 77.0 135 41.5
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 4.8e-12 75.1 135 37.8
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.4e-11 73.6 69 52.2
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.4e-11 73.6 69 52.2
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 1.4e-11 73.6 100 44.0
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 5.3e-11 71.6 117 39.3
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 7.0e-11 71.2 130 41.5
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 7.0e-11 71.2 88 45.5
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 1.6e-10 70.1 82 45.1
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 2.6e-10 69.3 85 45.9
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 2.6e-10 69.3 84 51.2
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 4.5e-10 68.6 134 37.3
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 4.5e-10 68.6 108 40.7
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 5.9e-10 68.2 88 50.0
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 1.3e-09 67.0 130 40.0
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.7e-09 66.6 89 53.9
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 2.9e-09 65.9 123 37.4
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 2.9e-09 65.9 131 43.5
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 8.5e-09 64.3 144 41.0
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 8.5e-09 64.3 131 38.2
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 1.1e-08 63.9 139 38.1
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.5e-08 63.5 131 42.0
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.5e-08 62.8 128 36.7
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 2.5e-08 62.8 134 38.8
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 2.5e-08 62.8 103 41.7
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 3.2e-08 62.4 121 38.0
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 3.2e-08 62.4 124 45.2
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 4.2e-08 62.0 145 33.1
Duzib205G0322 Durio zibethinus HOM05D007960 ORTHO05D010026 5.5e-08 61.6 64 50.0
Sed0018526 Sechium edule HOM05D007960 ORTHO05D010026 1.2e-07 60.5 94 43.6
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 2.1e-07 59.7 75 46.7
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 3.6e-07 58.9 102 46.1
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 4.7e-07 58.5 116 40.5
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 6.1e-07 58.2 97 41.2
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 1.0e-06 57.4 112 34.8
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 1.4e-06 57.0 69 46.4
ClCG04G011400 Citrullus lanatus HOM05D007960 ORTHO05D010026 1.4e-06 57.0 74 41.9
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.4e-06 57.0 129 38.8
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 1.8e-06 56.6 132 35.6
Sed0009378 Sechium edule HOM05D007558 ORTHO05D009245 1.8e-06 56.6 115 37.4
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 4.0e-06 55.5 128 39.1
MSTRG.7902 Avicennia marina HOM05D007558 ORTHO05D009245 6.7e-06 54.7 91 37.4


User provided reference genes

Program Settings