Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g29130 Schrenkiella parvula HOM05D005975 ORTHO05D007373 0.0e+00 1219.5 607 100.0
Thhalv10018286m.g Eutrema salsugineum HOM05D005975 ORTHO05D007373 0.0e+00 1137.5 623 91.3
AL2G33760 Arabidopsis lyrata HOM05D005975 ORTHO05D007373 0.0e+00 1132.5 624 90.5
AT1G73930 Arabidopsis thaliana HOM05D005975 ORTHO05D007373 0.0e+00 1125.2 624 90.5
CARHR067040 Cardamine hirsuta HOM05D005975 ORTHO05D007373 0.0e+00 1117.8 624 89.4
A02p18950 Brassica napus HOM05D005975 ORTHO05D007373 7.2e-307 1056.6 628 85.4
BolC2t09180H Brassica oleracea HOM05D005975 ORTHO05D007373 3.6e-306 1054.3 628 85.2
BcaB05g24819 Brassica carinata HOM05D005975 ORTHO05D007373 6.1e-306 1053.5 627 84.8
BraA02t06937Z Brassica rapa HOM05D005975 ORTHO05D007373 6.1e-306 1053.5 628 85.4
BcaC03g15468 Brassica carinata HOM05D005975 ORTHO05D007373 2.2e-303 1045.0 628 84.9
C02p31490 Brassica napus HOM05D005975 ORTHO05D007373 4.9e-303 1043.9 629 84.4
Aa31LG4G4220 Aethionema arabicum HOM05D005975 ORTHO05D007373 1.3e-300 1035.8 626 83.5
THA.LOC104808292 Tarenaya hassleriana HOM05D005975 ORTHO05D007373 3.0e-292 1008.1 622 80.5
Thecc.03G028700 Theobroma cacao HOM05D005975 ORTHO05D007373 2.4e-273 945.3 652 72.7
Duzib205G1016 Durio zibethinus HOM05D005975 ORTHO05D007373 3.2e-270 934.9 656 72.0
RcHm_v2.0_Chr7g0184651 Rosa chinensis HOM05D005975 ORTHO05D007373 7.8e-269 930.2 657 71.4
MD06G1211600 Malus domestica HOM05D005975 ORTHO05D007373 2.5e-267 925.2 651 71.7
Gohir.A11G007000 Gossypium hirsutum HOM05D005975 ORTHO05D007373 4.3e-267 924.5 655 70.5
Gorai.007G007400 Gossypium raimondii HOM05D005975 ORTHO05D007373 2.8e-266 921.8 654 70.5
MD14G1222100 Malus domestica HOM05D005975 ORTHO05D007373 3.6e-266 921.4 655 70.7
FvH4_5g12680 Fragaria vesca HOM05D005975 ORTHO05D007373 6.2e-266 920.6 652 70.9
Ciclev10019197m.g Citrus clementina HOM05D005975 ORTHO05D007373 1.1e-265 919.8 657 69.9
FAN18G3396 Fragaria x ananassa HOM05D005975 ORTHO05D007373 3.1e-265 918.3 652 70.7
Manes.05G139300 Manihot esculenta HOM05D005975 ORTHO05D007373 4.0e-265 917.9 651 70.7
FAN08G0232 Fragaria x ananassa HOM05D005975 ORTHO05D007373 6.9e-265 917.1 654 70.6
PGR083G1175 Punica granatum HOM05D005975 ORTHO05D007373 6.9e-265 917.1 651 70.0
Gohir.D11G006100 Gossypium hirsutum HOM05D005975 ORTHO05D007373 9.0e-265 916.8 654 69.9
Eucgr.B00701 Eucalyptus grandis HOM05D005975 ORTHO05D007373 5.8e-264 914.1 648 70.2
FAN04G2679 Fragaria x ananassa HOM05D005975 ORTHO05D007373 1.3e-263 912.9 668 69.6
FAN13G1844 Fragaria x ananassa HOM05D005975 ORTHO05D007373 4.2e-262 907.9 663 69.4
GSVIVG01008239001 Vitis vinifera HOM05D005975 ORTHO05D007373 1.6e-261 906.0 626 73.2
Phvul.009G200500 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 1.9e-259 899.0 625 70.6
