Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g26320 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.0e-203 712.2 364 100.0
BraA07t31315Z Brassica rapa HOM05D005473 ORTHO05D006543 1.6e-155 553.1 364 78.6
AL2G30760 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.2e-147 526.9 364 76.9
CARHR064450 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.7e-146 523.1 366 75.4
Carub.0002s1804 Capsella rubella HOM05D005473 ORTHO05D006543 1.6e-144 516.5 365 76.7
AT1G71150 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 6.8e-143 511.1 365 75.6
BcaB03g14874 Brassica carinata HOM05D005473 ORTHO05D006543 3.0e-138 495.7 319 81.2
BcaC08g46554 Brassica carinata HOM05D005473 ORTHO05D006543 5.0e-138 495.0 356 74.4
BolC6t39580H Brassica oleracea HOM05D005473 ORTHO05D006543 5.2e-135 485.0 351 73.5
Aa31LG7G6980 Aethionema arabicum HOM05D005473 ORTHO05D006543 2.2e-133 479.6 371 68.7
AL1G36530 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 1.6e-131 473.4 363 69.1
Carub.0001s2247 Capsella rubella HOM05D005473 ORTHO05D006543 2.1e-128 463.0 363 67.2
CARHR023350 Cardamine hirsuta HOM05D005473 ORTHO05D006543 1.8e-127 459.9 363 66.7
A09p41740 Brassica napus HOM05D005473 ORTHO05D006543 6.8e-127 458.0 363 66.4
AT1G22970 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 9.9e-126 454.1 363 66.7
BraA09t39663Z Brassica rapa HOM05D005473 ORTHO05D006543 9.9e-126 454.1 363 66.1
Thhalv10008033m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 2.2e-125 453.0 363 67.2
A07p37530 Brassica napus HOM05D000048 ORTHO05D006543 1.6e-123 446.8 362 66.9
C05p22180 Brassica napus HOM05D005473 ORTHO05D006543 2.3e-122 443.0 366 64.5
BcaB07g32295 Brassica carinata HOM05D005473 ORTHO05D006543 6.6e-122 441.4 365 65.8
Sp1g20430 Schrenkiella parvula HOM05D005473 ORTHO05D006543 2.4e-119 433.0 363 64.7
BcaC05g26209 Brassica carinata HOM05D005473 ORTHO05D006543 2.9e-117 426.0 366 62.3
BolC5t30918H Brassica oleracea HOM05D005473 ORTHO05D006543 4.9e-117 425.2 366 62.0
Thhalv10018995m.g Eutrema salsugineum HOM05D005473 ORTHO05D006543 8.7e-114 414.5 274 82.8
THA.LOC104812031 Tarenaya hassleriana HOM05D005473 ORTHO05D006543 9.9e-110 401.0 299 67.9
Cpa.g.sc65.93 Carica papaya HOM05D005473 ORTHO05D006543 1.9e-105 386.7 361 57.3
Gohir.D05G319500 Gossypium hirsutum HOM05D005473 ORTHO05D006543 2.0e-102 376.7 368 53.5
Gorai.009G342800 Gossypium raimondii HOM05D005473 ORTHO05D006543 3.4e-102 375.9 368 53.5
COL.COLO4_20121 Corchorus olitorius HOM05D005473 ORTHO05D006543 4.2e-100 369.0 366 52.2
Sabra08G0095200 Salix brachista HOM05D005473 ORTHO05D006543 1.2e-99 367.5 363 54.3
Sabra16G0274100 Salix brachista HOM05D005473 ORTHO05D006543 2.1e-99 366.7 363 54.3
Potri.008G126400 Populus trichocarpa HOM05D005473 ORTHO05D006543 3.5e-99 365.9 365 53.4
Thecc.02G215500 Theobroma cacao HOM05D005473 ORTHO05D006543 7.9e-99 364.8 368 51.9
Gohir.A05G317600 Gossypium hirsutum HOM05D005473 ORTHO05D006543 6.7e-98 361.7 368 52.2
QL01p003042 Quercus lobata HOM05D005473 ORTHO05D006543 3.3e-97 359.4 366 50.8
