Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g24610 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.6e-129 466.1 232 100.0
BcaB03g14714 Brassica carinata HOM05D001860 ORTHO05D004922 6.1e-105 384.4 232 81.5
Thhalv10019583m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 2.3e-104 382.5 232 81.9
BcaC08g46388 Brassica carinata HOM05D001860 ORTHO05D004922 1.3e-102 376.7 227 80.6
AL2G28640 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 8.3e-102 374.0 232 80.6
BolC6t39394H Brassica oleracea HOM05D001482 ORTHO05D001499 1.1e-101 373.6 227 80.6
AT1G69520 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.0e-101 370.9 232 78.4
BraA07t31168Z Brassica rapa HOM05D001482 ORTHO05D001499 2.7e-100 369.0 227 79.7
A07p35820 Brassica napus HOM05D001482 ORTHO05D001499 3.5e-100 368.6 227 79.7
Carub.0002s1614 Capsella rubella HOM05D001860 ORTHO05D004922 5.0e-99 364.8 231 78.4
CARHR062450 Cardamine hirsuta HOM05D001860 ORTHO05D004922 1.7e-94 349.7 218 79.8
C06p40380 Brassica napus HOM05D001482 ORTHO05D001499 2.7e-84 315.8 233 70.0
Thhalv10018913m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 4.9e-78 295.0 214 67.8
BcaB03g15478 Brassica carinata HOM05D001860 ORTHO05D004922 3.2e-77 292.4 214 66.4
Sp5g24640 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.2e-76 290.4 214 66.4
BraA07t30786Z Brassica rapa HOM05D001860 ORTHO05D004922 7.8e-76 287.7 219 63.9
Aa31LG4G11270 Aethionema arabicum HOM05D001860 ORTHO05D004922 8.6e-75 284.3 254 59.4
CARHR062480 Cardamine hirsuta HOM05D001860 ORTHO05D004922 3.3e-74 282.3 201 68.7
Carub.0002s1617 Capsella rubella HOM05D001860 ORTHO05D004922 5.6e-74 281.6 214 63.6
AT1G69526 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 7.3e-74 281.2 214 63.6
THA.LOC104822184 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 1.5e-71 273.5 209 65.6
THA.LOC104822045 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.8e-68 261.2 217 61.8
Aa31LG4G11250 Aethionema arabicum HOM05D001860 ORTHO05D004922 6.6e-67 258.1 214 60.3
AT1G69523 Arabidopsis thaliana HOM05D001860 ORTHO05D004922 6.2e-65 251.5 214 57.5
C06p40330 Brassica napus HOM05D001860 ORTHO05D004922 6.2e-65 251.5 210 60.0
A07p35850 Brassica napus HOM05D001860 ORTHO05D004922 8.1e-65 251.1 211 60.2
Carub.0002s1616 Capsella rubella HOM05D001860 ORTHO05D004922 5.2e-64 248.4 214 56.5
BcaC08g46392 Brassica carinata HOM05D001860 ORTHO05D004922 2.6e-63 246.1 205 59.5
AL2G28650 Arabidopsis lyrata HOM05D001860 ORTHO05D004922 1.3e-62 243.8 210 58.6
BolC6t39399H Brassica oleracea HOM05D001860 ORTHO05D004922 1.7e-62 243.4 208 58.2
Carub.0002s1615 Capsella rubella HOM05D001860 ORTHO05D004922 1.7e-62 243.4 210 58.6
Sp5g24630 Schrenkiella parvula HOM05D001860 ORTHO05D004922 1.7e-62 243.4 212 56.6
BcaB03g14715 Brassica carinata HOM05D001860 ORTHO05D004922 4.9e-62 241.9 211 56.4
BcaB03g14720 Brassica carinata HOM05D001860 ORTHO05D004922 4.9e-62 241.9 205 59.0
