Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25750 Schrenkiella parvula HOM05D005436 ORTHO05D006215 3.6e-154 548.5 345 100.0
AL2G30010 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.1e-129 467.2 346 87.3
A07p37030 Brassica napus HOM05D005436 ORTHO05D006215 1.5e-128 463.4 346 88.2
BraA07t31265Z Brassica rapa HOM05D005436 ORTHO05D006215 1.0e-127 460.7 347 87.3
C06p44590 Brassica napus HOM05D005436 ORTHO05D006215 6.5e-127 458.0 346 87.6
BolC6t39523H Brassica oleracea HOM05D005436 ORTHO05D006215 1.2e-125 453.8 347 86.7
Carub.0002s1732 Capsella rubella HOM05D005436 ORTHO05D006215 1.3e-124 450.3 347 85.3
CARHR063810 Cardamine hirsuta HOM05D005436 ORTHO05D006215 1.1e-123 447.2 345 85.2
Thhalv10018848m.g Eutrema salsugineum HOM05D005436 ORTHO05D006215 6.9e-121 438.0 332 87.3
AT1G70590 Arabidopsis thaliana HOM05D005436 ORTHO05D006215 1.6e-117 426.8 354 80.8
Aa31LG4G10370 Aethionema arabicum HOM05D005436 ORTHO05D006215 1.3e-114 417.2 350 81.1
THA.LOC104822162 Tarenaya hassleriana HOM05D005436 ORTHO05D006215 7.7e-112 407.9 345 79.1
COL.COLO4_24251 Corchorus olitorius HOM05D005436 ORTHO05D006215 1.1e-94 350.9 346 71.1
Gorai.009G335800 Gossypium raimondii HOM05D005436 ORTHO05D006215 3.2e-94 349.4 345 72.2
Thecc.02G258400 Theobroma cacao HOM05D005436 ORTHO05D006215 1.2e-93 347.4 345 70.7
Gohir.A05G312700 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.7e-93 345.5 345 71.0
Potri.010G045300 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.4e-91 339.3 345 70.1
TAR629G0589 Trochodendron aralioides HOM05D005436 ORTHO05D006215 3.4e-91 339.3 359 67.4
Manes.13G025400 Manihot esculenta HOM05D005436 ORTHO05D006215 5.7e-91 338.6 344 70.3
TAR629G3419 Trochodendron aralioides HOM05D005436 ORTHO05D006215 5.7e-91 338.6 359 66.6
Duzib251G0682 Durio zibethinus HOM05D005436 ORTHO05D006215 1.3e-90 337.4 345 70.1
Cfa009203 Carpinus fangiana HOM05D005436 ORTHO05D006215 4.8e-90 335.5 344 68.0
Atru.chr11.2113 Acer truncatum HOM05D005436 ORTHO05D006215 1.1e-89 334.3 348 68.1
Atru.chr11.2128 Acer truncatum HOM05D005436 ORTHO05D006215 1.1e-89 334.3 348 68.1
Lsat_1_v5_gn_8_150780 Lactuca sativa HOM05D005436 ORTHO05D006215 5.4e-89 332.0 345 69.0
HanXRQChr08g0208111 Helianthus annuus HOM05D005436 ORTHO05D006215 2.0e-88 330.1 350 68.3
BcaB03g14825 Brassica carinata HOM05D005436 ORTHO05D006215 2.7e-88 329.7 209 82.8
Rhsim12G0040900 Rhododendron simsii HOM05D005436 ORTHO05D006215 5.9e-88 328.6 355 67.3
Ciclev10032010m.g Citrus clementina HOM05D005436 ORTHO05D006215 1.3e-87 327.4 342 68.1
Sabra10G0023000 Salix brachista HOM05D005436 ORTHO05D006215 3.8e-87 325.9 345 67.5
Gorai.002G187200 Gossypium raimondii HOM05D005436 ORTHO05D006215 1.1e-86 324.3 345 68.1
Lj3A1057T77 Lonicera japonica HOM05D005436 ORTHO05D006215 1.1e-86 324.3 345 68.7
Oeu001711.1 Olea europaea HOM05D005436 ORTHO05D006215 1.1e-86 324.3 352 67.6
Migut.E00197 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.5e-86 323.2 350 67.1
Gohir.D01G151000 Gossypium hirsutum HOM05D005436 ORTHO05D006215 4.2e-86 322.4 345 67.8
