Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.4e-52 207.6 99 100.0
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.8e-48 194.5 99 93.9
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 8.5e-48 193.4 99 93.9
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.5e-47 191.8 99 92.9
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 2.5e-47 191.8 99 92.9
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.2e-47 191.4 99 92.9
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.6e-46 189.1 99 91.9
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 6.1e-46 187.2 96 92.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 6.1e-46 187.2 96 92.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 6.1e-46 187.2 96 93.8
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.4e-45 186.0 94 94.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 1.4e-45 186.0 96 91.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 1.4e-45 186.0 96 91.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 8.6e-40 166.8 99 83.8
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-39 165.2 97 84.5
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 3.2e-39 164.9 87 89.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 8.0e-38 160.2 85 88.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 8.0e-38 160.2 85 88.2
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 3.0e-37 158.3 99 73.7
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 5.2e-37 157.5 99 71.7
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.0e-36 155.6 99 68.7
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 2.6e-36 155.2 87 81.6
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 7.5e-36 153.7 88 78.4
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 7.5e-36 153.7 88 78.4
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 88 78.4
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 96 78.1
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.7e-35 152.5 92 75.0
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 4.9e-35 151.0 98 67.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 6.3e-35 150.6 94 72.3
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 8.3e-35 150.2 90 72.2
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 8.3e-35 150.2 94 72.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.1e-34 149.8 95 72.6
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.1e-34 149.8 79 84.8
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.1e-34 149.8 79 84.8
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.4e-34 149.4 90 72.2
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.4e-34 149.4 89 76.4
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.4e-34 149.4 92 70.7
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.4e-34 149.4 98 71.4
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.8e-34 149.1 99 67.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.8e-34 149.1 98 68.4
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.8e-34 149.1 99 71.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.8e-34 149.1 99 67.7
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.4e-34 148.7 92 77.2
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.1e-34 148.3 94 71.3
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 4.1e-34 147.9 99 68.7
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 9.2e-34 146.7 90 73.3
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 9.2e-34 146.7 94 70.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.2e-33 146.4 99 65.7
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 83.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 83.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.2e-33 146.4 79 83.5
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.6e-33 146.0 99 68.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.0e-33 145.6 89 71.9
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 3.5e-33 144.8 79 82.3
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 3.5e-33 144.8 96 68.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 4.5e-33 144.4 79 81.0
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 4.5e-33 144.4 79 81.0
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 4.5e-33 144.4 79 81.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 4.5e-33 144.4 95 71.6
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 5.9e-33 144.1 93 73.1
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-33 144.1 94 67.0
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 5.9e-33 144.1 94 67.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 7.8e-33 143.7 91 70.3
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 7.8e-33 143.7 94 67.0
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.0e-32 143.3 88 71.6
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.3e-32 142.9 95 71.6
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.7e-32 142.5 96 67.7
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.7e-32 142.5 87 72.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.7e-32 142.5 81 80.2
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.7e-32 142.5 90 68.9
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.3e-32 142.1 95 65.3
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 2.9e-32 141.7 79 78.5
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 3.8e-32 141.4 88 71.6
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 6.6e-32 140.6 79 79.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.6e-32 140.6 93 71.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 6.6e-32 140.6 93 71.0
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 6.6e-32 140.6 87 72.4
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 6.6e-32 140.6 96 66.7
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 6.6e-32 140.6 100 67.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 6.6e-32 140.6 93 66.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 8.6e-32 140.2 96 69.8
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 1.1e-31 139.8 80 77.5
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 1.1e-31 139.8 80 77.5
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.5e-31 139.4 88 71.6
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.5e-31 139.4 97 68.0
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.9e-31 139.0 79 78.5
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.9e-31 139.0 90 67.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.9e-31 139.0 79 77.2
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.3e-31 138.3 95 68.4
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 4.3e-31 137.9 79 77.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 4.3e-31 137.9 79 77.2
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 5.6e-31 137.5 86 74.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.6e-30 136.0 95 67.4
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.6e-30 136.0 78 76.9
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.1e-30 135.6 78 76.9
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.1e-30 135.6 78 75.6
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.8e-30 135.2 79 74.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.8e-30 135.2 79 75.9
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 4.7e-30 134.4 78 76.9
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 4.7e-30 134.4 78 75.6
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 6.1e-30 134.0 95 66.3
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 6.1e-30 134.0 84 73.8
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.0e-29 131.7 118 54.2
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 8.9e-29 130.2 120 55.8
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.6e-28 128.6 66 97.0
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.4e-26 122.9 68 82.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 4.1e-26 121.3 78 70.5
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.0e-25 119.0 90 56.7
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.5e-25 118.2 66 77.3
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.3e-24 115.5 66 75.8
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 3.0e-24 115.2 63 84.1
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 5.0e-24 114.4 72 70.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.9e-23 112.5 64 73.4
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.9e-23 112.5 66 69.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.5e-23 112.1 63 82.5
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 4.3e-23 111.3 74 67.6
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 9.5e-23 110.2 85 60.0
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.8e-22 108.6 66 72.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.8e-21 105.9 96 53.1
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.3e-21 105.5 67 73.1
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 4.4e-20 101.3 63 66.7
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.7e-19 98.2 52 76.9
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 4.9e-19 97.8 63 69.8
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 6.4e-19 97.4 63 68.3
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 8.3e-19 97.1 91 52.7
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.9e-18 95.9 64 65.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.3e-15 85.1 62 59.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 5.6e-15 84.3 68 60.3
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.2e-14 83.2 80 50.0
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.4e-13 79.7 79 46.8
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 4.0e-13 78.2 70 51.4
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.0e-12 75.9 61 57.4
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 7.5e-12 73.9 80 50.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 1.1e-10 70.1 33 84.8
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.2e-10 68.6 46 67.4


User provided reference genes

Program Settings