Ciclev10015542m.g Citrus clementina HOM05D005473 ORTHO05D006543 1.3e-96 357.5 365 52.3
Ca_30210_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 2.1e-96 356.7 365 51.2
Dinv04903 Davidia involucrata HOM05D005473 ORTHO05D006543 2.1e-96 356.7 366 53.3
Atru.chr11.335 Acer truncatum HOM05D005473 ORTHO05D006543 4.8e-96 355.5 362 50.8
Prupe.1G320100 Prunus persica HOM05D005473 ORTHO05D006543 6.2e-96 355.1 366 51.9
Manes.14G109600 Manihot esculenta HOM05D005473 ORTHO05D006543 8.1e-96 354.8 366 52.2
TAR622G1045 Trochodendron aralioides HOM05D005473 ORTHO05D006543 1.1e-95 354.4 367 50.4
GSVIVG01011804001 Vitis vinifera HOM05D005473 ORTHO05D006543 2.4e-95 353.2 368 51.1
Lj5g0028089 Lotus japonicus HOM05D005473 ORTHO05D006543 6.9e-95 351.7 366 50.8
CiPaw.05G245400 Carya illinoinensis HOM05D005473 ORTHO05D006543 2.6e-94 349.7 367 51.2
SalBow8G1667 Salvia bowleyana HOM05D005473 ORTHO05D006543 2.6e-94 349.7 364 50.8
RcHm_v2.0_Chr4g0434011 Rosa chinensis HOM05D005473 ORTHO05D006543 4.5e-94 349.0 363 51.8
Hma1.2p1_0114F.1_g055460 Hydrangea macrophylla HOM05D005473 ORTHO05D006543 1.0e-93 347.8 369 52.0
FAN12G0751 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.7e-93 347.1 363 50.4
FAN12G1468 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.7e-93 347.1 363 50.4
FvH4_4g26380 Fragaria vesca HOM05D005473 ORTHO05D006543 2.2e-93 346.7 363 50.1
FAN17G2750 Fragaria x ananassa HOM05D005473 ORTHO05D006543 2.9e-93 346.3 363 50.4
Cfa015813 Carpinus fangiana HOM05D000048 ORTHO05D000207 4.9e-93 345.5 366 49.7
arahy.Tifrunner.gnm1.ann1.GULV0C Arachis hypogaea HOM05D005473 ORTHO05D006543 6.4e-93 345.1 365 49.9
CSS0031478 Camellia sinensis var. sinensis HOM05D005473 ORTHO05D006543 6.4e-93 345.1 364 51.1
FAN22G1873 Fragaria x ananassa HOM05D005473 ORTHO05D006543 1.4e-92 344.0 363 49.9
arahy.Tifrunner.gnm1.ann1.45PR62 Arachis hypogaea HOM05D005473 ORTHO05D006543 2.5e-92 343.2 365 49.6
VMungo0720G0454 Vigna mungo HOM05D005473 ORTHO05D006543 7.1e-92 341.7 369 49.3
FAN07G2597 Fragaria x ananassa HOM05D005473 ORTHO05D006543 4.6e-91 339.0 363 49.9
Atru.chr11.342 Acer truncatum HOM05D005473 ORTHO05D006543 6.0e-91 338.6 343 51.6
TPR.G4908 Trifolium pratense HOM05D005473 ORTHO05D006543 6.0e-91 338.6 363 50.1
Glyma.20G123200 Glycine max HOM05D005473 ORTHO05D006543 7.9e-91 338.2 366 49.2
MSTRG.875 Avicennia marina HOM05D005473 ORTHO05D006543 1.0e-90 337.8 364 50.0
Lalb_Chr06g0165731 Lupinus albus HOM05D005473 ORTHO05D006543 1.3e-90 337.4 361 49.6
CAN.G1489.13 Capsicum annuum HOM05D005473 ORTHO05D006543 1.8e-90 337.0 366 50.5
AL1G36540 Arabidopsis lyrata HOM05D005473 ORTHO05D006543 2.3e-90 336.7 350 55.1
Medtr1g109070 Medicago truncatula HOM05D005473 ORTHO05D006543 3.0e-90 336.3 365 48.5
Phvul.007G034400 Phaseolus vulgaris HOM05D005473 ORTHO05D006543 3.0e-90 336.3 373 48.8
PGR119G2355 Punica granatum HOM05D005473 ORTHO05D006543 3.0e-90 336.3 366 49.7
AT1G22980 Arabidopsis thaliana HOM05D005473 ORTHO05D006543 1.1e-89 334.3 362 53.3
