Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 0.0e+00 1176.8 597 100.0
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 0.0e+00 1096.6 598 94.3
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 0.0e+00 1087.8 599 93.5
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 0.0e+00 1086.2 597 93.1
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 0.0e+00 1082.0 597 93.5
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 0.0e+00 1080.9 602 92.7
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 0.0e+00 1076.6 602 92.4
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 1.8e-310 1068.5 601 92.0
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 1.8e-310 1068.5 601 92.0
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 4.0e-310 1067.4 597 91.5
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 3.8e-308 1060.8 597 91.0
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.3e-303 1045.8 588 91.8
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 6.5e-292 1006.9 601 86.4
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 3.9e-289 997.7 597 85.3
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.5e-267 926.0 598 78.3
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.4e-265 919.5 598 77.8
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 1.1e-262 909.8 597 76.9
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.8e-262 909.1 597 77.2
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 1.8e-262 909.1 595 76.3
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 2.7e-261 905.2 597 76.4
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 5.9e-261 904.0 585 77.8
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 5.9e-261 904.0 597 75.9
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 8.5e-260 900.2 599 76.0
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.6e-258 896.0 598 75.6
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.6e-258 896.0 581 78.0
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 4.7e-258 894.4 597 75.2
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.4e-257 892.9 598 74.9
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 8.8e-257 890.2 556 78.6
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 2.0e-256 889.0 596 74.5
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 2.8e-255 885.2 546 78.9
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 6.3e-255 884.0 540 80.0
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 1.1e-254 883.2 597 74.0
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.4e-254 882.9 596 74.8
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 3.1e-254 881.7 565 77.2
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 7.0e-254 880.6 597 75.0
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 9.5e-251 870.2 597 74.0
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.6e-250 869.4 597 74.0
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.6e-250 869.4 604 72.7
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 2.1e-250 869.0 598 73.6
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 4.7e-250 867.8 600 73.3
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.8e-249 865.9 537 80.3
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 2.3e-249 865.5 554 77.4
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 6.8e-249 864.0 586 73.9
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 9.8e-248 860.1 574 74.7
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.3e-247 859.8 543 77.3
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 1.3e-247 859.8 604 71.4
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 4.9e-247 857.8 598 71.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 6.3e-247 857.4 597 72.2
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 4.1e-246 854.7 543 77.9
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 4.1e-246 854.7 599 72.8
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 4.1e-246 854.7 550 75.8
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 1.2e-245 853.2 604 72.7
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 2.7e-245 852.0 553 76.5
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 2.7e-245 852.0 598 72.4
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 7.8e-245 850.5 597 71.2
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 1.1e-243 846.7 598 71.7
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 1.1e-243 846.7 538 76.8
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-243 846.3 543 77.3
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 5.6e-243 844.3 597 70.7
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 5.6e-243 844.3 579 72.5
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.6e-242 842.8 543 77.3
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 2.8e-242 842.0 538 76.2
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 4.7e-242 841.3 539 77.7
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 2.3e-241 839.0 538 76.0
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 3.0e-241 838.6 578 72.0
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 5.2e-241 837.8 596 70.1
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 2.0e-240 835.9 638 68.3
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 5.7e-240 834.3 557 74.5
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.2e-239 832.4 574 73.0
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 4.1e-238 828.2 532 75.8
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 4.1e-238 828.2 497 84.7
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 5.4e-238 827.8 539 76.1
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 5.4e-238 827.8 564 71.6
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 1.6e-237 826.2 568 72.2
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.0e-237 825.9 539 76.1
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 2.5e-235 818.9 595 68.9
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.3e-235 818.5 598 68.7
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.6e-234 816.2 538 74.2
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.0e-232 809.3 527 77.8
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 1.1e-230 803.5 595 68.9
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.2e-229 800.0 576 71.5
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 8.9e-225 783.9 536 72.2
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 8.9e-225 783.9 522 73.8
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 3.4e-224 781.9 538 71.7
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 7.5e-224 780.8 524 76.3
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 1.7e-223 779.6 597 68.3
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.1e-222 776.9 542 71.0
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 7.1e-222 774.2 559 70.5
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 1.6e-221 773.1 537 72.8
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.6e-221 773.1 551 70.2
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 5.2e-217 758.1 594 66.7
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 7.6e-216 754.2 470 79.4
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 3.2e-214 748.8 527 72.1
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 5.4e-214 748.0 524 71.6
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.6e-213 746.5 538 69.3
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 2.7e-213 745.7 525 71.2
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 3.9e-212 741.9 461 76.4
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 3.3e-203 712.2 442 77.6
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 7.3e-203 711.1 597 64.5
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.6e-203 710.7 494 72.3
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 5.3e-201 704.9 495 72.5
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 9.0e-201 704.1 527 67.6
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 5.1e-196 688.3 510 67.5
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 7.1e-190 667.9 551 62.8
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 6.0e-189 664.8 504 66.1
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 1.1e-185 654.1 588 59.9
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 1.6e-178 630.2 382 78.3
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.1e-177 625.9 554 60.6
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 3.0e-164 582.8 446 65.5
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 3.8e-159 565.8 392 72.4
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.9e-121 440.7 346 62.1
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 4.4e-91 339.7 253 68.4
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 8.4e-90 335.5 200 81.0
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-66 258.5 274 51.5
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-56 224.2 208 53.4
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 8.2e-53 212.6 154 69.5
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.3e-47 194.5 143 67.1
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 5.7e-46 189.9 102 95.1
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.3e-37 162.2 100 75.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.2e-33 147.1 101 67.3
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.5e-25 122.1 107 65.4
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 3.2e-25 120.9 78 75.6
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 3.0e-23 114.4 66 77.3
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 5.2e-23 113.6 174 42.0
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 8.3e-21 106.3 76 68.4
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 1.1e-20 105.9 65 81.5
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 1.1e-20 105.9 65 81.5
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 7.0e-20 103.2 68 77.9
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 7.0e-20 103.2 68 77.9
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 2.5e-17 94.7 123 48.0
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.6e-16 92.0 68 67.6
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 3.6e-16 90.9 54 79.6
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 7.5e-06 56.6 123 39.0


User provided reference genes

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