Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.4e-187 658.7 329 100.0
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.1e-168 596.7 329 88.8
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 9.4e-168 593.6 329 88.4
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 5.7e-165 584.3 330 88.2
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 6.3e-164 580.9 329 86.0
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 8.2e-164 580.5 330 86.4
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.8e-163 579.3 331 87.9
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 5.3e-163 577.8 330 87.6
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 9.1e-163 577.0 329 86.3
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 2.5e-160 568.9 320 89.4
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 4.7e-159 564.7 320 89.1
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 3.0e-158 562.0 320 88.4
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 2.9e-153 545.4 329 81.8
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 2.1e-135 486.1 324 73.8
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.9e-115 419.9 322 63.7
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 2.5e-112 409.5 310 64.2
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.5e-112 409.5 319 62.1
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 8.1e-111 404.4 293 66.6
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 1.4e-110 403.7 298 64.1
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 1.2e-109 400.6 282 67.7
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 1.5e-109 400.2 332 59.0
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 2.0e-109 399.8 319 60.5
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 2.0e-109 399.8 319 61.8
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 9.9e-109 397.5 311 63.3
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 2.9e-108 396.0 326 59.5
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 4.9e-108 395.2 300 61.7
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 6.4e-108 394.8 309 59.9
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 8.4e-108 394.4 321 61.1
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 8.4e-108 394.4 315 61.9
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.1e-107 394.0 347 57.6
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.4e-107 393.7 315 61.6
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 1.9e-107 393.3 306 62.7
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 4.2e-107 392.1 298 61.7
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 1.6e-106 390.2 306 62.7
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 2.7e-106 389.4 303 61.7
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 6.0e-106 388.3 300 60.3
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 1.0e-105 387.5 337 58.5
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 2.3e-105 386.3 321 60.4
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 3.0e-105 386.0 309 62.1
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 5.1e-105 385.2 294 60.2
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 6.6e-105 384.8 331 59.2
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 8.7e-105 384.4 317 58.0
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 4.3e-104 382.1 323 57.6
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 7.3e-104 381.3 293 61.8
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 9.6e-104 380.9 303 59.7
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 2.8e-103 379.4 314 58.9
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 8.1e-103 377.9 323 57.0
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.4e-102 377.1 294 60.9
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 6.9e-102 374.8 298 60.7
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 1.2e-101 374.0 318 57.9
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.0e-101 373.2 303 59.4
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 2.2e-100 369.8 310 55.8
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 4.2e-99 365.5 285 61.8
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 7.1e-99 364.8 304 55.9
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 3.5e-98 362.5 294 59.2
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-97 360.1 271 64.9
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 3.9e-97 359.0 325 55.4
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 5.1e-97 358.6 321 54.8
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.5e-96 357.1 285 60.7
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 3.3e-96 355.9 293 56.0
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 8.1e-95 351.3 269 62.1
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 1.1e-94 350.9 316 54.7
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 1.8e-94 350.1 321 53.0
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 3.1e-94 349.4 302 54.0
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 3.2e-91 339.3 321 52.3
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.2e-90 337.4 256 64.1
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 4.6e-90 335.5 380 46.8
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.8e-89 333.6 326 54.0
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 8.7e-89 331.3 304 52.0
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.5e-88 330.5 268 61.2
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.8e-87 326.2 319 50.8
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 6.2e-87 325.1 326 53.1
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.3e-84 317.4 299 49.8
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.1e-83 314.3 300 52.3
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 3.9e-81 305.8 308 51.9
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 7.6e-77 291.6 326 48.2
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 3.3e-72 276.2 316 42.4
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 5.7e-72 275.4 360 47.5
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 8.2e-71 271.6 342 43.9
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 3.4e-69 266.2 212 60.4
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 3.4e-69 266.2 203 63.1
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 3.4e-69 266.2 211 60.7
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 7.7e-69 265.0 205 60.0
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 2.9e-68 263.1 270 53.0
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 1.6e-66 257.3 210 57.6
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 3.0e-65 253.1 205 59.0
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.2e-63 245.0 278 50.7
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 2.5e-59 233.4 241 49.4
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 2.6e-53 213.4 292 37.7
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 7.7e-53 211.8 200 56.5
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.0e-49 201.4 287 43.2
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 1.7e-47 194.1 123 69.1
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 2.0e-45 187.2 288 38.5
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 1.4e-41 174.5 211 42.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 4.0e-41 172.9 184 50.5
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.4e-33 147.9 126 52.4
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 2.3e-33 147.1 295 29.8
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 3.0e-33 146.7 99 68.7
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 1.7e-31 141.0 167 45.5
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 4.1e-30 136.3 110 60.0
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 2.3e-28 130.6 119 52.1
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 6.6e-28 129.0 91 63.7
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.1e-26 124.0 116 54.3
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 8.0e-26 122.1 89 66.3
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 1.0e-25 121.7 162 37.0
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.3e-25 120.6 89 65.2
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 5.2e-25 119.4 284 28.2
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 1.5e-24 117.9 79 67.1
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 9.8e-24 115.2 80 60.0
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.2e-21 108.2 178 39.3
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 1.7e-15 87.8 83 51.8
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.4e-14 84.0 63 58.7
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 2.5e-11 73.9 47 76.6
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 7.3e-11 72.4 142 34.5
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 5.2e-09 66.2 152 32.9
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.8e-09 65.9 152 32.9
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.8e-09 65.9 152 32.9
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 1.7e-07 61.2 37 75.7
Pp3c7_10090 Physcomitrium patens HOM05D006784 ORTHO05D008508 7.1e-06 55.8 166 29.5


User provided reference genes

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