Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g25090 Schrenkiella parvula HOM05D007009 ORTHO05D008451 1.5e-107 392.9 205 100.0
Thhalv10019139m.g Eutrema salsugineum HOM05D007009 ORTHO05D008451 2.6e-91 339.0 205 87.8
BolC6t39457H Brassica oleracea HOM05D007009 ORTHO05D008451 1.1e-78 297.0 214 75.7
Carub.0002s1666 Capsella rubella HOM05D007009 ORTHO05D008451 1.1e-76 290.4 208 76.9
Aa31LG4G10880 Aethionema arabicum HOM05D007009 ORTHO05D008451 3.8e-74 282.0 204 73.0
BcaC08g46448 Brassica carinata HOM05D007009 ORTHO05D008451 1.4e-73 280.0 214 72.0
AT1G69980 Arabidopsis thaliana HOM05D007009 ORTHO05D008451 1.8e-71 273.1 208 73.1
C06p43850 Brassica napus HOM05D007009 ORTHO05D008451 8.7e-71 270.8 180 80.6
AL2G29220 Arabidopsis lyrata HOM05D007009 ORTHO05D008451 1.1e-70 270.4 207 72.0
CARHR063080 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.2e-67 260.4 205 70.7
BcaB03g14776 Brassica carinata HOM05D007009 ORTHO05D008451 1.0e-63 247.3 190 74.2
THA.LOC104808792 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 5.9e-59 231.5 197 66.0
BcaB03g14779 Brassica carinata HOM05D007009 ORTHO05D008451 1.5e-51 206.8 201 64.2
A07p36430 Brassica napus HOM05D007009 ORTHO05D008451 5.9e-51 204.9 210 58.6
TWI18G0515 Tripterygium wilfordii HOM05D007009 ORTHO05D008451 3.9e-47 192.2 203 54.2
CsaV3_5G032050 Cucumis sativus L. HOM05D007009 ORTHO05D008451 6.7e-47 191.4 208 53.8
Ciclev10032750m.g Citrus clementina HOM05D007009 ORTHO05D008451 3.3e-46 189.1 212 52.4
AUR62026539 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.8e-44 183.3 200 52.0
Atru.chr11.1917 Acer truncatum HOM05D007009 ORTHO05D008451 4.1e-44 182.2 219 51.1
Aqoxy3G03177 Aquilegia oxysepala HOM05D007009 ORTHO05D008451 5.3e-44 181.8 188 54.8
COL.COLO4_36263 Corchorus olitorius HOM05D007009 ORTHO05D008451 3.4e-43 179.1 214 50.5
Medtr5g037120 Medicago truncatula HOM05D007009 ORTHO05D008451 3.4e-43 179.1 214 50.0
ClCG05G024860 Citrullus lanatus HOM05D007009 ORTHO05D008451 1.0e-42 177.6 209 49.8
Sopen05g002530 Solanum pennellii HOM05D007009 ORTHO05D008451 1.3e-42 177.2 219 47.5
Nitab4.5_0008607g0010 Nicotiana tabacum HOM05D007009 ORTHO05D008451 2.9e-42 176.0 211 47.4
Prupe.1G262900 Prunus persica HOM05D007009 ORTHO05D008451 2.9e-42 176.0 209 51.2
Dinv31143 Davidia involucrata HOM05D007009 ORTHO05D008451 5.0e-42 175.3 228 49.6
PGSC0003DMG401022631 Solanum tuberosum HOM05D007009 ORTHO05D008451 1.1e-41 174.1 216 47.7
Manes.01G193800 Manihot esculenta HOM05D007009 ORTHO05D008451 1.9e-41 173.3 207 50.7
CAN.G27.64 Capsicum annuum HOM05D007009 ORTHO05D008451 5.5e-41 171.8 217 47.5
Cfa009076 Carpinus fangiana HOM05D007009 ORTHO05D008451 7.2e-41 171.4 217 46.5
Cc11_g13910 Coffea canephora HOM05D007009 ORTHO05D008451 7.2e-41 171.4 213 48.8
Nitab4.5_0001030g0090 Nicotiana tabacum HOM05D007009 ORTHO05D008451 9.4e-41 171.0 211 47.4
Hma1.2p1_0265F.1_g106360 Hydrangea macrophylla HOM05D007009 ORTHO05D008451 1.2e-40 170.6 211 47.4
Peaxi162Scf00828g00312 Petunia axillaris HOM05D007009 ORTHO05D008451 1.2e-40 170.6 195 50.3
arahy.Tifrunner.gnm1.ann1.8B6YVA Arachis hypogaea HOM05D007009 ORTHO05D008451 1.6e-40 170.2 214 49.5
Nn4g22971 Nelumbo nucifera HOM05D007009 ORTHO05D008451 1.6e-40 170.2 207 50.2
Sed0027578 Sechium edule HOM05D007009 ORTHO05D008451 1.6e-40 170.2 212 49.1
Gohir.A05G320100 Gossypium hirsutum HOM05D007009 ORTHO05D008451 3.6e-40 169.1 203 48.8