A07p35830 Brassica napus HOM05D001860 ORTHO05D004922 7.1e-61 238.0 212 57.1
BraA07t31169Z Brassica rapa HOM05D001860 ORTHO05D004922 7.1e-61 238.0 212 57.1
CARHR062460 Cardamine hirsuta HOM05D001860 ORTHO05D004922 7.1e-61 238.0 215 55.8
A07p35840 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-60 237.3 212 57.1
BolC6t39396H Brassica oleracea HOM05D001860 ORTHO05D004922 1.2e-60 237.3 212 57.1
BolC6t39398H Brassica oleracea HOM05D001860 ORTHO05D004922 1.2e-60 237.3 212 57.1
BraA07t31170Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-60 237.3 212 57.1
BraA07t31171Z Brassica rapa HOM05D001860 ORTHO05D004922 1.2e-60 237.3 200 59.5
C06p40340 Brassica napus HOM05D001860 ORTHO05D004922 2.1e-60 236.5 212 57.1
THA.LOC104822044 Tarenaya hassleriana HOM05D001860 ORTHO05D004922 7.8e-60 234.6 245 52.2
TPR.G36138 Trifolium pratense HOM05D001860 ORTHO05D004922 5.1e-59 231.9 216 54.2
Potri.008G088500 Populus trichocarpa HOM05D001860 ORTHO05D004922 1.9e-58 229.9 209 56.5
Ca_04822_v3 Cicer arietinum L. HOM05D001860 ORTHO05D004922 4.3e-58 228.8 216 53.2
CsaV3_5G032890 Cucumis sativus L. HOM05D001860 ORTHO05D004922 7.3e-58 228.0 201 58.2
Psat2g116760 Pisum sativum HOM05D001860 ORTHO05D004922 7.3e-58 228.0 215 54.4
MELO3C012111.2 Cucumis melo HOM05D001860 ORTHO05D004922 1.2e-57 227.3 201 58.2
Medtr5g041780 Medicago truncatula HOM05D001860 ORTHO05D004922 2.1e-57 226.5 215 54.0
Manes.05G104100 Manihot esculenta HOM05D001860 ORTHO05D004922 2.8e-57 226.1 217 55.8
CsaV3_5G032900 Cucumis sativus L. HOM05D001860 ORTHO05D004922 3.6e-57 225.7 201 57.7
RcHm_v2.0_Chr4g0439511 Rosa chinensis HOM05D001860 ORTHO05D004922 3.6e-57 225.7 214 57.0
Sed0020595 Sechium edule HOM05D001860 ORTHO05D004922 3.6e-57 225.7 201 56.7
Oeu028270.1 Olea europaea HOM05D001860 ORTHO05D004922 8.1e-57 224.6 215 53.0
Lj2g0002858 Lotus japonicus HOM05D001860 ORTHO05D004922 1.4e-56 223.8 214 54.2
EL10Ac6g13236 Beta vulgaris HOM05D001860 ORTHO05D004922 1.8e-56 223.4 214 52.8
FAN07G2810 Fragaria x ananassa HOM05D001860 ORTHO05D004922 1.8e-56 223.4 211 56.9
Haze_11992 Corylus avellana HOM05D001860 ORTHO05D004922 2.4e-56 223.0 214 55.1
FAN22G1600 Fragaria x ananassa HOM05D001860 ORTHO05D004922 5.2e-56 221.9 213 55.4
arahy.Tifrunner.gnm1.ann1.0UW6S5 Arachis hypogaea HOM05D001860 ORTHO05D004922 6.9e-56 221.5 217 54.4
Gorai.013G087000 Gossypium raimondii HOM05D001860 ORTHO05D004922 6.9e-56 221.5 212 52.4
FAN12G1253 Fragaria x ananassa HOM05D001860 ORTHO05D004922 9.0e-56 221.1 213 55.9
TWI31G0055 Tripterygium wilfordii HOM05D001860 ORTHO05D004922 9.0e-56 221.1 214 53.3
Phvul.002G083300 Phaseolus vulgaris HOM05D001860 ORTHO05D004922 1.2e-55 220.7 215 53.5
Glyma.02G109300 Glycine max HOM05D001860 ORTHO05D004922 1.5e-55 220.3 214 53.7
GSVIVG01019959001 Vitis vinifera HOM05D001860 ORTHO05D004922 1.5e-55 220.3 214 52.3
CSS0022995 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 2.0e-55 219.9 214 52.8
