Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g24480 Schrenkiella parvula HOM05D003669 ORTHO05D005046 6.4e-61 237.3 123 100.0
BcaB03g14707 Brassica carinata HOM05D003669 ORTHO05D005046 9.0e-31 137.1 82 87.8
A07p35780 Brassica napus HOM05D003669 ORTHO05D005046 1.2e-30 136.7 82 87.8
C06p40420 Brassica napus HOM05D003669 ORTHO05D005046 1.2e-30 136.7 82 87.8
BolC6t39390H Brassica oleracea HOM05D003669 ORTHO05D005046 1.2e-30 136.7 82 87.8
BraA07t31164Z Brassica rapa HOM05D003669 ORTHO05D005046 1.2e-30 136.7 82 87.8
Thhalv10018794m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 4.9e-29 131.3 72 93.1
Aa31LG4G11440 Aethionema arabicum HOM05D003669 ORTHO05D005046 1.1e-28 130.2 82 85.4
AL2G28540 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 8.7e-26 120.6 79 82.3
AT1G69430 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 8.7e-26 120.6 79 82.3
THA.LOC104822905 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 8.7e-26 120.6 78 78.2
THA.LOC104808637 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 1.5e-25 119.8 78 78.2
Carub.0002s1603 Capsella rubella HOM05D003669 ORTHO05D005046 1.9e-25 119.4 79 81.0
CARHR062320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 1.9e-25 119.4 79 81.0
Aa31LG7G8440 Aethionema arabicum HOM05D003669 ORTHO05D005046 7.4e-25 117.5 73 78.1
Nitab4.5_0000391g0150 Nicotiana tabacum HOM05D003669 ORTHO05D005046 1.3e-24 116.7 77 74.0
CAN.G964.18 Capsicum annuum HOM05D003669 ORTHO05D005046 2.2e-24 115.9 77 72.7
Migut.L01241 Erythranthe guttata HOM05D003669 ORTHO05D005046 3.7e-24 115.2 73 76.7
Cc11_g12530 Coffea canephora HOM05D003669 ORTHO05D005046 4.8e-24 114.8 75 78.7
Oeu041090.1 Olea europaea HOM05D003669 ORTHO05D005046 4.8e-24 114.8 73 75.3
Cpa.g.sc1.72 Carica papaya HOM05D003669 ORTHO05D005046 6.3e-24 114.4 72 79.2
CSS0046805 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 1.4e-23 113.2 77 72.7
PGR102G2611 Punica granatum HOM05D003669 ORTHO05D005046 1.4e-23 113.2 69 84.1
Solyc01g010990.2 Solanum lycopersicum HOM05D003669 ORTHO05D005046 1.4e-23 113.2 77 67.5
Sopen01g006940 Solanum pennellii HOM05D003669 ORTHO05D005046 1.4e-23 113.2 77 67.5
Ah.03g134650 Amaranthus hybridus HOM05D003669 ORTHO05D005046 1.8e-23 112.8 69 84.1
CANSAT64G1602 Cannabis sativa HOM05D003669 ORTHO05D005046 1.8e-23 112.8 71 78.9
TWI31G0268 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 1.8e-23 112.8 73 79.5
COL.COLO4_27966 Corchorus olitorius HOM05D003669 ORTHO05D005046 2.4e-23 112.5 73 75.3
Peaxi162Scf00222g00021 Petunia axillaris HOM05D003669 ORTHO05D005046 2.4e-23 112.5 77 70.1
Duzib251G0808 Durio zibethinus HOM05D003669 ORTHO05D005046 3.1e-23 112.1 72 76.4
Solyc05g012870.1 Solanum lycopersicum HOM05D003669 ORTHO05D005046 3.1e-23 112.1 77 70.1
PGSC0003DMG400026831 Solanum tuberosum HOM05D003669 ORTHO05D005046 3.1e-23 112.1 73 69.9
PGSC0003DMG400028338 Solanum tuberosum HOM05D003669 ORTHO05D005046 3.1e-23 112.1 77 70.1
Thecc.02G339000 Theobroma cacao HOM05D003669 ORTHO05D005046 3.1e-23 112.1 73 75.3
