Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.7e-149 531.2 271 100.0
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 2.7e-130 469.2 272 88.6
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 3.9e-129 465.3 271 88.6
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 4.7e-127 458.4 282 87.6
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 6.2e-127 458.0 281 87.2
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 8.1e-127 457.6 281 87.2
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 1.2e-125 453.8 282 86.5
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 3.2e-123 445.7 283 84.5
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.6e-122 443.4 280 83.9
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 3.9e-121 438.7 272 86.0
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 4.3e-120 435.3 281 84.0
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 3.5e-114 415.6 271 80.8
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 1.1e-102 377.5 291 72.9
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.8e-78 297.0 280 60.0
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.5e-77 293.9 279 60.2
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 5.0e-76 288.9 286 58.7
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 8.5e-76 288.1 286 61.2
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 3.2e-75 286.2 286 58.7
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 3.2e-75 286.2 280 58.6
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 4.2e-75 285.8 278 59.7
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.7e-74 283.1 280 58.9
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.4e-73 280.8 284 58.8
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 2.3e-73 280.0 290 56.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 2.3e-73 280.0 290 56.2
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 3.3e-72 276.2 294 55.4
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 5.7e-72 275.4 280 56.1
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.3e-71 271.9 272 58.1
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 8.2e-71 271.6 292 57.5
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 1.4e-70 270.8 281 58.7
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 2.4e-70 270.0 281 56.6
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.1e-70 269.2 283 55.1
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 9.1e-70 268.1 284 56.3
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 9.1e-70 268.1 280 57.1
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.0e-69 266.9 281 57.3
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 2.6e-69 266.5 279 55.9
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 3.4e-69 266.2 282 55.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 4.5e-69 265.8 282 55.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.0e-68 264.6 282 55.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 1.3e-68 264.2 281 56.6
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-68 264.2 281 56.6
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.3e-68 264.2 282 55.7
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-68 264.2 285 56.5
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 2.9e-68 263.1 283 55.1
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.8e-68 262.7 282 53.2
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 2.5e-67 260.0 281 56.6
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 9.4e-67 258.1 299 54.5
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 2.7e-66 256.5 268 55.2
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 1.0e-65 254.6 284 52.8
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.8e-65 253.8 288 53.5
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.3e-65 253.4 282 53.2
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 3.0e-65 253.1 279 54.8
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 3.9e-65 252.7 291 52.9
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 8.8e-65 251.5 291 53.6
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 1.1e-64 251.1 300 50.0
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 1.1e-64 251.1 302 51.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 2.6e-64 250.0 281 53.0
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.3e-64 249.6 288 54.2
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 1.3e-63 247.7 290 54.5
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 8.2e-63 245.0 290 51.7
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 1.4e-62 244.2 287 54.0
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.5e-61 240.7 289 52.9
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.6e-61 240.0 290 52.8
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.7e-61 238.4 289 52.9
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 7.7e-61 238.4 285 53.7
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 7.7e-61 238.4 290 52.4
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 7.7e-61 238.4 283 52.7
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.3e-60 237.7 290 50.3
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.2e-60 236.9 279 50.5
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 8.5e-60 235.0 292 51.7
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 8.5e-60 235.0 290 52.1
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.1e-59 234.6 273 52.4
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.9e-59 233.8 283 50.5
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 2.5e-59 233.4 296 49.0
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 5.5e-59 232.3 281 53.0
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 7.2e-59 231.9 302 49.7
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 9.4e-59 231.5 297 49.5
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.2e-58 231.1 326 47.9
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 1.2e-58 231.1 326 47.9
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.2e-58 231.1 318 50.6
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 2.7e-58 229.9 282 51.4
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 4.7e-58 229.2 295 51.2
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 1.0e-57 228.0 300 46.7
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 1.8e-57 227.3 209 61.2
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.8e-57 227.3 287 50.9
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.1e-56 224.6 281 50.2
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 2.0e-56 223.8 282 51.4
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.6e-56 223.4 293 49.8
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.3e-56 223.0 293 48.1
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 1.3e-55 221.1 298 49.0
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 2.2e-55 220.3 277 49.8
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.8e-55 219.9 289 48.4
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 3.7e-55 219.5 294 49.3
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 1.1e-54 218.0 290 49.3
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 1.1e-54 218.0 294 49.0
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 1.4e-54 217.6 296 49.0
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 1.8e-54 217.2 301 48.8
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 2.4e-54 216.9 289 50.5
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.4e-54 216.9 303 48.2
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.4e-54 216.9 268 50.4
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 2.4e-54 216.9 283 48.8
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 7.0e-54 215.3 296 49.3
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 9.1e-54 214.9 307 46.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 1.6e-53 214.2 296 46.3
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 5.9e-53 212.2 289 48.8
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.0e-52 211.5 243 52.7
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 3.8e-52 209.5 297 48.1
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 6.5e-52 208.8 277 49.1
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 8.5e-52 208.4 295 49.2
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 1.1e-51 208.0 299 49.5
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 2.1e-50 203.8 311 46.3
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 2.1e-50 203.8 292 47.3
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 2.1e-50 203.8 199 56.3
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 6.1e-50 202.2 250 51.2
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 1.0e-49 201.4 266 50.8
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 1.8e-49 200.7 283 47.7
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.8e-49 200.7 162 63.6
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 4.0e-49 199.5 289 46.4
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 4.0e-49 199.5 296 43.9
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 6.7e-49 198.7 273 48.4
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.6e-48 196.8 245 50.6
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 4.4e-48 196.1 212 55.7
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 1.3e-47 194.5 213 55.4
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.7e-47 193.0 159 62.3
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 8.2e-47 191.8 280 45.0
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 8.2e-47 191.8 296 47.3
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 9.1e-46 188.3 291 45.4
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 2.0e-45 187.2 173 61.8
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.0e-45 187.2 290 45.2
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 1.0e-44 184.9 266 47.7
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 1.3e-44 184.5 172 65.1
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.3e-44 184.5 341 40.5
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 6.5e-44 182.2 132 68.9
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 1.1e-43 181.4 274 42.3
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 1.6e-42 177.6 279 44.1
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 1.6e-42 177.6 182 53.8
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 3.0e-41 173.3 287 44.6
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 3.7e-39 166.4 160 57.5
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 8.3e-39 165.2 277 40.8
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.4e-38 164.5 275 43.6
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.4e-38 163.7 124 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 1.6e-37 161.0 119 63.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 2.7e-37 160.2 271 40.6
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 1.5e-35 154.5 297 40.1
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 7.2e-35 152.1 157 54.1
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 1.8e-33 147.5 273 39.2
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 6.8e-33 145.6 270 39.6
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.2e-32 144.8 117 62.4
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 2.6e-32 143.7 117 62.4
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.1e-30 136.7 226 44.7
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 5.9e-29 132.5 268 36.6
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 3.3e-27 126.7 125 55.2
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 4.0e-25 119.8 196 36.7
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 4.1e-22 109.8 77 67.5
MELO3C018369.2 Cucumis melo HOM05D004323 ORTHO05D005140 8.1e-10 68.9 125 44.8
AL7G52902 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 3.7e-07 60.1 53 52.8
FAN16G1718 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-06 57.0 48 52.1


User provided reference genes

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