arahy.Tifrunner.gnm1.ann1.IMS4B0 Arachis hypogaea HOM05D007009 ORTHO05D008451 4.7e-40 168.7 223 48.9
Gohir.D05G322400 Gossypium hirsutum HOM05D007009 ORTHO05D008451 4.7e-40 168.7 203 48.3
TPR.G26720 Trifolium pratense HOM05D007009 ORTHO05D008451 7.9e-40 167.9 215 49.3
Gorai.009G346000 Gossypium raimondii HOM05D007009 ORTHO05D008451 1.0e-39 167.5 203 48.3
PSO591G0441 Papaver somniferum HOM05D007009 ORTHO05D008451 1.4e-39 167.2 210 49.0
Solyc05g006580.3 Solanum lycopersicum HOM05D007009 ORTHO05D008451 1.4e-39 167.2 219 46.6
FvH4_4g35380 Fragaria vesca HOM05D007009 ORTHO05D008451 1.8e-39 166.8 210 47.6
FAN12G0678 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.8e-39 166.8 210 47.6
Ah.03g132140 Amaranthus hybridus HOM05D007009 ORTHO05D008451 3.9e-39 165.6 215 48.4
CANSAT01G1662 Cannabis sativa HOM05D007009 ORTHO05D008451 3.9e-39 165.6 215 46.5
PSO832G0198 Papaver somniferum HOM05D007009 ORTHO05D008451 5.2e-39 165.2 185 51.9
CSS0013437 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 2.0e-38 163.3 218 46.3
Glyma.01G038700 Glycine max HOM05D007009 ORTHO05D008451 2.0e-38 163.3 219 47.0
QL03p067658 Quercus lobata HOM05D007009 ORTHO05D008451 2.0e-38 163.3 218 45.4
Actinidia08196 Actinidia chinensis HOM05D007009 ORTHO05D008451 2.6e-38 162.9 213 48.4
Glyma.02G026000 Glycine max HOM05D007009 ORTHO05D008451 2.6e-38 162.9 213 46.5
Duzib251G0800 Durio zibethinus HOM05D007009 ORTHO05D008451 7.4e-38 161.4 203 49.3
Hund25306 Selenicereus undatus HOM05D007009 ORTHO05D008451 7.4e-38 161.4 192 48.4
Thecc.02G237500 Theobroma cacao HOM05D007009 ORTHO05D008451 9.7e-38 161.0 205 48.3
Potri.010G039466 Populus trichocarpa HOM05D007009 ORTHO05D008451 1.3e-37 160.6 191 48.7
FAN17G0686 Fragaria x ananassa HOM05D007009 ORTHO05D008451 1.7e-37 160.2 185 50.3
Lalb_Chr05g0217381 Lupinus albus HOM05D007009 ORTHO05D008451 2.2e-37 159.8 214 46.7
Dinv24931 Davidia involucrata HOM05D000094 ORTHO05D002904 2.8e-37 159.5 179 50.3
TAR374G0768 Trochodendron aralioides HOM05D007009 ORTHO05D008451 2.8e-37 159.5 177 52.0
FAN22G1672 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.7e-37 159.1 183 50.3
GSVIVG01020129001 Vitis vinifera HOM05D007009 ORTHO05D008451 3.7e-37 159.1 200 48.0
Lj2g0006218 Lotus japonicus HOM05D007009 ORTHO05D008451 8.2e-37 157.9 219 47.0
Eucgr.B03385 Eucalyptus grandis HOM05D007009 ORTHO05D008451 1.8e-36 156.8 211 48.3
CiPaw.06G077800 Carya illinoinensis HOM05D007009 ORTHO05D008451 2.4e-36 156.4 216 44.9
Sc11g0001470 Simmondsia chinensis HOM05D007009 ORTHO05D008451 2.4e-36 156.4 167 52.7
FAN07G0981 Fragaria x ananassa HOM05D007009 ORTHO05D008451 3.1e-36 156.0 210 46.2
Potri.008G191700 Populus trichocarpa HOM05D007009 ORTHO05D008451 5.3e-36 155.2 204 49.0
Migut.L01370 Erythranthe guttata HOM05D007009 ORTHO05D008451 4.5e-35 152.1 173 48.0
RcHm_v2.0_Chr4g0444991 Rosa chinensis HOM05D007009 ORTHO05D008451 7.7e-35 151.4 183 48.6
MELO3C012041.2 Cucumis melo HOM05D007009 ORTHO05D008451 2.9e-34 149.4 169 52.7
CiPaw.05G143700 Carya illinoinensis HOM05D007009 ORTHO05D008451 1.9e-33 146.7 182 45.6
PGR102G0074 Punica granatum HOM05D007009 ORTHO05D008451 7.2e-33 144.8 212 45.3
BolC8t48483H Brassica oleracea HOM05D007009 ORTHO05D008451 1.4e-31 140.6 116 62.9
MD16G1083100 Malus domestica HOM05D007009 ORTHO05D008451 1.4e-31 140.6 210 45.2