Hund25385 Selenicereus undatus HOM05D005436 ORTHO05D006215 9.5e-86 321.2 346 66.5
Gohir.A01G159300 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.8e-85 319.7 345 67.2
CSS0002796 Camellia sinensis var. sinensis HOM05D005436 ORTHO05D006215 4.7e-85 318.9 359 65.2
QL03p058434 Quercus lobata HOM05D005436 ORTHO05D006215 6.1e-85 318.5 344 67.7
Ah.03g133110 Amaranthus hybridus HOM05D005436 ORTHO05D006215 8.0e-85 318.2 352 67.0
Prupe.1G243200 Prunus persica HOM05D005436 ORTHO05D006215 1.8e-84 317.0 343 65.6
AUR62005449 Chenopodium quinoa HOM05D005436 ORTHO05D006215 2.3e-84 316.6 349 67.3
MSTRG.7922 Avicennia marina HOM05D005436 ORTHO05D006215 6.8e-84 315.1 343 66.2
Actinidia27803 Actinidia chinensis HOM05D005436 ORTHO05D006215 2.6e-83 313.2 348 65.8
Nitab4.5_0004301g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 3.4e-83 312.8 346 67.1
MSTRG.2420 Avicennia marina HOM05D005436 ORTHO05D006215 4.4e-83 312.4 349 66.5
PGR119G1276 Punica granatum HOM05D005436 ORTHO05D006215 4.4e-83 312.4 346 67.6
CANSAT01G1386 Cannabis sativa HOM05D005436 ORTHO05D006215 7.5e-83 311.6 352 58.2
EL10Ac6g13796 Beta vulgaris HOM05D005436 ORTHO05D006215 9.8e-83 311.2 345 67.8
PSO832G1925 Papaver somniferum HOM05D005436 ORTHO05D006215 8.3e-82 308.1 368 60.6
CiPaw.05G183100 Carya illinoinensis HOM05D005436 ORTHO05D006215 9.2e-81 304.7 343 66.2
Cpa.g.sc33.9 Carica papaya HOM05D005436 ORTHO05D006215 2.7e-80 303.1 345 63.5
Eucgr.H02509 Eucalyptus grandis HOM05D005436 ORTHO05D006215 4.5e-80 302.4 376 60.6
TWI36G0572 Tripterygium wilfordii HOM05D005436 ORTHO05D006215 1.7e-79 300.4 345 64.9
CsaV3_2G024910 Cucumis sativus L. HOM05D005436 ORTHO05D006215 2.3e-79 300.1 369 62.6
Manes.12G023900 Manihot esculenta HOM05D005436 ORTHO05D006215 3.8e-79 299.3 343 67.1
Glyma.01G026500 Glycine max HOM05D005436 ORTHO05D006215 8.6e-79 298.1 344 60.2
Lalb_Chr16g0381971 Lupinus albus HOM05D005436 ORTHO05D006215 1.1e-78 297.7 343 63.3
Sc14g0008720 Simmondsia chinensis HOM05D005436 ORTHO05D006215 5.6e-78 295.4 353 63.5
MD13G1102600 Malus domestica HOM05D005436 ORTHO05D006215 2.1e-77 293.5 339 65.2
Migut.L01484 Erythranthe guttata HOM05D005436 ORTHO05D006215 2.8e-77 293.1 283 73.5
CDE07G1825 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 4.7e-77 292.4 348 61.5
ClCG08G017720 Citrullus lanatus HOM05D005436 ORTHO05D006215 4.7e-77 292.4 373 61.1
SHI17740 Sapria himalayana HOM05D005436 ORTHO05D006215 6.1e-77 292.0 298 71.8
Nitab4.5_0000069g0320 Nicotiana tabacum HOM05D005436 ORTHO05D006215 8.0e-77 291.6 308 67.9
SGA_v2.0_scaffold87G27081 Striga asiatica HOM05D005436 ORTHO05D006215 1.4e-76 290.8 343 64.1
Sopen05g008220 Solanum pennellii HOM05D005436 ORTHO05D006215 1.8e-76 290.4 344 62.2
PGSC0003DMG400018621 Solanum tuberosum HOM05D005436 ORTHO05D006215 3.0e-76 289.7 347 63.7
unitig_744.g24291 Utricularia gibba HOM05D005436 ORTHO05D006215 2.6e-75 286.6 339 61.4
MELO3C010688.2 Cucumis melo HOM05D005436 ORTHO05D006215 4.4e-75 285.8 396 44.7
