Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 1.6e-52 209.1 104 100.0
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.5e-34 148.7 108 69.4
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.8e-33 144.4 108 73.1
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.4e-32 142.9 108 66.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.8e-32 142.5 108 67.6
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 3.1e-32 141.7 106 71.7
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 3.1e-32 141.7 106 71.7
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 9.0e-32 140.2 105 70.5
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 2.2e-30 135.6 105 68.6
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 4.9e-30 134.4 109 64.2
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.6e-28 127.9 105 66.7
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 8.7e-19 97.1 83 57.8
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 1.3e-14 83.2 100 49.0
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.4e-13 79.7 114 40.4
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 2.5e-13 79.0 122 41.8
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.2e-13 77.4 113 44.2
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 2.1e-12 75.9 111 42.3
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 6.1e-12 74.3 100 42.0
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.0e-11 73.6 100 40.0
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 1.0e-11 73.6 105 44.8
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 1.8e-11 72.8 115 41.7
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 1.8e-11 72.8 114 38.6
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 1.8e-11 72.8 110 35.5
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 3.0e-11 72.0 117 40.2
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 3.9e-11 71.6 100 40.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.9e-11 71.6 67 56.7
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 3.9e-11 71.6 105 40.0
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 5.1e-11 71.2 116 40.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 5.1e-11 71.2 101 43.6
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 6.7e-11 70.9 126 37.3
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 6.7e-11 70.9 115 40.0
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.8e-11 70.5 114 43.0
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 8.8e-11 70.5 114 43.0
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.1e-10 70.1 108 40.7
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.1e-10 70.1 114 40.4
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.1e-10 70.1 109 36.7
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-10 70.1 114 42.1
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.1e-10 70.1 117 40.2
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-10 69.7 104 42.3
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 1.5e-10 69.7 112 42.0
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 1.5e-10 69.7 111 41.4
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.0e-10 69.3 114 37.7
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 2.5e-10 68.9 122 37.7
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.3e-10 68.6 110 39.1
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 3.3e-10 68.6 114 42.1
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 3.3e-10 68.6 114 42.1
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 3.3e-10 68.6 112 39.3
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 3.3e-10 68.6 108 34.3
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 4.3e-10 68.2 116 38.8
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 4.3e-10 68.2 105 41.9
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 4.3e-10 68.2 55 60.0
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.7e-10 67.8 106 41.5
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.7e-10 67.8 106 41.5
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 7.4e-10 67.4 112 34.8
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 7.4e-10 67.4 88 44.3
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 7.4e-10 67.4 116 37.9
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 1.3e-09 66.6 112 38.4
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 1.3e-09 66.6 105 41.0
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.7e-09 66.2 104 40.4
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 1.7e-09 66.2 107 37.4
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.2e-09 65.9 105 41.0
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 2.2e-09 65.9 113 36.3
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 2.2e-09 65.9 108 35.2
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.2e-09 65.9 102 36.3
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.8e-09 65.5 107 38.3
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 2.8e-09 65.5 77 45.5
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 2.8e-09 65.5 109 38.5
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 3.7e-09 65.1 61 55.7
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 3.7e-09 65.1 92 42.4
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 3.7e-09 65.1 114 38.6
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 4.8e-09 64.7 112 37.5
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 4.8e-09 64.7 112 35.7
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.8e-09 64.7 109 41.3
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 4.8e-09 64.7 101 40.6
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.3e-09 64.3 106 35.8
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 6.3e-09 64.3 115 40.0
Lj4g0025770 Lotus japonicus HOM05D005816 ORTHO05D006915 8.2e-09 63.9 107 35.5
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.2e-09 63.9 120 39.2
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 8.2e-09 63.9 104 37.5
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.1e-08 63.5 54 53.7
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 1.1e-08 63.5 106 36.8
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.4e-08 63.2 95 43.2
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.4e-08 63.2 109 39.4
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.4e-08 63.2 114 40.4
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.4e-08 63.2 116 40.5
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 1.4e-08 63.2 60 50.0
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 1.4e-08 63.2 61 54.1
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.4e-08 63.2 100 42.0
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 2.4e-08 62.4 104 40.4
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 3.1e-08 62.0 113 37.2
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.1e-08 62.0 113 36.3
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.1e-08 62.0 113 37.2
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 3.1e-08 62.0 110 39.1
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.1e-08 61.6 108 38.0
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 4.1e-08 61.6 119 37.8
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 5.3e-08 61.2 111 35.1
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 5.3e-08 61.2 66 45.5
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 6.9e-08 60.8 59 52.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 6.9e-08 60.8 107 36.4
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 6.9e-08 60.8 98 41.8
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 6.9e-08 60.8 67 46.3
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 9.1e-08 60.5 107 37.4
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.5e-07 59.7 72 45.8
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 2.0e-07 59.3 62 50.0
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 2.0e-07 59.3 111 36.0
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 2.6e-07 58.9 115 33.9
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 3.4e-07 58.5 113 37.2
TPR.G24449 Trifolium pratense HOM05D007541 ORTHO05D009404 3.4e-07 58.5 78 42.3
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 4.5e-07 58.2 112 36.6
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 4.5e-07 58.2 117 37.6
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 1.0e-06 57.0 56 53.6
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-06 57.0 117 37.6
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.0e-06 57.0 117 37.6
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 1.0e-06 57.0 108 36.1
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.0e-06 57.0 116 33.6
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.7e-06 56.2 94 39.4
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 2.2e-06 55.8 48 54.2
Medtr5g043830 Medicago truncatula HOM05D007541 ORTHO05D009404 2.9e-06 55.5 41 58.5
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.9e-06 55.5 116 34.5
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 3.8e-06 55.1 96 39.6
Lalb_Chr04g0255771 Lupinus albus HOM05D007541 ORTHO05D009404 5.0e-06 54.7 41 58.5
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 5.0e-06 54.7 106 31.1
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 8.5e-06 53.9 94 36.2


User provided reference genes

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