Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 0.0e+00 1128.6 543 100.0
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 7.0e-269 930.2 492 89.6
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 4.5e-268 927.5 490 90.2
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 3.3e-266 921.4 492 88.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 5.2e-264 914.1 490 89.0
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.7e-262 909.1 490 88.2
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.8e-262 908.3 492 87.6
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.4e-261 906.0 506 86.4
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 2.9e-259 898.3 490 85.7
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.9e-245 852.4 424 94.1
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 6.2e-217 757.7 401 88.3
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 1.8e-200 703.0 485 68.0
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 3.7e-193 678.7 481 66.1
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.1e-192 675.6 492 65.9
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 6.9e-192 674.5 486 66.3
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 6.9e-192 674.5 491 65.8
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 1.7e-190 669.8 469 67.4
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 5.0e-190 668.3 451 69.2
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 1.2e-188 663.7 427 71.7
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 2.1e-188 662.9 528 61.0
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 2.0e-186 656.4 443 70.4
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 2.5e-186 656.0 493 62.9
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 3.7e-185 652.1 470 67.0
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 8.2e-185 651.0 497 62.6
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 1.1e-184 650.6 490 64.9
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.4e-184 650.2 509 61.5
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 1.8e-184 649.8 491 64.0
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 2.4e-184 649.4 471 65.0
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.1e-184 649.0 487 62.8
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 3.1e-184 649.0 490 64.5
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.0e-182 644.0 430 69.3
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.3e-182 643.7 476 64.7
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 1.3e-182 643.7 462 66.5
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 3.8e-182 642.1 486 62.6
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 6.5e-182 641.3 542 59.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 6.5e-182 641.3 488 61.9
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 6.5e-182 641.3 474 63.5
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 1.9e-181 639.8 458 67.2
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.2e-181 638.6 479 64.7
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 4.2e-181 638.6 459 64.9
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 2.7e-180 636.0 438 67.4
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 1.0e-179 634.0 471 64.5
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 1.8e-179 633.3 494 62.3
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.3e-179 632.9 439 66.3
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 3.0e-179 632.5 503 60.6
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.9e-179 632.1 473 63.6
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 2.0e-178 629.8 494 62.3
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.3e-178 629.0 488 60.9
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 5.7e-178 628.2 451 64.7
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 1.7e-177 626.7 495 61.8
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 6.3e-177 624.8 466 63.5
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 3.1e-176 622.5 494 61.7
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 4.1e-176 622.1 494 61.1
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 1.2e-175 620.5 494 60.9
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.2e-175 620.5 476 61.8
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.6e-175 619.4 480 64.2
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 2.6e-175 619.4 468 62.0
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 5.9e-175 618.2 496 60.3
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 2.2e-174 616.3 452 64.8
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 1.6e-172 610.1 491 60.5
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 1.6e-172 610.1 486 61.5
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.0e-171 607.4 463 62.2
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.9e-171 605.5 491 61.1
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 8.8e-171 604.4 478 59.0
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.5e-170 603.6 473 61.9
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 2.0e-170 603.2 491 61.1
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 2.8e-169 599.4 379 72.6
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.4e-168 597.0 497 58.4
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 4.5e-167 592.0 459 61.9
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 1.1e-165 587.4 479 58.5
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 9.4e-165 584.3 437 63.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 6.1e-164 581.6 510 56.9
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.8e-163 580.1 486 59.7
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 8.8e-163 577.8 406 66.0
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 8.8e-163 577.8 424 64.4
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.2e-162 577.4 405 67.7
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 1.5e-162 577.0 379 70.7
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 7.5e-162 574.7 396 67.2
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 4.5e-159 565.5 435 62.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 1.2e-156 557.4 469 58.0
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 5.2e-155 552.0 400 64.8
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.5e-154 550.4 389 65.8
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.4e-154 549.3 522 55.4
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 4.9e-153 545.4 474 57.0
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 7.7e-151 538.1 396 62.6
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 2.5e-149 533.1 469 57.1
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 5.0e-142 508.8 342 69.6
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 4.7e-140 502.3 437 57.2
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.4e-139 500.7 515 52.8
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 9.8e-138 494.6 309 71.2
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.2e-137 493.4 394 60.9
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 1.2e-135 487.6 428 56.5
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.3e-134 483.4 539 49.5
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 2.5e-133 479.9 327 68.2
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 7.3e-133 478.4 360 63.1
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 2.9e-129 466.5 365 57.8
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 3.7e-129 466.1 243 90.1
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-127 461.1 243 88.9
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.1e-123 448.0 357 56.3
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 2.3e-123 446.8 357 60.5
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.7e-121 440.7 334 59.0
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.4e-120 435.6 382 58.1
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 7.3e-109 398.7 268 70.9
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 1.1e-107 394.8 238 82.8
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-106 391.3 231 83.5
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 4.6e-95 352.8 246 68.7
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.3e-94 350.5 246 68.3
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 2.1e-92 344.0 383 46.5
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 4.5e-90 336.3 373 44.5
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 8.4e-89 332.0 320 51.9
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 3.2e-88 330.1 238 64.7
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 3.2e-88 330.1 238 64.7
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 2.3e-86 323.9 294 53.7
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 3.1e-83 313.5 178 77.5
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 2.1e-71 274.2 376 39.1
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 1.2e-63 248.4 328 40.2
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 3.6e-55 220.3 178 59.6
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 6.1e-55 219.5 194 56.7
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 1.5e-53 214.9 224 50.9
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 2.9e-41 174.1 108 69.4
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.1e-40 172.2 374 32.6
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 9.8e-37 159.1 98 68.4
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 9.5e-32 142.5 339 32.2
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 3.0e-30 137.5 74 78.4
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.9e-28 131.0 73 76.7
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.4e-22 112.1 55 85.5
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 9.8e-21 105.9 369 26.0
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 1.3e-20 105.5 126 43.7
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 2.1e-15 88.2 109 45.0
Prupe.8G040900 Prunus persica HOM05D005921 ORTHO05D007374 2.3e-06 58.2 98 38.8
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 4.0e-06 57.4 81 32.1


User provided reference genes

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