CiPaw.06G086900 Carya illinoinensis HOM05D001860 ORTHO05D004922 2.0e-55 219.9 214 54.2
Ciclev10032245m.g Citrus clementina HOM05D001860 ORTHO05D004922 2.0e-55 219.9 214 52.8
Thecc.02G343500 Theobroma cacao HOM05D001860 ORTHO05D004922 2.0e-55 219.9 212 52.8
SalBow2G3316 Salvia bowleyana HOM05D001860 ORTHO05D004922 2.6e-55 219.5 215 53.0
MSTRG.7790 Avicennia marina HOM05D001860 ORTHO05D004922 4.4e-55 218.8 214 52.3
Duzib248G0566 Durio zibethinus HOM05D001860 ORTHO05D004922 5.8e-55 218.4 212 52.8
Eucgr.B03211 Eucalyptus grandis HOM05D001860 ORTHO05D004922 7.6e-55 218.0 201 57.2
BcaC08g46390 Brassica carinata HOM05D001860 ORTHO05D004922 9.9e-55 217.6 184 58.7
Cfa008963 Carpinus fangiana HOM05D001860 ORTHO05D004922 9.9e-55 217.6 212 54.2
CDE06G2440 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 9.9e-55 217.6 214 51.4
Os02g0744100 Oryza sativa ssp. japonica HOM05D001860 ORTHO05D004922 9.9e-55 217.6 214 50.9
Hund25222 Selenicereus undatus HOM05D001860 ORTHO05D004922 9.9e-55 217.6 214 52.3
AUR62032811 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.7e-54 216.9 214 51.9
Nn3g17288 Nelumbo nucifera HOM05D001860 ORTHO05D004922 3.8e-54 215.7 215 53.0
Atru.chr11.1760 Acer truncatum HOM05D001860 ORTHO05D004922 4.9e-54 215.3 215 54.0
SGA_v2.0_scaffold172G38956 Striga asiatica HOM05D001860 ORTHO05D004922 4.9e-54 215.3 215 50.7
CANSAT64G2732 Cannabis sativa HOM05D001860 ORTHO05D004922 6.4e-54 214.9 214 52.3
Migut.L01273 Erythranthe guttata HOM05D001860 ORTHO05D004922 1.1e-53 214.2 215 53.0
Hma1.2p1_1079F.1_g254970 Hydrangea macrophylla HOM05D001860 ORTHO05D004922 1.1e-53 214.2 214 51.9
arahy.Tifrunner.gnm1.ann1.F2WL4X Arachis hypogaea HOM05D001860 ORTHO05D004922 1.9e-53 213.4 245 48.6
Lsat_1_v5_gn_3_52040 Lactuca sativa HOM05D001860 ORTHO05D004922 3.2e-53 212.6 214 50.5
arahy.Tifrunner.gnm1.ann1.WF3EDY Arachis hypogaea HOM05D001860 ORTHO05D004922 4.2e-53 212.2 245 48.2
Actinidia31905 Actinidia chinensis HOM05D001860 ORTHO05D004922 5.4e-53 211.8 210 51.4
ECA246G1483 Erigeron canadensis HOM05D001860 ORTHO05D004922 5.4e-53 211.8 214 50.5
Lj3A1035T53 Lonicera japonica HOM05D001860 ORTHO05D004922 5.4e-53 211.8 216 51.9
Aqoxy5G04114 Aquilegia oxysepala HOM05D001860 ORTHO05D004922 9.3e-53 211.1 202 54.5
QL03p068521 Quercus lobata HOM05D001860 ORTHO05D004922 9.3e-53 211.1 213 52.1
HanXRQChr17g0545281 Helianthus annuus HOM05D001860 ORTHO05D004922 2.7e-52 209.5 215 50.2
TAR629G3174 Trochodendron aralioides HOM05D001860 ORTHO05D004922 2.7e-52 209.5 198 54.5
SEGI_35280 Sequoiadendron giganteum HOM05D001860 ORTHO05D004922 3.5e-52 209.1 214 49.5
BolC6t38800H Brassica oleracea HOM05D000005 ORTHO05D042562 7.8e-52 208.0 272 47.1
C06p36870 Brassica napus HOM05D000005 ORTHO05D042562 1.3e-51 207.2 271 46.5
CAN.G771.16 Capsicum annuum HOM05D001860 ORTHO05D004922 2.3e-51 206.5 212 49.1
ClCG05G024130 Citrullus lanatus HOM05D001860 ORTHO05D004922 2.3e-51 206.5 174 60.9
