Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25470 Schrenkiella parvula HOM05D007293 ORTHO05D009143 3.2e-45 184.9 106 100.0
Thhalv10019350m.g Eutrema salsugineum HOM05D007293 ORTHO05D009143 3.3e-37 158.3 106 85.8
BcaB03g15542 Brassica carinata HOM05D007293 ORTHO05D009143 4.3e-37 157.9 107 86.9
BcaB05g24561 Brassica carinata HOM05D007293 ORTHO05D009143 4.3e-37 157.9 107 87.9
CARHR063530 Cardamine hirsuta HOM05D007293 ORTHO05D009143 7.3e-37 157.1 106 83.0
BcaC03g15179 Brassica carinata HOM05D007293 ORTHO05D009143 4.7e-36 154.5 107 85.0
AT1G70350 Arabidopsis thaliana HOM05D007293 ORTHO05D009143 6.1e-36 154.1 106 81.1
AL2G29660 Arabidopsis lyrata HOM05D007293 ORTHO05D009143 1.0e-35 153.3 106 79.2
Carub.0002s1704 Capsella rubella HOM05D007293 ORTHO05D009143 1.0e-35 153.3 106 80.2
BcaC08g45820 Brassica carinata HOM05D007293 ORTHO05D009143 1.8e-35 152.5 106 85.8
A02p16490 Brassica napus HOM05D007293 ORTHO05D009143 2.0e-34 149.1 106 82.1
BraA02t06707Z Brassica rapa HOM05D007293 ORTHO05D009143 2.0e-34 149.1 106 82.1
C02p27590 Brassica napus HOM05D007293 ORTHO05D009143 2.6e-34 148.7 106 83.0
BolC2t08814H Brassica oleracea HOM05D007293 ORTHO05D009143 9.8e-34 146.7 106 82.1
BolC6t38732H Brassica oleracea HOM05D007293 ORTHO05D009143 1.1e-32 143.3 104 82.7
C06p36130 Brassica napus HOM05D007293 ORTHO05D009143 3.5e-31 138.3 104 81.7
A07p31100 Brassica napus HOM05D007293 ORTHO05D009143 7.8e-31 137.1 101 84.2
BraA07t30744Z Brassica rapa HOM05D007293 ORTHO05D009143 7.8e-31 137.1 101 84.2
BcaB07g33183 Brassica carinata HOM05D027076 ORTHO05D027107 6.8e-27 124.0 82 85.4
THA.LOC104822141 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 4.1e-24 114.8 106 66.0
THA.LOC104808972 Tarenaya hassleriana HOM05D007293 ORTHO05D009143 9.2e-24 113.6 106 64.2
PGR119G0124 Punica granatum HOM05D007293 ORTHO05D009143 5.2e-19 97.8 106 57.5
RcHm_v2.0_Chr4g0443841 Rosa chinensis HOM05D007293 ORTHO05D009143 3.7e-17 91.7 106 55.7
Atru.chr11.2025 Acer truncatum HOM05D007293 ORTHO05D009143 4.9e-17 91.3 107 55.1
Ciclev10033010m.g Citrus clementina HOM05D007293 ORTHO05D009143 4.9e-17 91.3 107 54.2
RcHm_v2.0_Chr4g0443851 Rosa chinensis HOM05D007293 ORTHO05D009143 4.9e-17 91.3 106 55.7
Duzib268G1575 Durio zibethinus HOM05D007293 ORTHO05D009143 1.9e-16 89.4 106 53.8
FAN12G1260 Fragaria x ananassa HOM05D007293 ORTHO05D009143 3.2e-16 88.6 108 54.6
FAN17G1887 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 53.8
FAN22G1529 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-16 87.8 106 53.8
Gohir.A03G139900 Gossypium hirsutum HOM05D007293 ORTHO05D009143 9.2e-16 87.0 106 54.7
Gohir.D02G162700 Gossypium hirsutum HOM05D007293 ORTHO05D009143 9.2e-16 87.0 106 54.7
Thecc.02G249100 Theobroma cacao HOM05D007293 ORTHO05D009143 9.2e-16 87.0 106 53.8
FvH4_4g34460 Fragaria vesca HOM05D007293 ORTHO05D009143 2.1e-15 85.9 106 54.7