CAN.G314.1 Capsicum annuum HOM05D003669 ORTHO05D005046 4.1e-23 111.7 77 66.2
Hma1.2p1_0354F.1_g133780 Hydrangea macrophylla HOM05D003669 ORTHO05D005046 4.1e-23 111.7 73 75.3
EL10Ac6g13272 Beta vulgaris HOM05D003669 ORTHO05D005046 5.3e-23 111.3 69 76.8
DCAR_023812 Daucus carota HOM05D003669 ORTHO05D005046 5.3e-23 111.3 70 78.6
Lj3P1033T30 Lonicera japonica HOM05D003669 ORTHO05D005046 5.3e-23 111.3 72 76.4
Nitab4.5_0000141g0030 Nicotiana tabacum HOM05D003669 ORTHO05D005046 5.3e-23 111.3 77 67.5
Nitab4.5_0000720g0060 Nicotiana tabacum HOM05D003669 ORTHO05D005046 5.3e-23 111.3 77 67.5
Cfa008924 Carpinus fangiana HOM05D003669 ORTHO05D005046 6.9e-23 110.9 78 70.5
CiPaw.06G089100 Carya illinoinensis HOM05D003669 ORTHO05D005046 6.9e-23 110.9 62 82.3
Ciclev10033399m.g Citrus clementina HOM05D003669 ORTHO05D005046 6.9e-23 110.9 73 72.6
Haze_11953 Corylus avellana HOM05D003669 ORTHO05D005046 6.9e-23 110.9 78 70.5
HanXRQChr08g0211271 Helianthus annuus HOM05D003669 ORTHO05D005046 9.0e-23 110.5 73 74.0
Peaxi162Scf00097g00103 Petunia axillaris HOM05D003669 ORTHO05D005046 9.0e-23 110.5 77 67.5
SGA_v2.0_scaffold16G07737 Striga asiatica HOM05D003669 ORTHO05D005046 9.0e-23 110.5 73 72.6
GSVIVG01012487001 Vitis vinifera HOM05D003669 ORTHO05D005046 9.0e-23 110.5 69 81.2
Atru.chr11.1711 Acer truncatum HOM05D003669 ORTHO05D005046 1.2e-22 110.2 71 77.5
Duzib268G1480 Durio zibethinus HOM05D003669 ORTHO05D005046 1.2e-22 110.2 88 67.0
Potri.010G163400 Populus trichocarpa HOM05D003669 ORTHO05D005046 1.2e-22 110.2 73 76.7
Rhsim12G0133100 Rhododendron simsii HOM05D003669 ORTHO05D005046 1.2e-22 110.2 74 74.3
SalBow2G2159 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.2e-22 110.2 73 72.6
SalBow2G3632 Salvia bowleyana HOM05D003669 ORTHO05D005046 1.2e-22 110.2 73 72.6
Gohir.D13G078300 Gossypium hirsutum HOM05D003669 ORTHO05D005046 1.5e-22 109.8 69 78.3
Manes.01G032000 Manihot esculenta HOM05D003669 ORTHO05D005046 1.5e-22 109.8 73 75.3
Nitab4.5_0028573g0010 Nicotiana tabacum HOM05D003669 ORTHO05D005046 1.5e-22 109.8 77 68.8
Sc11g0002160 Simmondsia chinensis HOM05D003669 ORTHO05D005046 1.5e-22 109.8 72 73.6
Aqoxy3G03503 Aquilegia oxysepala HOM05D003669 ORTHO05D005046 2.0e-22 109.4 73 75.3
CSS0031393 Camellia sinensis var. sinensis HOM05D003669 ORTHO05D005046 2.0e-22 109.4 73 75.3
Glyma.07G227800 Glycine max HOM05D003669 ORTHO05D005046 2.0e-22 109.4 73 74.0
Prupe.1G280100 Prunus persica HOM05D003669 ORTHO05D005046 2.0e-22 109.4 72 75.0
CARHR025320 Cardamine hirsuta HOM05D003669 ORTHO05D005046 2.6e-22 109.0 73 71.2
Glyma.20G030800 Glycine max HOM05D003669 ORTHO05D005046 2.6e-22 109.0 73 74.0
Lj4g0023966 Lotus japonicus HOM05D003669 ORTHO05D005046 2.6e-22 109.0 73 74.0
Medtr4g082350 Medicago truncatula HOM05D003669 ORTHO05D005046 2.6e-22 109.0 73 74.0
Ca_23887_v3 Cicer arietinum L. HOM05D003669 ORTHO05D005046 3.4e-22 108.6 73 75.3
Phvul.002G168800 Phaseolus vulgaris HOM05D003669 ORTHO05D005046 3.4e-22 108.6 78 70.5