MBI05_g10765_MAGBIO Magnolia biondii HOM05D001860 ORTHO05D004922 3.0e-51 206.1 209 52.6
MD16G1070300 Malus domestica HOM05D001860 ORTHO05D004922 5.1e-51 205.3 233 49.8
FvH4_4g31120 Fragaria vesca HOM05D001860 ORTHO05D004922 6.6e-51 204.9 214 53.7
QL03p068503 Quercus lobata HOM05D001860 ORTHO05D004922 6.6e-51 204.9 187 57.2
Peaxi162Scf01530g00038 Petunia axillaris HOM05D001860 ORTHO05D004922 1.1e-50 204.1 214 50.5
Cc11_g12800 Coffea canephora HOM05D001860 ORTHO05D004922 1.9e-50 203.4 214 50.5
Rhsim12G0064600 Rhododendron simsii HOM05D001860 ORTHO05D004922 3.3e-50 202.6 214 48.6
Nitab4.5_0006433g0040 Nicotiana tabacum HOM05D001860 ORTHO05D004922 5.6e-50 201.8 211 49.8
QL03p068489 Quercus lobata HOM05D001860 ORTHO05D004922 7.3e-50 201.4 171 60.8
C06p40360 Brassica napus HOM05D001860 ORTHO05D004922 9.6e-50 201.1 181 56.4
Sopen06g035410 Solanum pennellii HOM05D001860 ORTHO05D004922 9.6e-50 201.1 212 49.5
DCAR_026253 Daucus carota HOM05D001016 ORTHO05D003396 1.6e-49 200.3 225 46.7
Solyc06g084030.3 Solanum lycopersicum HOM05D001860 ORTHO05D004922 1.6e-49 200.3 212 49.5
BcaC08g45887 Brassica carinata HOM05D001860 ORTHO05D004922 2.8e-49 199.5 131 73.3
MELO3C012110.2 Cucumis melo HOM05D001860 ORTHO05D004922 3.6e-49 199.1 229 49.3
PSO017G0798 Papaver somniferum HOM05D001860 ORTHO05D004922 3.6e-49 199.1 214 49.5
PGSC0003DMG400020063 Solanum tuberosum HOM05D001860 ORTHO05D004922 3.6e-49 199.1 212 49.5
Nitab4.5_0001044g0130 Nicotiana tabacum HOM05D001860 ORTHO05D004922 4.8e-49 198.7 211 48.8
unitig_26.g10298 Utricularia gibba HOM05D001860 ORTHO05D004922 8.1e-49 198.0 238 45.0
Pp3c24_6910 Physcomitrium patens HOM05D001860 ORTHO05D004922 1.8e-48 196.8 218 45.9
CDE04G1474 Ceratophyllum demersum HOM05D001860 ORTHO05D004922 2.4e-48 196.4 219 46.6
PSO478G0757 Papaver somniferum HOM05D001860 ORTHO05D004922 2.4e-48 196.4 215 48.8
HPP92_016837 Vanilla planifolia HOM05D001860 ORTHO05D004922 2.4e-48 196.4 220 45.9
Zm00001eb194590 Zea mays HOM05D001860 ORTHO05D004922 2.4e-48 196.4 218 45.9
Sabra08G0066100 Salix brachista HOM05D001860 ORTHO05D004922 2.6e-47 193.0 239 46.9
COL.COLO4_22943 Corchorus olitorius HOM05D001860 ORTHO05D004922 9.9e-47 191.0 225 46.7
vmacro01268 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 9.9e-47 191.0 251 42.6
ATR0564G196 Amborella trichopoda HOM05D001860 ORTHO05D004922 1.7e-46 190.3 216 47.2
Lalb_Chr04g0255941 Lupinus albus HOM05D001860 ORTHO05D004922 2.2e-46 189.9 283 41.3
A07p31570 Brassica napus HOM05D001860 ORTHO05D004922 2.9e-46 189.5 120 75.0
Mapoly0002s0191 Marchantia polymorpha HOM05D001860 ORTHO05D004922 2.4e-45 186.4 216 46.8
Sp5g24620 Schrenkiella parvula HOM05D001860 ORTHO05D004922 4.6e-44 182.2 144 62.5
AagrBONN_evm.TU.Sc2ySwM_368.914 Anthoceros agrestis HOM05D001860 ORTHO05D004922 1.3e-43 180.6 198 50.0
SMO239G0167 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.8e-43 180.3 213 44.6