Gorai.005G182700 Gossypium raimondii HOM05D007293 ORTHO05D009143 2.1e-15 85.9 106 53.8
TWI75G0451 Tripterygium wilfordii HOM05D007293 ORTHO05D009143 4.6e-15 84.7 108 52.8
Manes.13G030700 Manihot esculenta HOM05D007293 ORTHO05D009143 1.7e-14 82.8 114 50.0
ClCG08G018060 Citrullus lanatus HOM05D007293 ORTHO05D009143 3.0e-14 82.0 110 56.4
Glyma.02G034600 Glycine max HOM05D007293 ORTHO05D009143 3.0e-14 82.0 107 53.3
MD16G1092500 Malus domestica HOM05D007293 ORTHO05D009143 3.9e-14 81.6 106 50.9
Prupe.1G253900 Prunus persica HOM05D007293 ORTHO05D009143 5.1e-14 81.3 108 52.8
MD13G1091900 Malus domestica HOM05D007293 ORTHO05D009143 6.6e-14 80.9 106 50.0
Dinv33495 Davidia involucrata HOM05D007293 ORTHO05D009143 2.5e-13 79.0 111 51.4
Duzib251G0045 Durio zibethinus HOM05D007293 ORTHO05D009143 2.5e-13 79.0 102 51.0
Psat0s2875g0160 Pisum sativum HOM05D007293 ORTHO05D009143 2.5e-13 79.0 107 50.5
TPR.G13591 Trifolium pratense HOM05D007293 ORTHO05D009143 3.3e-13 78.6 107 51.4
Aa31LG4G10590 Aethionema arabicum HOM05D007293 ORTHO05D009143 5.6e-13 77.8 64 71.9
COL.COLO4_36768 Corchorus olitorius HOM05D007293 ORTHO05D009143 5.6e-13 77.8 100 54.0
Eucgr.H02610 Eucalyptus grandis HOM05D007293 ORTHO05D009143 9.5e-13 77.0 114 50.9
Psat2g106240 Pisum sativum HOM05D007293 ORTHO05D009143 1.2e-12 76.6 107 48.6
EL10Ac6g13673 Beta vulgaris HOM05D007293 ORTHO05D009143 1.6e-12 76.3 84 63.1
CANSAT01G1482 Cannabis sativa HOM05D007293 ORTHO05D009143 3.6e-12 75.1 106 50.0
Cfa009144 Carpinus fangiana HOM05D007293 ORTHO05D009143 3.6e-12 75.1 108 50.0
Lj2g0011400 Lotus japonicus HOM05D007293 ORTHO05D009143 1.4e-11 73.2 111 50.5
Phvul.002G071600 Phaseolus vulgaris HOM05D007293 ORTHO05D009143 1.8e-11 72.8 107 49.5
CSS0045153 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 2.3e-11 72.4 106 48.1
GSVIVG01032483001 Vitis vinifera HOM05D007293 ORTHO05D009143 2.3e-11 72.4 112 50.9
Dinv35058 Davidia involucrata HOM05D007293 ORTHO05D009143 5.2e-11 71.2 112 45.5
CiPaw.05G150900 Carya illinoinensis HOM05D007293 ORTHO05D009143 6.8e-11 70.9 107 46.7
Migut.H00123 Erythranthe guttata HOM05D007293 ORTHO05D009143 6.8e-11 70.9 112 52.7
Prupe.5G015600 Prunus persica HOM05D007293 ORTHO05D009143 8.9e-11 70.5 101 49.5
Lalb_Chr09g0326381 Lupinus albus HOM05D007293 ORTHO05D009143 1.5e-10 69.7 107 47.7
Sc04g0009130 Simmondsia chinensis HOM05D007293 ORTHO05D009143 2.0e-10 69.3 70 58.6
Hund05995 Selenicereus undatus HOM05D007293 ORTHO05D009143 2.6e-10 68.9 105 47.6
CSS0040497 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 3.4e-10 68.6 106 46.2
AUR62014041 Chenopodium quinoa HOM05D007293 ORTHO05D009143 3.4e-10 68.6 99 52.5
Ca_13998_v3 Cicer arietinum L. HOM05D007293 ORTHO05D009143 9.9e-10 67.0 104 47.1
Migut.K01369 Erythranthe guttata HOM05D007293 ORTHO05D009143 2.9e-09 65.5 110 50.9