Cc11_g09260 Coffea canephora HOM05D005473 ORTHO05D006543 3.3e-89 332.8 362 50.3
Haze_00685 Corylus avellana HOM05D005473 ORTHO05D006543 4.3e-89 332.4 408 46.3
Psat6g222680 Pisum sativum HOM05D005473 ORTHO05D006543 4.3e-89 332.4 364 49.2
PGSC0003DMG400030516 Solanum tuberosum HOM05D005473 ORTHO05D006543 1.6e-88 330.5 363 49.3
vmacro01424 Vaccinium macrocarpon HOM05D005473 ORTHO05D006543 3.7e-88 329.3 371 49.3
Sopen05g004360 Solanum pennellii HOM05D005473 ORTHO05D006543 6.2e-88 328.6 363 49.3
Solyc05g008520.3 Solanum lycopersicum HOM05D005473 ORTHO05D006543 1.1e-87 327.8 363 49.3
Oeu059511.2 Olea europaea HOM05D005473 ORTHO05D006543 5.3e-87 325.5 351 50.1
Eucgr.K00649 Eucalyptus grandis HOM05D005473 ORTHO05D006543 9.0e-87 324.7 364 48.6
Nn4g24024 Nelumbo nucifera HOM05D005473 ORTHO05D006543 1.2e-86 324.3 367 48.2
Migut.L01020 Erythranthe guttata HOM05D005473 ORTHO05D006543 4.9e-85 318.9 359 49.9
Sed0015008 Sechium edule HOM05D005473 ORTHO05D006543 8.4e-85 318.2 364 47.3
ClCG05G022330 Citrullus lanatus HOM05D005473 ORTHO05D006543 1.4e-84 317.4 366 48.6
Lsat_1_v5_gn_3_54040 Lactuca sativa HOM05D005473 ORTHO05D006543 1.4e-84 317.4 367 47.4
ECA246G4292 Erigeron canadensis HOM05D005473 ORTHO05D006543 3.2e-84 316.2 373 48.0
Lj3A877T94 Lonicera japonica HOM05D005473 ORTHO05D006543 1.6e-83 313.9 404 46.0
Rhsim12G0088500 Rhododendron simsii HOM05D005473 ORTHO05D006543 2.7e-83 313.2 427 42.9
CsaV3_5G034770 Cucumis sativus L. HOM05D005473 ORTHO05D006543 3.5e-83 312.8 366 47.0
Peaxi162Scf00205g01024 Petunia axillaris HOM05D000048 ORTHO05D006543 1.3e-82 310.8 332 50.6
CANSAT01G2653 Cannabis sativa HOM05D005473 ORTHO05D006543 3.9e-82 309.3 364 47.8
AUR62002772 Chenopodium quinoa HOM05D005473 ORTHO05D006543 5.1e-82 308.9 362 48.6
AUR62037258 Chenopodium quinoa HOM05D005473 ORTHO05D006543 3.3e-81 306.2 377 48.5
Ca_23703_v3 Cicer arietinum L. HOM05D005473 ORTHO05D006543 7.4e-81 305.1 365 45.8
PSO017G4790 Papaver somniferum HOM05D005473 ORTHO05D006543 2.2e-80 303.5 364 46.2
Actinidia31990 Actinidia chinensis HOM05D005473 ORTHO05D006543 4.8e-80 302.4 325 52.3
EL10Ac6g14276 Beta vulgaris HOM05D005473 ORTHO05D006543 8.2e-80 301.6 392 43.9
HanXRQChr15g0477691 Helianthus annuus HOM05D005473 ORTHO05D006543 2.4e-79 300.1 368 44.8
Dinv16166 Davidia involucrata HOM05D005473 ORTHO05D006543 9.0e-79 298.1 363 46.3
Sc11g0003970 Simmondsia chinensis HOM05D005473 ORTHO05D006543 1.2e-78 297.7 349 47.0
SGA_v2.0_scaffold50G18546 Striga asiatica HOM05D005473 ORTHO05D006543 1.2e-78 297.7 366 46.2
Ah.03g138500 Amaranthus hybridus HOM05D005473 ORTHO05D006543 1.5e-78 297.4 374 46.0
PSO782G5692 Papaver somniferum HOM05D005473 ORTHO05D006543 1.1e-76 291.2 367 45.2
PSO478G0709 Papaver somniferum HOM05D005473 ORTHO05D006543 4.2e-76 289.3 369 45.5
Nitab4.5_0013146g0010 Nicotiana tabacum HOM05D005473 ORTHO05D006543 2.1e-75 287.0 308 50.6
Potri.010G117100 Populus trichocarpa HOM05D005473 ORTHO05D006543 1.0e-74 284.6 306 50.7
A01p19890 Brassica napus HOM05D005473 ORTHO05D006543 1.8e-74 283.9 235 65.1