vmacro01267 Vaccinium macrocarpon HOM05D001860 ORTHO05D004922 2.3e-43 179.9 233 43.3
FAN17G3114 Fragaria x ananassa HOM05D001860 ORTHO05D004922 8.1e-41 171.4 211 48.8
SMO137G0248 Selaginella moellendorffii HOM05D001860 ORTHO05D004922 1.2e-39 167.5 196 43.9
Prupe.1G276900 Prunus persica HOM05D001860 ORTHO05D004922 1.3e-38 164.1 147 57.8
C06p40370 Brassica napus HOM05D001860 ORTHO05D004922 1.2e-36 157.5 121 62.8
PGR102G3336 Punica granatum HOM05D001860 ORTHO05D004922 1.6e-36 157.1 147 52.4
Gohir.D13G076400 Gossypium hirsutum HOM05D001860 ORTHO05D004922 2.1e-36 156.8 147 51.7
Gohir.A13G076700 Gossypium hirsutum HOM05D001860 ORTHO05D004922 4.6e-36 155.6 147 51.7
Oeu028272.1 Olea europaea HOM05D001860 ORTHO05D004922 1.6e-33 147.1 127 59.8
MCO09G753 Micromonas commoda HOM05D001860 ORTHO05D004922 2.9e-30 136.3 145 46.9
BcaB03g14717 Brassica carinata HOM05D001860 ORTHO05D004922 6.7e-27 125.2 122 54.1
PRCOL_00000783 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 8.7e-27 124.8 149 47.0
CBR_g41443 Chara braunii HOM05D001860 ORTHO05D004922 2.5e-26 123.2 195 37.9
Ah.02g129590 Amaranthus hybridus HOM05D001860 ORTHO05D004922 7.4e-26 121.7 216 35.6
AUR62005816 Chenopodium quinoa HOM05D001860 ORTHO05D004922 1.6e-25 120.6 125 48.8
MCO03G556 Micromonas commoda HOM05D001860 ORTHO05D004922 2.2e-25 120.2 183 39.3
Sc11g0002060 Simmondsia chinensis HOM05D001860 ORTHO05D004922 3.7e-25 119.4 113 51.3
CSS0019961 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 1.8e-24 117.1 125 47.2
PRCOL_00003589 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 3.4e-23 112.8 184 39.1
Cre07.g342550 Chlamydomonas reinhardtii HOM05D001860 ORTHO05D004922 4.5e-23 112.5 185 36.8
Thhalv10019188m.g Eutrema salsugineum HOM05D001860 ORTHO05D004922 3.6e-20 102.8 95 51.6
CSS0034144 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.0e-19 99.8 85 58.8
CSS0016207 Camellia sinensis var. sinensis HOM05D001860 ORTHO05D004922 3.7e-17 92.8 78 59.0
PRCOL_00001331 Prasinoderma coloniale HOM05D001860 ORTHO05D004922 1.3e-14 84.3 176 32.4
AagrBONN_evm.TU.Sc2ySwM_368.1265 Anthoceros agrestis HOM05D019459 ORTHO05D019626 1.2e-12 77.8 178 31.5
Dinv16666 Davidia involucrata HOM05D001860 ORTHO05D004922 1.6e-12 77.4 95 42.1
CBR_g34579 Chara braunii HOM05D001860 ORTHO05D019626 2.1e-12 77.0 176 33.0
Cpa.g.sc350.4 Carica papaya HOM05D001860 ORTHO05D004922 3.9e-11 72.8 82 42.7
VMungo1383G2064 Vigna mungo HOM05D001860 ORTHO05D004922 1.1e-10 71.2 97 36.1
Thecc.01G276100 Theobroma cacao HOM05D001860 ORTHO05D004922 4.8e-09 65.9 84 40.5
Mapoly0068s0103 Marchantia polymorpha HOM05D019459 ORTHO05D019626 1.1e-08 64.7 178 30.3
Cfa024139 Carpinus fangiana HOM05D001860 ORTHO05D004922 1.2e-07 61.2 153 30.1
arahy.Tifrunner.gnm1.ann1.661SM0 Arachis hypogaea HOM05D001860 ORTHO05D004922 5.9e-07 58.9 85 42.4


User provided reference genes

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