Potri.015G049900 Populus trichocarpa HOM05D005975 ORTHO05D007373 5.6e-259 897.5 656 69.5
Hma1.2p1_0592F.1_g185285 Hydrangea macrophylla HOM05D005975 ORTHO05D007373 7.3e-259 897.1 645 70.1
Lj1g0009400 Lotus japonicus HOM05D005975 ORTHO05D007373 2.1e-258 895.6 637 70.5
Ca_23135_v3 Cicer arietinum L. HOM05D005975 ORTHO05D007373 4.8e-258 894.4 627 70.5
Rhsim08G0136800 Rhododendron simsii HOM05D005975 ORTHO05D007373 2.4e-257 892.1 638 69.6
Atru.chr9.776 Acer truncatum HOM05D005975 ORTHO05D007373 9.0e-257 890.2 618 72.0
Glyma.06G210800 Glycine max HOM05D005975 ORTHO05D007373 9.0e-257 890.2 628 70.5
PSO063G1047 Papaver somniferum HOM05D005975 ORTHO05D007373 9.0e-257 890.2 654 68.8
Potri.012G060200 Populus trichocarpa HOM05D005975 ORTHO05D007373 9.0e-257 890.2 653 69.4
CiPaw.15G127100 Carya illinoinensis HOM05D005975 ORTHO05D007373 1.2e-256 889.8 673 67.8
Glyma.04G152200 Glycine max HOM05D005975 ORTHO05D007373 3.4e-256 888.3 628 70.2
Psat1g024880 Pisum sativum HOM05D005975 ORTHO05D007373 7.6e-256 887.1 629 70.1
Sabra12G0043300 Salix brachista HOM05D005975 ORTHO05D007373 6.4e-255 884.0 651 69.1
CSS0000913 Camellia sinensis var. sinensis HOM05D005975 ORTHO05D007373 1.4e-254 882.9 663 68.0
Lalb_Chr12g0197601 Lupinus albus HOM05D005975 ORTHO05D007373 2.4e-254 882.1 653 68.3
PSO782G2585 Papaver somniferum HOM05D005975 ORTHO05D007373 3.2e-254 881.7 654 68.2
TPR.G10356 Trifolium pratense HOM05D005975 ORTHO05D007373 3.5e-253 878.2 634 69.7
Glyma.17G121100 Glycine max HOM05D005975 ORTHO05D007373 6.0e-253 877.5 657 66.8
TAR622G0473 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.0e-253 877.5 658 66.6
Actinidia31028 Actinidia chinensis HOM05D005975 ORTHO05D007373 3.0e-252 875.2 643 68.7
Aqoxy3G03906 Aquilegia oxysepala HOM05D005975 ORTHO05D007373 3.9e-252 874.8 650 67.8
TAR374G1293 Trochodendron aralioides HOM05D005975 ORTHO05D007373 6.7e-252 874.0 656 67.1
Hund02524 Selenicereus undatus HOM05D005975 ORTHO05D007373 1.1e-251 873.2 653 68.5
Cpa.g.sc549.1 Carica papaya HOM05D005975 ORTHO05D007373 3.3e-251 871.7 601 73.5
Haze_18619 Corylus avellana HOM05D005975 ORTHO05D007373 7.4e-251 870.5 600 71.7
ECA232G0421 Erigeron canadensis HOM05D005975 ORTHO05D007373 1.6e-250 869.4 634 69.2
VMungo1215G0359 Vigna mungo HOM05D005975 ORTHO05D007373 1.6e-250 869.4 647 67.1
Dinv38586 Davidia involucrata HOM05D005975 ORTHO05D007373 2.1e-250 869.0 600 72.2
Peaxi162Scf00015g00726 Petunia axillaris HOM05D005975 ORTHO05D007373 1.4e-249 866.3 645 66.4
Ah.11g047090 Amaranthus hybridus HOM05D005975 ORTHO05D007373 4.0e-249 864.8 630 68.4
Sed0024013 Sechium edule HOM05D005975 ORTHO05D007373 9.0e-249 863.6 647 68.0
ClCG06G015000 Citrullus lanatus HOM05D005975 ORTHO05D007373 1.2e-248 863.2 648 67.3
QL10p022556 Quercus lobata HOM05D005975 ORTHO05D007373 2.6e-248 862.1 606 71.6