VMungo1215G1754 Vigna mungo HOM05D005436 ORTHO05D006215 5.7e-75 285.4 343 59.2
Solyc05g013410.3 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.5e-75 285.0 344 61.9
ECA233G4095 Erigeron canadensis HOM05D005436 ORTHO05D006215 1.3e-74 284.3 292 69.5
Nitab4.5_0000740g0060 Nicotiana tabacum HOM05D005436 ORTHO05D006215 1.7e-74 283.9 344 62.5
Gohir.D05G314200 Gossypium hirsutum HOM05D005436 ORTHO05D006215 2.9e-74 283.1 225 65.8
Lj2g0004338 Lotus japonicus HOM05D005436 ORTHO05D006215 3.7e-74 282.7 342 62.0
Nitab4.5_0002631g0010 Nicotiana tabacum HOM05D005436 ORTHO05D006215 4.9e-74 282.3 332 63.9
Actinidia08140 Actinidia chinensis HOM05D005436 ORTHO05D006215 1.1e-73 281.2 301 69.1
Sopen01g003470 Solanum pennellii HOM05D005436 ORTHO05D006215 1.1e-73 281.2 358 59.5
ATR0686G177 Amborella trichopoda HOM05D005436 ORTHO05D006215 1.8e-73 280.4 346 61.6
Solyc01g007930.4 Solanum lycopersicum HOM05D005436 ORTHO05D006215 7.0e-73 278.5 359 59.3
PGSC0003DMG400016374 Solanum tuberosum HOM05D005436 ORTHO05D006215 1.2e-72 277.7 357 59.9
Glyma.02G038300 Glycine max HOM05D005436 ORTHO05D006215 2.7e-72 276.6 345 54.8
Aqoxy5G03784 Aquilegia oxysepala HOM05D005436 ORTHO05D006215 3.5e-72 276.2 353 60.3
Dinv15239 Davidia involucrata HOM05D005436 ORTHO05D006215 3.5e-72 276.2 239 61.9
arahy.Tifrunner.gnm1.ann1.9TCE4B Arachis hypogaea HOM05D005436 ORTHO05D006215 4.6e-72 275.8 343 61.5
CAN.G282.54 Capsicum annuum HOM05D005436 ORTHO05D006215 1.3e-71 274.2 319 63.3
Haze_12240 Corylus avellana HOM05D005436 ORTHO05D006215 5.0e-71 272.3 225 61.3
DCAR_024434 Daucus carota HOM05D005436 ORTHO05D006215 7.3e-70 268.5 350 58.6
Medtr5g033210 Medicago truncatula HOM05D005436 ORTHO05D006215 7.3e-70 268.5 339 60.2
Nn4g22635 Nelumbo nucifera HOM05D005436 ORTHO05D006215 1.4e-68 264.2 246 56.9
TAR371G0549 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.8e-68 263.8 247 56.3
vmacro01128 Vaccinium macrocarpon HOM05D005436 ORTHO05D006215 4.4e-67 259.2 313 64.9
RcHm_v2.0_Chr4g0432791 Rosa chinensis HOM05D005436 ORTHO05D006215 1.7e-66 257.3 342 59.4
Ca_04576_v3 Cicer arietinum L. HOM05D005436 ORTHO05D006215 6.4e-66 255.4 340 60.0
Lalb_Chr09g0326141 Lupinus albus HOM05D005436 ORTHO05D006215 2.7e-64 250.0 342 57.9
Phvul.002G150600 Phaseolus vulgaris HOM05D005436 ORTHO05D006215 3.5e-64 249.6 343 54.2
Sed0020021 Sechium edule HOM05D005436 ORTHO05D006215 6.0e-64 248.8 291 55.7
FvH4_4g25470 Fragaria vesca HOM05D005436 ORTHO05D006215 7.8e-64 248.4 342 57.6
Potri.008G187200 Populus trichocarpa HOM05D005436 ORTHO05D006215 3.9e-63 246.1 218 58.7
HPP92_021381 Vanilla planifolia HOM05D005436 ORTHO05D006215 3.3e-62 243.0 352 55.4
arahy.Tifrunner.gnm1.ann1.RINP63 Arachis hypogaea HOM05D005436 ORTHO05D006215 1.2e-61 241.1 419 50.4
MBI10_g03014_MAGBIO Magnolia biondii HOM05D005436 ORTHO05D006215 2.1e-61 240.4 361 56.0
FAN17G0814 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.7e-61 239.2 342 56.4
SEGI_41390 Sequoiadendron giganteum HOM05D005436 ORTHO05D006215 4.7e-61 239.2 310 59.7
AUR62024292 Chenopodium quinoa HOM05D005436 ORTHO05D006215 6.8e-60 235.3 250 72.0