SalBow2G0075 Salvia bowleyana HOM05D007009 ORTHO05D008451 5.2e-31 138.7 213 42.7
Psat2g116400 Pisum sativum HOM05D007009 ORTHO05D008451 5.7e-30 135.2 175 48.0
Sabra10G0027300 Salix brachista HOM05D007009 ORTHO05D008451 1.3e-29 134.0 180 46.7
EL10Ac6g13085 Beta vulgaris HOM05D007009 ORTHO05D008451 2.4e-28 129.8 168 48.2
Os09g0560400 Oryza sativa ssp. japonica HOM05D007009 ORTHO05D008451 2.4e-28 129.8 156 50.0
DCAR_026574 Daucus carota HOM05D007009 ORTHO05D008451 3.1e-28 129.4 166 45.8
VMungo1215G0662 Vigna mungo HOM05D007009 ORTHO05D008451 4.1e-28 129.0 170 45.9
Duzib268G1291 Durio zibethinus HOM05D007009 ORTHO05D008451 5.3e-28 128.6 162 46.3
MSTRG.7846 Avicennia marina HOM05D007009 ORTHO05D008451 7.0e-28 128.3 179 43.6
Ca_15204_v3 Cicer arietinum L. HOM05D007009 ORTHO05D008451 7.0e-28 128.3 142 50.7
Lj6A798T55 Lonicera japonica HOM05D007009 ORTHO05D008451 2.7e-27 126.3 139 47.5
Rhsim12G0053000 Rhododendron simsii HOM05D007009 ORTHO05D008451 7.7e-27 124.8 181 43.1
Cpa.g.sc5.312 Carica papaya HOM05D007009 ORTHO05D008451 2.9e-26 122.9 143 49.7
BraA03t15512Z Brassica rapa HOM05D007009 ORTHO05D031827 2.5e-25 119.8 137 54.7
C03p84900 Brassica napus HOM05D000455 ORTHO05D008451 5.5e-25 118.6 80 78.8
BolC3t20782H Brassica oleracea HOM05D000455 ORTHO05D008451 5.5e-25 118.6 80 78.8
Haze_12109 Corylus avellana HOM05D007009 ORTHO05D008451 5.5e-25 118.6 209 39.7
AUR62039445 Chenopodium quinoa HOM05D007009 ORTHO05D008451 1.6e-24 117.1 133 50.4
Phvul.002G078700 Phaseolus vulgaris HOM05D007009 ORTHO05D008451 8.0e-24 114.8 217 39.2
vmacro01210 Vaccinium macrocarpon HOM05D007009 ORTHO05D008451 8.0e-24 114.8 297 31.3
unitig_8.g2944 Utricularia gibba HOM05D007009 ORTHO05D008451 1.0e-23 114.4 140 45.0
Zm00001eb104690 Zea mays HOM05D007009 ORTHO05D008451 1.0e-23 114.4 161 43.5
HanXRQChr08g0209091 Helianthus annuus HOM05D007009 ORTHO05D008451 1.4e-23 114.0 166 44.0
SGA_v2.0_scaffold166G38305 Striga asiatica HOM05D007009 ORTHO05D008451 8.8e-23 111.3 168 44.6
Lsat_1_v5_gn_8_161781 Lactuca sativa HOM05D007009 ORTHO05D008451 2.8e-21 106.3 173 41.0
ECA233G5592 Erigeron canadensis HOM05D007009 ORTHO05D008451 3.7e-21 105.9 158 38.6
BcaC07g38074 Brassica carinata HOM05D020738 ORTHO05D008451 1.1e-17 94.4 116 50.0
Mapoly0049s0134 Marchantia polymorpha HOM05D007009 ORTHO05D008451 2.5e-17 93.2 147 36.7
BcaB01g02975 Brassica carinata HOM05D020738 ORTHO05D008451 1.8e-15 87.0 80 65.0
BcaB02g10960 Brassica carinata HOM05D000397 ORTHO05D000492 2.6e-14 83.2 79 67.1
CDE10G1217 Ceratophyllum demersum HOM05D007009 ORTHO05D008451 7.5e-14 81.6 154 39.6
BcaB08g34581 Brassica carinata HOM05D020738 ORTHO05D008451 1.7e-13 80.5 131 45.8
THA.LOC104822186 Tarenaya hassleriana HOM05D007009 ORTHO05D008451 2.8e-13 79.7 207 35.3
BolC9t54178H Brassica oleracea HOM05D020738 ORTHO05D031827 1.2e-11 74.3 129 41.1
CSS0007469 Camellia sinensis var. sinensis HOM05D007009 ORTHO05D008451 7.8e-11 71.6 79 46.8
CARHR292590 Cardamine hirsuta HOM05D007009 ORTHO05D008451 1.7e-10 70.5 67 65.7
Pp3c4_16120 Physcomitrium patens HOM05D007009 ORTHO05D008451 3.8e-10 69.3 164 31.1
BcaC04g23032 Brassica carinata HOM05D020738 ORTHO05D031827 5.0e-10 68.9 126 38.9
MBI15_g31419_MAGBIO Magnolia biondii HOM05D007009 ORTHO05D008451 8.6e-10 68.2 109 42.2


User provided reference genes

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