Medtr5g034340 Medicago truncatula HOM05D007293 ORTHO05D009143 3.8e-09 65.1 101 44.6
AUR62005378 Chenopodium quinoa HOM05D007293 ORTHO05D009143 4.9e-09 64.7 94 50.0
TAR622G0242 Trochodendron aralioides HOM05D007293 ORTHO05D009143 6.4e-09 64.3 106 46.2
Rhsim10G0022800 Rhododendron simsii HOM05D007293 ORTHO05D009143 1.1e-08 63.5 104 47.1
QL03p061237 Quercus lobata HOM05D007293 ORTHO05D009143 1.4e-08 63.2 109 45.9
Os01g0738000 Oryza sativa ssp. japonica HOM05D007293 ORTHO05D009143 2.4e-08 62.4 107 47.7
vmacro05819 Vaccinium macrocarpon HOM05D007293 ORTHO05D009143 2.4e-08 62.4 106 45.3
Zm00001eb153880 Zea mays HOM05D007293 ORTHO05D009143 2.4e-08 62.4 111 46.8
TPR.G13583 Trifolium pratense HOM05D007293 ORTHO05D009143 3.2e-08 62.0 110 44.5
DCAR_011205 Daucus carota HOM05D007293 ORTHO05D009143 4.1e-08 61.6 109 49.5
Nn3g16892 Nelumbo nucifera HOM05D007293 ORTHO05D009143 4.1e-08 61.6 47 72.3
VMungo1215G2593 Vigna mungo HOM05D007293 ORTHO05D009143 4.1e-08 61.6 102 46.1
Actinidia06026 Actinidia chinensis HOM05D007293 ORTHO05D009143 5.4e-08 61.2 50 68.0
FAN07G2443 Fragaria x ananassa HOM05D007293 ORTHO05D009143 5.4e-08 61.2 91 49.5
Lj7A591G78 Lonicera japonica HOM05D007293 ORTHO05D009143 5.4e-08 61.2 110 47.3
Oeu062917.1 Olea europaea HOM05D007293 ORTHO05D009143 5.4e-08 61.2 103 48.5
Haze_12178 Corylus avellana HOM05D007293 ORTHO05D009143 7.1e-08 60.8 106 43.4
CsaV3_4G037870 Cucumis sativus L. HOM05D001719 ORTHO05D008883 9.2e-08 60.5 103 46.6
CSS0015603 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.2e-07 60.1 105 43.8
CDE06G2495 Ceratophyllum demersum HOM05D007293 ORTHO05D009143 2.1e-07 59.3 48 66.7
HPP92_019952 Vanilla planifolia HOM05D007293 ORTHO05D009143 2.7e-07 58.9 74 59.5
MSTRG.24016 Avicennia marina HOM05D007293 ORTHO05D009143 3.5e-07 58.5 109 49.5
Hma1.2p1_0802F.1_g220360 Hydrangea macrophylla HOM05D007293 ORTHO05D009143 3.5e-07 58.5 105 44.8
Cc07_g02290 Coffea canephora HOM05D007293 ORTHO05D009143 6.0e-07 57.8 102 49.0
arahy.Tifrunner.gnm1.ann1.F37JRW Arachis hypogaea HOM05D007293 ORTHO05D009143 7.8e-07 57.4 104 47.1
Aqoxy3G02974 Aquilegia oxysepala HOM05D007293 ORTHO05D009143 1.7e-06 56.2 111 48.6
CSS0001505 Camellia sinensis var. sinensis HOM05D007293 ORTHO05D009143 1.7e-06 56.2 106 42.5
Lsat_1_v5_gn_4_182280 Lactuca sativa HOM05D007293 ORTHO05D009143 2.3e-06 55.8 109 46.8
TWI32G0642 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.1e-06 54.7 57 54.4
TWI63G0394 Tripterygium wilfordii HOM05D007491 ORTHO05D009489 5.1e-06 54.7 61 50.8
arahy.Tifrunner.gnm1.ann1.HDCN36 Arachis hypogaea HOM05D007293 ORTHO05D009143 8.6e-06 53.9 107 43.9
Gohir.D06G094200 Gossypium hirsutum HOM05D007491 ORTHO05D009489 8.6e-06 53.9 77 44.2
Gorai.010G108700 Gossypium raimondii HOM05D007491 ORTHO05D009489 8.6e-06 53.9 77 44.2


User provided reference genes

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