MELO3C017289.2 Cucumis melo HOM05D005975 ORTHO05D007373 3.4e-248 861.7 648 67.7
DCAR_015134 Daucus carota HOM05D005975 ORTHO05D007373 3.4e-248 861.7 627 68.7
AUR62036958 Chenopodium quinoa HOM05D005975 ORTHO05D007373 7.6e-248 860.5 653 67.5
CsaV3_1G003650 Cucumis sativus L. HOM05D005975 ORTHO05D007373 1.3e-247 859.8 647 67.9
HanXRQChr09g0269781 Helianthus annuus HOM05D005975 ORTHO05D007373 2.2e-247 859.0 637 68.3
AUR62032193 Chenopodium quinoa HOM05D005975 ORTHO05D007373 8.4e-247 857.1 650 67.4
VMungo1309G0041 Vigna mungo HOM05D005975 ORTHO05D007373 2.4e-246 855.5 579 71.5
Cc04_g07500 Coffea canephora HOM05D005975 ORTHO05D007373 1.2e-245 853.2 648 65.7
Oeu024324.1 Olea europaea HOM05D005975 ORTHO05D007373 1.2e-245 853.2 627 68.3
Sc10g0009550 Simmondsia chinensis HOM05D005975 ORTHO05D007373 1.6e-245 852.8 655 65.3
Nitab4.5_0001599g0180 Nicotiana tabacum HOM05D005975 ORTHO05D007373 1.0e-244 850.1 646 65.9
SGA_v2.0_scaffold25G10981 Striga asiatica HOM05D005975 ORTHO05D007373 5.1e-244 847.8 633 66.7
PGSC0003DMG400005625 Solanum tuberosum HOM05D005975 ORTHO05D007373 8.7e-244 847.0 653 65.1
Sopen03g038600 Solanum pennellii HOM05D005975 ORTHO05D007373 1.1e-243 846.7 653 65.1
arahy.Tifrunner.gnm1.ann1.1K5T8S Arachis hypogaea HOM05D005975 ORTHO05D007373 2.5e-243 845.5 602 69.9
Hund10002 Selenicereus undatus HOM05D005975 ORTHO05D007373 5.6e-243 844.3 651 65.9
Solyc03g119750.4 Solanum lycopersicum HOM05D005975 ORTHO05D007373 5.6e-243 844.3 653 64.8
vmacro17674 Vaccinium macrocarpon HOM05D005975 ORTHO05D007373 8.2e-242 840.5 584 71.1
Lsat_1_v5_gn_3_10441 Lactuca sativa HOM05D005975 ORTHO05D007373 1.3e-239 833.2 626 67.3
Nitab4.5_0000410g0070 Nicotiana tabacum HOM05D005975 ORTHO05D007373 2.2e-239 832.4 646 65.8
EL10Ac5g11254 Beta vulgaris HOM05D005975 ORTHO05D007373 1.0e-236 823.5 603 68.0
MBI19_g38388_MAGBIO Magnolia biondii HOM05D005975 ORTHO05D007373 2.3e-236 822.4 645 64.8
Migut.I00389 Erythranthe guttata HOM05D005975 ORTHO05D007373 1.4e-233 813.1 662 64.0
Carub.0002s2070 Capsella rubella HOM05D005975 ORTHO05D007373 1.7e-231 806.2 459 89.5
Lj9A429T54 Lonicera japonica HOM05D005975 ORTHO05D007373 3.8e-231 805.1 601 68.2
Prupe.5G217600 Prunus persica HOM05D005975 ORTHO05D007373 2.1e-229 799.3 518 77.4
CAN.G438.116 Capsicum annuum HOM05D005975 ORTHO05D007373 4.6e-229 798.1 604 65.2
MSTRG.22940 Avicennia marina HOM05D005975 ORTHO05D007373 1.8e-225 786.2 605 65.3
ATR0753G136 Amborella trichopoda HOM05D005975 ORTHO05D007373 1.4e-217 760.0 718 55.6
Phvul.003G176900 Phaseolus vulgaris HOM05D005975 ORTHO05D007373 7.0e-217 757.7 518 72.4
Sabra15G0077800 Salix brachista HOM05D005975 ORTHO05D007373 3.2e-214 748.8 634 62.0
Os03g0259700 Oryza sativa ssp. japonica HOM05D005975 ORTHO05D007373 2.7e-213 745.7 625 61.0
unitig_22.g6248 Utricularia gibba HOM05D005975 ORTHO05D007373 3.3e-211 738.8 626 61.3
