Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.0e-82 309.3 183 100.0
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 4.3e-69 265.0 183 81.4
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 4.3e-69 265.0 183 81.4
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.5e-69 263.8 183 82.5
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 2.1e-68 262.7 183 82.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 1.8e-67 259.6 184 82.1
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 2.0e-66 256.1 183 77.0
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 7.8e-63 244.2 183 78.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 7.8e-63 244.2 183 78.1
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-61 240.4 183 78.7
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 1.5e-61 240.0 183 74.3
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 5.6e-61 238.0 183 79.2
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 5.6e-61 238.0 183 79.2
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 1.4e-59 233.4 183 77.0
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-59 232.3 184 71.2
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-59 232.3 184 71.2
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 5.2e-59 231.5 184 71.2
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 5.2e-59 231.5 184 69.0
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 5.2e-59 231.5 184 71.2
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 2.4e-56 222.6 183 73.8
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-48 197.2 163 74.8
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 3.5e-47 192.2 187 69.5
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.4e-40 169.5 185 56.8
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 2.4e-40 169.5 124 87.1
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.6e-39 166.8 192 53.6
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 4.6e-39 165.2 188 55.9
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 4.6e-39 165.2 188 55.9
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 4.6e-39 165.2 188 55.9
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.0e-38 164.1 184 64.1
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-37 160.6 184 53.3
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 1.1e-37 160.6 184 53.3
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 4.3e-37 158.7 188 54.3
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.8e-36 155.2 150 68.0
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 6.9e-35 151.4 134 68.7
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 6.4e-33 144.8 78 87.2
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.2e-32 142.1 206 51.0
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 1.2e-31 140.6 183 45.9
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 1.2e-31 140.6 183 45.9
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 6.0e-31 138.3 185 46.5
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 6.0e-31 138.3 185 46.5
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 2.3e-30 136.3 184 56.0
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 6.7e-30 134.8 82 86.6
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 4.8e-28 128.6 184 52.7
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 4.9e-25 118.6 183 46.4
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 5.5e-24 115.2 184 42.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.2e-23 114.0 74 77.0
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 4.6e-23 112.1 183 55.2
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 1.3e-20 104.0 202 48.5
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 3.7e-20 102.4 145 48.3
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 8.2e-20 101.3 202 50.5
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.4e-19 99.8 195 48.2
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.3e-19 98.6 205 50.7
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 9.0e-19 97.8 193 48.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 9.0e-19 97.8 189 42.9
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 1.2e-18 97.4 187 41.7
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 1.2e-18 97.4 195 48.7
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 2.0e-18 96.7 193 48.2
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.6e-18 96.3 201 51.2
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 2.6e-18 96.3 137 46.0
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 2.6e-18 96.3 195 44.6
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 3.4e-18 95.9 177 48.6
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 5.8e-18 95.1 198 41.9
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.8e-18 95.1 188 42.0
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 7.6e-18 94.7 204 47.1
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 1.0e-17 94.4 199 42.2
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.2e-17 93.2 195 50.3
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.9e-17 92.8 186 51.1
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 6.5e-17 91.7 197 40.1
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 8.4e-17 91.3 173 40.5
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 1.1e-16 90.9 141 50.4
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.4e-16 90.5 184 39.1
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.4e-16 90.5 183 41.0
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.9e-16 90.1 165 45.5
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 1.9e-16 90.1 182 37.9
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 3.2e-16 89.4 198 49.0
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 3.2e-16 89.4 201 48.8
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 3.2e-16 89.4 185 38.9
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 3.2e-16 89.4 182 37.9
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 4.2e-16 89.0 134 55.2
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 4.2e-16 89.0 188 37.8
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 5.5e-16 88.6 179 39.1
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 5.5e-16 88.6 160 40.0
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.5e-16 88.6 176 40.3
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 9.3e-16 87.8 186 38.2
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.6e-15 87.0 197 38.6
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.6e-15 87.0 197 38.6
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.1e-15 86.7 196 38.3
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 2.7e-15 86.3 176 42.0
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 4.6e-15 85.5 126 42.9
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 1.0e-14 84.3 195 38.5
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 1.0e-14 84.3 200 43.0
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 1.8e-14 83.6 187 36.4
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.8e-14 83.6 180 44.4
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 2.3e-14 83.2 210 37.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 2.3e-14 83.2 186 40.3
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 5.1e-14 82.0 74 62.2
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.1e-14 82.0 178 46.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 6.7e-14 81.6 183 37.7
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 6.7e-14 81.6 179 44.1
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 6.7e-14 81.6 182 37.4
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 8.7e-14 81.3 189 35.4
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 8.7e-14 81.3 194 39.7
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 1.1e-13 80.9 184 46.2
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 1.5e-13 80.5 206 42.7
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 1.9e-13 80.1 203 39.4
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 3.3e-13 79.3 192 45.8
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 4.3e-13 79.0 182 45.6
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 5.7e-13 78.6 190 37.9
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 5.7e-13 78.6 77 57.1
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 5.7e-13 78.6 75 57.3
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.7e-13 78.6 189 40.2
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 9.7e-13 77.8 193 40.4
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 9.7e-13 77.8 195 37.9
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 9.7e-13 77.8 185 37.3
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 9.7e-13 77.8 183 38.8
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 1.3e-12 77.4 77 54.5
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 1.6e-12 77.0 169 30.8
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 1.6e-12 77.0 77 57.1
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 1.6e-12 77.0 82 54.9
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.6e-12 77.0 202 35.6
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 2.2e-12 76.6 184 37.0
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 2.2e-12 76.6 188 37.8
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.8e-12 76.3 172 35.5
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 4.8e-12 75.5 182 39.6
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 4.8e-12 75.5 188 36.2
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 6.3e-12 75.1 181 39.8
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.1e-11 74.3 190 36.3
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 1.8e-11 73.6 76 52.6
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 3.1e-11 72.8 186 36.0
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.2e-10 70.9 179 44.7
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 1.2e-10 70.9 187 39.0
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 2.0e-10 70.1 195 41.0
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.9e-10 68.6 175 42.9
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 5.9e-10 68.6 79 50.6
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 7.7e-10 68.2 189 43.9
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 3.8e-09 65.9 77 46.8
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 6.5e-09 65.1 79 49.4
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 8.5e-09 64.7 162 32.7
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 8.5e-09 64.7 179 34.6
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 1.4e-08 63.9 176 33.5
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.8e-06 57.0 138 32.6
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 1.8e-06 57.0 194 39.7


User provided reference genes

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