RcHm_v2.0_Chr7g0221801 Rosa chinensis HOM05D003669 ORTHO05D005046 3.4e-22 108.6 72 76.4
VMungo0251G2119 Vigna mungo HOM05D003669 ORTHO05D005046 3.4e-22 108.6 73 74.0
AL1G39080 Arabidopsis lyrata HOM05D003669 ORTHO05D005046 4.5e-22 108.2 73 72.6
AT1G26650 Arabidopsis thaliana HOM05D003669 ORTHO05D005046 4.5e-22 108.2 73 72.6
AUR62005854 Chenopodium quinoa HOM05D003669 ORTHO05D005046 4.5e-22 108.2 82 67.1
MSTRG.7776 Avicennia marina HOM05D003669 ORTHO05D005046 5.9e-22 107.8 69 73.9
ECA233G0305 Erigeron canadensis HOM05D003669 ORTHO05D005046 5.9e-22 107.8 72 73.6
Thhalv10008119m.g Eutrema salsugineum HOM05D003669 ORTHO05D005046 7.6e-22 107.5 74 74.3
Gorai.013G089500 Gossypium raimondii HOM05D003669 ORTHO05D005046 7.6e-22 107.5 69 76.8
MBI19_g28315_MAGBIO Magnolia biondii HOM05D003669 ORTHO05D005046 7.6e-22 107.5 62 82.3
MSTRG.725 Avicennia marina HOM05D003669 ORTHO05D005046 1.0e-21 107.1 70 78.6
AUR62032846 Chenopodium quinoa HOM05D003669 ORTHO05D005046 1.0e-21 107.1 82 65.9
Lalb_Chr09g0329151 Lupinus albus HOM05D003669 ORTHO05D005046 1.0e-21 107.1 73 71.2
MD16G1066800 Malus domestica HOM05D003669 ORTHO05D005046 1.3e-21 106.7 72 75.0
Carub.0001s2438 Capsella rubella HOM05D003669 ORTHO05D005046 1.7e-21 106.3 73 69.9
Duzib248G1252 Durio zibethinus HOM05D003669 ORTHO05D005046 2.2e-21 105.9 77 68.8
Peaxi162Scf00038g02649 Petunia axillaris HOM05D003669 ORTHO05D005046 2.2e-21 105.9 73 71.2
Sabra10G0124200 Salix brachista HOM05D003669 ORTHO05D005046 2.2e-21 105.9 73 72.6
Psat7g135560 Pisum sativum HOM05D003669 ORTHO05D005046 2.9e-21 105.5 78 69.2
FvH4_5g29140 Fragaria vesca HOM05D003669 ORTHO05D005046 3.8e-21 105.1 55 90.9
FAN18G1113 Fragaria x ananassa HOM05D003669 ORTHO05D005046 3.8e-21 105.1 55 90.9
Lj6P783T30 Lonicera japonica HOM05D003669 ORTHO05D005046 3.8e-21 105.1 80 63.8
Nn4g23289 Nelumbo nucifera HOM05D003669 ORTHO05D005046 3.8e-21 105.1 72 68.1
Potri.008G091500 Populus trichocarpa HOM05D003669 ORTHO05D005046 3.8e-21 105.1 56 87.5
ATR0730G059 Amborella trichopoda HOM05D003669 ORTHO05D005046 5.0e-21 104.8 69 72.5
C05p24360 Brassica napus HOM05D003669 ORTHO05D005046 5.0e-21 104.8 69 79.7
FAN08G0960 Fragaria x ananassa HOM05D003669 ORTHO05D005046 5.0e-21 104.8 55 90.9
MD13G1068000 Malus domestica HOM05D003669 ORTHO05D005046 5.0e-21 104.8 72 73.6
Sabra08G0068500 Salix brachista HOM05D003669 ORTHO05D005046 5.0e-21 104.8 73 72.6
TWI75G1484 Tripterygium wilfordii HOM05D003669 ORTHO05D005046 5.0e-21 104.8 73 75.3
BolC5t31170H Brassica oleracea HOM05D003669 ORTHO05D005046 1.1e-20 103.6 69 78.3
HPP92_023618 Vanilla planifolia HOM05D003669 ORTHO05D005046 1.1e-20 103.6 78 67.9
FAN04G2355 Fragaria x ananassa HOM05D003669 ORTHO05D005046 1.4e-20 103.2 55 89.1
SpUn0008_0120 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.4e-20 103.2 74 73.0
SpUn0019_0020 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.4e-20 103.2 74 73.0
SpUn0296_0010 Schrenkiella parvula HOM05D003669 ORTHO05D005046 1.4e-20 103.2 74 73.0
TPR.G34083 Trifolium pratense HOM05D003669 ORTHO05D005046 1.4e-20 103.2 73 69.9