SalBow5G4970 Salvia bowleyana HOM05D005975 ORTHO05D007373 1.6e-208 729.9 645 61.2
SEGI_09157 Sequoiadendron giganteum HOM05D005975 ORTHO05D007373 8.5e-199 697.6 748 50.0
Glyma.05G013100 Glycine max HOM05D005975 ORTHO05D007373 1.8e-196 689.9 624 58.3
Zm00001eb011310 Zea mays HOM05D005975 ORTHO05D007373 3.3e-190 669.1 549 61.0
Pp3c4_11450 Physcomitrium patens HOM05D005975 ORTHO05D007373 5.2e-188 661.8 748 47.2
Pp3c12_18170 Physcomitrium patens HOM05D005975 ORTHO05D007373 2.6e-187 659.4 750 47.3
COL.COLO4_22722 Corchorus olitorius HOM05D005975 ORTHO05D007373 1.0e-183 647.5 447 73.4
Mapoly0016s0160 Marchantia polymorpha HOM05D005975 ORTHO05D007373 4.3e-182 642.1 839 43.0
SMO367G0788 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 5.2e-180 635.2 604 55.0
AagrBONN_evm.TU.Sc2ySwM_228.4839 Anthoceros agrestis HOM05D005975 ORTHO05D007373 5.4e-177 625.2 525 59.4
Nn3g17719 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.1e-158 564.3 423 67.4
CDE05G1454 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 2.4e-153 546.6 520 56.3
CBR_g30105 Chara braunii HOM05D005975 ORTHO05D007373 5.8e-147 525.4 547 51.7
TAR622G1340 Trochodendron aralioides HOM05D005975 ORTHO05D007373 2.6e-123 446.8 417 57.6
CDE05G3359 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-118 431.4 364 62.1
PSO074G0001 Papaver somniferum HOM05D005975 ORTHO05D007373 2.5e-110 403.7 307 65.8
arahy.Tifrunner.gnm1.ann1.CEL6SJ Arachis hypogaea HOM05D005975 ORTHO05D007373 2.2e-109 400.6 261 73.9
BcaB05g24817 Brassica carinata HOM05D005975 ORTHO05D007373 2.9e-106 390.2 215 88.8
HPP92_016579 Vanilla planifolia HOM05D005975 ORTHO05D007373 1.1e-102 378.3 312 60.6
HPP92_016580 Vanilla planifolia HOM05D005975 ORTHO05D007373 8.0e-88 328.9 244 66.0
SMO146G0145 Selaginella moellendorffii HOM05D005975 ORTHO05D007373 8.8e-79 298.9 336 49.7
Zm00001eb237870 Zea mays HOM05D005975 ORTHO05D007373 1.3e-77 295.0 496 40.9
Zm00001eb078910 Zea mays HOM05D005975 ORTHO05D007373 1.0e-58 232.3 155 69.0
Cre14.g633500 Chlamydomonas reinhardtii HOM05D005975 ORTHO05D007373 4.2e-36 157.1 419 30.3
CDE05G0573 Ceratophyllum demersum HOM05D005975 ORTHO05D007373 1.1e-33 149.1 122 61.5
Nn3g18207 Nelumbo nucifera HOM05D005975 ORTHO05D007373 1.9e-33 148.3 139 54.7
Nn4g23789 Nelumbo nucifera HOM05D005975 ORTHO05D007373 3.8e-13 80.9 138 37.0
Cfa019814 Carpinus fangiana HOM05D005975 ORTHO05D007373 6.3e-08 63.5 57 59.6
Dinv38585 Davidia involucrata HOM05D005975 ORTHO05D007373 1.8e-07 62.0 39 74.4
Potri.001G289250 Populus trichocarpa HOM05D005975 ORTHO05D007373 1.8e-07 62.0 48 62.5
Nn1g03516 Nelumbo nucifera HOM05D005975 ORTHO05D007373 9.0e-07 59.7 45 68.9
Lj9A429T53 Lonicera japonica HOM05D005975 ORTHO05D007373 7.6e-06 56.6 42 69.0


User provided reference genes

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