Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.0e-202 709.9 365 100.0
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 5.3e-119 431.8 374 68.7
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 2.0e-94 350.1 505 46.7
BolC2t09109H Brassica oleracea HOM05D009038 ORTHO05D010897 2.9e-93 346.3 369 61.5
C02p30590 Brassica napus HOM05D009038 ORTHO05D010897 3.8e-93 345.9 369 61.5
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 4.8e-88 328.9 369 59.3
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 4.8e-88 328.9 369 59.3
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 6.9e-87 325.1 638 38.6
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 2.5e-81 306.6 638 38.4
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.1e-79 301.2 654 36.7
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 6.5e-61 238.8 360 44.4
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 3.8e-53 213.0 375 41.1
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 5.6e-44 182.6 371 39.4
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 2.2e-40 170.6 373 37.3
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 4.1e-39 166.4 182 54.4
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 6.6e-37 159.1 313 39.3
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 8.6e-37 158.7 368 36.1
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 3.3e-36 156.8 368 37.2
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 5.4e-31 139.4 372 33.3
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 5.4e-31 139.4 372 33.3
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 9.2e-31 138.7 149 57.0
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 1.2e-30 138.3 375 33.6
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 2.0e-30 137.5 372 33.3
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 5.0e-29 132.9 204 44.1
Aa31LG7G2600 Aethionema arabicum HOM05D009038 ORTHO05D010897 2.5e-20 104.0 385 30.1
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 3.0e-13 80.5 116 47.4
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 4.3e-12 76.6 129 43.4
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 7.3e-12 75.9 261 29.9
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 9.6e-12 75.5 87 47.1
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 9.6e-12 75.5 84 48.8
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.2e-11 75.1 120 45.8
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.2e-11 75.1 108 41.7
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 1.6e-11 74.7 269 32.0
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.1e-11 74.3 133 41.4
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 4.7e-11 73.2 277 31.0
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 6.2e-11 72.8 83 48.2
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 6.2e-11 72.8 126 42.9
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 8.1e-11 72.4 283 29.3
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 1.4e-10 71.6 107 41.1
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 1.4e-10 71.6 223 32.3
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 1.4e-10 71.6 87 43.7
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 2.4e-10 70.9 281 31.0
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 2.4e-10 70.9 87 47.1
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 2.4e-10 70.9 87 44.8
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 4.0e-10 70.1 337 27.9
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 4.0e-10 70.1 77 50.6
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 4.0e-10 70.1 88 48.9
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 5.2e-10 69.7 83 44.6
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 5.2e-10 69.7 87 44.8
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 5.2e-10 69.7 83 48.2
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 6.8e-10 69.3 88 47.7
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.8e-10 69.3 91 48.4
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 6.8e-10 69.3 196 32.1
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.9e-10 68.9 88 46.6
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 1.2e-09 68.6 90 46.7
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.5e-09 68.2 189 34.9
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 2.0e-09 67.8 83 45.8
BcaB07g33996 Brassica carinata HOM05D009038 ORTHO05D010897 4.4e-09 66.6 68 55.9
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 4.4e-09 66.6 88 44.3
A06p13850 Brassica napus HOM05D009038 ORTHO05D010897 5.8e-09 66.2 78 50.0
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 5.8e-09 66.2 193 32.6
BraA06t24527Z Brassica rapa HOM05D009038 ORTHO05D010897 9.9e-09 65.5 78 50.0
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 9.9e-09 65.5 83 44.6
BcaB07g34003 Brassica carinata HOM05D009038 ORTHO05D010897 1.7e-08 64.7 63 55.6
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.7e-08 64.7 182 32.4
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.7e-08 64.7 182 32.4
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 2.2e-08 64.3 282 29.4
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 2.2e-08 64.3 183 30.6
A06p13660 Brassica napus HOM05D009038 ORTHO05D010897 2.9e-08 63.9 78 48.7
A06p13800 Brassica napus HOM05D009038 ORTHO05D010897 2.9e-08 63.9 78 48.7
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 4.9e-08 63.2 293 28.0
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 8.4e-08 62.4 328 27.1
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 1.1e-07 62.0 235 29.4
BcaB07g34000 Brassica carinata HOM05D009038 ORTHO05D010897 1.9e-07 61.2 64 54.7
A06p13710 Brassica napus HOM05D009038 ORTHO05D010897 4.2e-07 60.1 74 48.6
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 4.2e-07 60.1 87 41.4
BraA06t24517Z Brassica rapa HOM05D009038 ORTHO05D010897 5.4e-07 59.7 82 46.3
BraA06t24522Z Brassica rapa HOM05D009038 ORTHO05D010897 9.3e-07 58.9 88 44.3
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.2e-06 58.5 122 37.7
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 1.2e-06 58.5 114 39.5
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 1.2e-06 58.5 132 35.6
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 1.6e-06 58.2 93 39.8
Carub.0008s0659 Capsella rubella HOM05D009038 ORTHO05D010897 2.1e-06 57.8 103 40.8
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 2.1e-06 57.8 99 35.4


User provided reference genes

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