Aqoxy5G03875 Aquilegia oxysepala HOM05D005473 ORTHO05D006543 2.3e-74 283.5 361 42.9
DCAR_023622 Daucus carota HOM05D005473 ORTHO05D006543 2.5e-73 280.0 294 53.4
Duzib268G1740 Durio zibethinus HOM05D005473 ORTHO05D006543 3.3e-73 279.6 284 52.5
MBI16_g29822_MAGBIO Magnolia biondii HOM05D005473 ORTHO05D006543 3.3e-73 279.6 374 43.0
CDE07G0910 Ceratophyllum demersum HOM05D005473 ORTHO05D006543 5.3e-71 272.3 364 42.0
TWI79G1332 Tripterygium wilfordii HOM05D005473 ORTHO05D006543 1.3e-69 267.7 359 44.6
MELO3C012289.2 Cucumis melo HOM05D005473 ORTHO05D006543 6.5e-69 265.4 308 48.7
ATR0691G101 Amborella trichopoda HOM05D005473 ORTHO05D006543 4.2e-68 262.7 370 41.1
HPP92_020137 Vanilla planifolia HOM05D005473 ORTHO05D006543 2.1e-67 260.4 356 40.7
C06p45250 Brassica napus HOM05D005473 ORTHO05D006543 4.7e-67 259.2 189 75.1
unitig_749.g14005 Utricularia gibba HOM05D005473 ORTHO05D006543 2.0e-65 253.8 290 50.7
Os05g0554500 Oryza sativa ssp. japonica HOM05D005473 ORTHO05D006543 3.3e-65 253.1 362 40.6
Zm00001eb295130 Zea mays HOM05D005473 ORTHO05D006543 1.5e-62 244.2 369 40.4
Thecc.02G215400 Theobroma cacao HOM05D005473 ORTHO05D006543 8.2e-56 221.9 240 49.6
SEGI_09717 Sequoiadendron giganteum HOM05D005473 ORTHO05D006543 8.8e-50 201.8 312 40.1
Glyma.10G267900 Glycine max HOM05D005473 ORTHO05D006543 2.6e-49 200.3 238 47.1
C06p45240 Brassica napus HOM05D000048 ORTHO05D000207 4.4e-49 199.5 125 77.6
Migut.O00950 Erythranthe guttata HOM05D005473 ORTHO05D006543 1.0e-45 188.3 241 46.9
HanXRQChr15g0477701 Helianthus annuus HOM05D005473 ORTHO05D006543 1.7e-45 187.6 350 35.1
SMO202G0044 Selaginella moellendorffii HOM05D005473 ORTHO05D006543 6.5e-45 185.7 305 39.0
Actinidia33629 Actinidia chinensis HOM05D005473 ORTHO05D006543 5.5e-44 182.6 235 45.5
Duzib251G0055 Durio zibethinus HOM05D005473 ORTHO05D006543 1.3e-40 171.4 277 40.8
Rhsim03G0134600 Rhododendron simsii HOM05D005473 ORTHO05D006543 1.1e-36 158.3 238 43.3
PSO384G2466 Papaver somniferum HOM05D005473 ORTHO05D006543 3.6e-35 153.3 300 33.3
AagrBONN_evm.TU.Sc2ySwM_344.5342 Anthoceros agrestis HOM05D005473 ORTHO05D006543 4.7e-35 152.9 327 29.4
Pp3c15_5840 Physcomitrium patens HOM05D005473 ORTHO05D006543 1.0e-34 151.8 422 26.3
PSO339G4228 Papaver somniferum HOM05D005473 ORTHO05D006543 1.2e-25 121.7 366 27.9
Hund25017 Selenicereus undatus HOM05D005473 ORTHO05D006543 8.3e-24 115.5 138 42.0
Oeu036129.1 Olea europaea HOM05D005473 ORTHO05D006543 3.9e-21 106.7 149 46.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 6.6e-21 105.9 246 31.7
MCO05G366 Micromonas commoda HOM05D005473 ORTHO05D006543 3.1e-10 70.5 229 26.2
CAN.G572.16 Capsicum annuum HOM05D005473 ORTHO05D006543 5.4e-07 59.7 108 33.3
MD16G1034500 Malus domestica HOM05D005473 ORTHO05D006543 9.2e-07 58.9 56 46.4
MSTRG.15906 Avicennia marina HOM05D005473 ORTHO05D006543 1.2e-06 58.5 55 43.6
MD13G1032300 Malus domestica HOM05D005473 ORTHO05D006543 4.6e-06 56.6 56 42.9


User provided reference genes

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