Os07g0595900 Oryza sativa ssp. japonica HOM05D003669 ORTHO05D005046 1.9e-20 102.8 61 78.7
BcaC05g26402 Brassica carinata HOM05D003669 ORTHO05D005046 2.5e-20 102.4 69 76.8
ClCG05G023980 Citrullus lanatus HOM05D003669 ORTHO05D005046 2.5e-20 102.4 54 92.6
MELO3C012128.2 Cucumis melo HOM05D003669 ORTHO05D005046 2.5e-20 102.4 54 92.6
Sed0017288 Sechium edule HOM05D003669 ORTHO05D005046 2.5e-20 102.4 54 92.6
A09p40060 Brassica napus HOM05D003669 ORTHO05D005046 3.2e-20 102.1 69 76.8
BraA09t39502Z Brassica rapa HOM05D003669 ORTHO05D005046 3.2e-20 102.1 69 76.8
THA.LOC104822182 Tarenaya hassleriana HOM05D003669 ORTHO05D005046 3.2e-20 102.1 55 89.1
unitig_8.g3190 Utricularia gibba HOM05D003669 ORTHO05D005046 3.2e-20 102.1 95 56.8
Nn3g17339 Nelumbo nucifera HOM05D003669 ORTHO05D005046 4.2e-20 101.7 77 62.3
PSO063G6284 Papaver somniferum HOM05D003669 ORTHO05D005046 4.2e-20 101.7 61 78.7
TAR006G0001 Trochodendron aralioides HOM05D003669 ORTHO05D005046 5.5e-20 101.3 88 62.5
CiPaw.05G129400 Carya illinoinensis HOM05D003669 ORTHO05D005046 9.3e-20 100.5 56 85.7
CsaV3_5G033070 Cucumis sativus L. HOM05D003669 ORTHO05D005046 1.2e-19 100.1 54 90.7
PSO063G3148 Papaver somniferum HOM05D003669 ORTHO05D005046 1.2e-19 100.1 61 77.0
QL03p069846 Quercus lobata HOM05D003669 ORTHO05D005046 2.7e-19 99.0 78 60.3
Gohir.A03G102600 Gossypium hirsutum HOM05D003669 ORTHO05D005046 1.8e-18 96.3 66 68.2
Gohir.D02G127500 Gossypium hirsutum HOM05D003669 ORTHO05D005046 1.8e-18 96.3 68 66.2
Gorai.005G143100 Gossypium raimondii HOM05D003669 ORTHO05D005046 1.8e-18 96.3 68 66.2
HanXRQChr12g0379211 Helianthus annuus HOM05D003669 ORTHO05D005046 8.8e-18 94.0 58 75.9
SEGI_22214 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 1.9e-17 92.8 69 62.3
Actinidia33230 Actinidia chinensis HOM05D003669 ORTHO05D005046 2.5e-17 92.4 48 91.7
CDE02G4737 Ceratophyllum demersum HOM05D003669 ORTHO05D005046 2.5e-17 92.4 55 74.5
PSO478G5197 Papaver somniferum HOM05D003669 ORTHO05D005046 9.7e-17 90.5 68 63.2
TAR381G0119 Trochodendron aralioides HOM05D003669 ORTHO05D005046 4.8e-16 88.2 55 70.9
unitig_749.g13213 Utricularia gibba HOM05D003669 ORTHO05D005046 1.4e-15 86.7 87 51.7
unitig_22.g6502 Utricularia gibba HOM05D003669 ORTHO05D005046 2.0e-14 82.8 61 59.0
Dinv34099 Davidia involucrata HOM05D003669 ORTHO05D005046 1.4e-10 70.1 34 94.1
Lsat_1_v5_gn_8_49161 Lactuca sativa HOM05D003669 ORTHO05D005046 6.7e-10 67.8 73 49.3
unitig_26.g10293 Utricularia gibba HOM05D003669 ORTHO05D005046 3.3e-09 65.5 77 41.6
CDE04G3171 Ceratophyllum demersum HOM05D003669 ORTHO05D005046 7.0e-07 57.8 30 83.3
FAN13G0674 Fragaria x ananassa HOM05D003669 ORTHO05D005046 9.1e-07 57.4 30 86.7
Sopen05g007700 Solanum pennellii HOM05D003669 ORTHO05D005046 9.1e-07 57.4 27 92.6
Dinv16692 Davidia involucrata HOM05D003669 ORTHO05D005046 3.4e-06 55.5 27 88.9
SEGI_00303 Sequoiadendron giganteum HOM05D003669 ORTHO05D005046 3.4e-06 55.5 57 47.4


User provided reference genes

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