FAN12G3651 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.0e-59 233.8 369 38.8
FAN07G0404 Fragaria x ananassa HOM05D005436 ORTHO05D006215 4.9e-58 229.2 342 55.6
unitig_21.g20870 Utricularia gibba HOM05D005436 ORTHO05D006215 5.4e-57 225.7 318 43.1
SalBow2G2235 Salvia bowleyana HOM05D005436 ORTHO05D006215 9.2e-57 224.9 318 57.5
FAN22G0693 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-54 217.2 342 53.8
CAN.G227.3 Capsicum annuum HOM05D005436 ORTHO05D006215 7.1e-49 198.7 184 57.6
Pp3c16_22820 Physcomitrium patens HOM05D005436 ORTHO05D006215 3.0e-47 193.4 337 51.9
Psat2g092560 Pisum sativum HOM05D005436 ORTHO05D006215 4.0e-44 183.0 181 56.9
SMO334G0079 Selaginella moellendorffii HOM05D005436 ORTHO05D006215 9.0e-44 181.8 289 56.4
RcHm_v2.0_Chr7g0240871 Rosa chinensis HOM05D005436 ORTHO05D006215 1.2e-40 171.4 183 54.1
CDE04G1163 Ceratophyllum demersum HOM05D005436 ORTHO05D006215 3.9e-39 166.4 213 43.2
GSVIVG01004082001 Vitis vinifera HOM05D005436 ORTHO05D006215 1.3e-37 161.4 193 74.1
CBR_g41529 Chara braunii HOM05D005436 ORTHO05D006215 3.6e-37 159.8 129 60.5
Peaxi162Scf00128g00005 Petunia axillaris HOM05D005436 ORTHO05D006215 9.0e-36 155.2 241 60.2
Cc11_g15600 Coffea canephora HOM05D005436 ORTHO05D006215 3.4e-35 153.3 193 71.5
AagrBONN_evm.TU.Sc2ySwM_344.5149 Anthoceros agrestis HOM05D005436 ORTHO05D006215 1.3e-31 141.4 278 50.4
FAN18G0478 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.3e-31 140.6 181 46.4
Os04g0476000 Oryza sativa ssp. japonica HOM05D005436 ORTHO05D006215 5.1e-31 139.4 286 50.0
FAN13G0137 Fragaria x ananassa HOM05D005436 ORTHO05D006215 1.9e-30 137.5 180 46.1
FAN08G0615 Fragaria x ananassa HOM05D005436 ORTHO05D006215 2.1e-29 134.0 180 45.6
TPR.G38771 Trifolium pratense HOM05D005436 ORTHO05D006215 1.1e-22 111.7 84 59.5
TAR371G0328 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-22 111.3 154 77.9
FvH4_5g38910 Fragaria vesca HOM05D005436 ORTHO05D006215 3.3e-22 110.2 116 50.9
CAN.G227.4 Capsicum annuum HOM05D005436 ORTHO05D006215 8.2e-21 105.5 173 69.4
TAR314G0004 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.2e-18 97.4 92 51.1
AL3G40260 Arabidopsis lyrata HOM05D005436 ORTHO05D006215 1.4e-17 94.7 56 82.1
RcHm_v2.0_Chr4g0436601 Rosa chinensis HOM05D005436 ORTHO05D006215 1.4e-17 94.7 84 56.0
TAR633G1814 Trochodendron aralioides HOM05D005436 ORTHO05D006215 9.3e-17 92.0 128 81.2
TPR.G38818 Trifolium pratense HOM05D005436 ORTHO05D006215 4.3e-14 83.2 63 63.5
TAR371G0429 Trochodendron aralioides HOM05D044080 ORTHO05D006215 4.3e-14 83.2 134 59.0
TAR633G0170 Trochodendron aralioides HOM05D005436 ORTHO05D006215 1.5e-11 74.7 121 81.0
RcHm_v2.0_Chr1g0318701 Rosa chinensis HOM05D005436 ORTHO05D006215 2.1e-08 64.3 56 57.1
TAR314G0002 Trochodendron aralioides HOM05D005436 ORTHO05D006215 2.7e-08 63.9 41 65.9
RcHm_v2.0_Chr2g0120671 Rosa chinensis HOM05D009478 ORTHO05D010213 7.4e-06 55.8 41 56.1


User provided reference genes

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