Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.1e-143 512.3 252 100.0
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 4.7e-127 458.0 252 89.3
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 5.2e-126 454.5 249 89.6
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 5.2e-126 454.5 249 89.6
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.4e-123 446.4 253 88.9
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 2.7e-122 442.2 249 87.6
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.1e-120 436.8 253 87.0
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.7e-119 431.4 256 85.5
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 1.4e-115 419.9 252 84.5
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 2.4e-115 419.1 257 83.3
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 1.5e-112 409.8 248 83.5
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 1.5e-112 409.8 256 81.6
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 8.1e-111 404.1 249 82.3
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.4e-110 402.5 256 80.9
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 2.8e-79 299.3 271 62.7
BraA02t06569Z Brassica rapa HOM05D004123 ORTHO05D004768 3.2e-75 285.8 176 83.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 2.9e-60 236.1 235 55.7
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 6.1e-58 228.4 265 52.8
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.2e-50 204.1 221 58.4
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 2.3e-49 199.9 279 51.6
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 9.7e-48 194.5 281 49.8
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 3.7e-47 192.6 275 50.5
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 6.3e-47 191.8 275 50.5
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 6.3e-47 191.8 275 50.5
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 1.2e-45 187.6 280 48.6
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 7.7e-45 184.9 267 49.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-44 184.1 264 48.9
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.3e-44 184.1 280 46.8
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 1.3e-44 184.1 272 48.9
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.7e-44 183.7 280 45.0
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.7e-44 183.7 247 51.4
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 2.2e-44 183.3 227 54.6
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 2.2e-44 183.3 265 48.3
THA.LOC104805006 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 2.5e-43 179.9 263 46.0
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 7.2e-43 178.3 279 45.2
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.7e-42 176.4 235 50.2
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.7e-42 176.4 225 52.0
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 3.6e-42 176.0 295 45.1
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 3.6e-42 176.0 271 49.1
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 1.4e-41 174.1 268 45.9
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 2.3e-41 173.3 302 43.4
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.0e-41 172.6 222 51.4
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 5.2e-41 172.2 276 43.8
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 3.4e-40 169.5 236 50.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 4.4e-40 169.1 298 44.6
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 7.5e-40 168.3 234 48.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 9.8e-40 167.9 238 48.3
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 2.2e-39 166.8 271 46.5
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 2.8e-39 166.4 228 47.4
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 8.3e-39 164.9 273 44.3
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 1.8e-38 163.7 232 49.1
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 9.1e-38 161.4 249 46.2
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 2.7e-37 159.8 293 43.7
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 4.5e-37 159.1 229 46.7
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 5.9e-37 158.7 292 41.1
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 7.7e-37 158.3 242 47.5
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 1.7e-36 157.1 232 46.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 2.3e-36 156.8 292 42.5
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 3.8e-36 156.0 252 46.8
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 8.6e-36 154.8 219 49.8
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 2.5e-35 153.3 254 45.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 4.2e-35 152.5 277 44.0
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 1.2e-34 151.0 271 41.7
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 1.6e-34 150.6 311 41.2
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 2.1e-34 150.2 260 42.7
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 2.1e-34 150.2 275 43.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 2.8e-34 149.8 238 45.8
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 4.7e-34 149.1 272 40.8
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 6.1e-34 148.7 284 41.5
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 8.0e-34 148.3 203 49.3
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 8.0e-34 148.3 211 47.4
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 1.0e-33 147.9 229 47.6
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 3.0e-33 146.4 258 40.7
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 5.2e-33 145.6 249 43.8
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 3.4e-32 142.9 233 44.6
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 4.4e-32 142.5 264 44.7
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 5.7e-32 142.1 238 44.5
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.7e-31 140.6 248 44.0
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 2.2e-31 140.2 211 44.1
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 2.8e-31 139.8 267 40.8
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 2.8e-31 139.8 209 45.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 2.8e-31 139.8 255 45.1
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 3.7e-31 139.4 228 44.7
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 6.3e-31 138.7 242 42.1
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.1e-30 137.9 268 40.3
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 3.2e-30 136.3 216 46.3
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 9.2e-30 134.8 197 48.2
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 9.2e-30 134.8 206 44.7
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 1.2e-29 134.4 216 43.1
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.0e-29 133.7 288 38.2
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.0e-29 133.7 288 38.2
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 7.8e-29 131.7 222 43.2
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 1.7e-28 130.6 246 40.2
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 2.9e-28 129.8 212 44.3
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 6.6e-28 128.6 220 44.5
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 6.6e-28 128.6 295 36.9
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 8.6e-28 128.3 208 43.8
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 1.5e-27 127.5 196 42.3
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 1.5e-27 127.5 97 72.2
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 2.5e-27 126.7 226 44.2
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 3.3e-27 126.3 213 42.7
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 4.3e-27 125.9 204 43.6
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 5.6e-27 125.6 183 48.1
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 5.6e-27 125.6 250 39.2
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 9.5e-27 124.8 226 43.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 4.7e-26 122.5 143 53.1
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 6.1e-26 122.1 98 64.3
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.0e-25 121.3 211 43.1
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 5.2e-25 119.0 105 63.8
BcaC03g14956 Brassica carinata HOM05D004123 ORTHO05D004768 1.5e-24 117.5 68 85.3
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 2.0e-24 117.1 219 42.0
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.0e-24 117.1 183 48.1
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.4e-24 116.3 242 39.3
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.3e-23 114.4 83 73.5
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.7e-23 114.0 234 42.7
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 3.7e-23 112.8 234 39.7
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.1e-22 111.3 237 42.2
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 5.4e-22 109.0 75 76.0
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 5.4e-22 109.0 165 46.1
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-21 107.5 208 43.3
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 1.6e-21 107.5 208 43.3
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.6e-21 107.5 98 64.3
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.6e-21 107.5 98 64.3
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 2.0e-21 107.1 240 39.6
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.7e-21 106.7 208 42.3
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 2.7e-21 106.7 227 37.4
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 2.7e-21 106.7 103 57.3
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 4.6e-21 105.9 220 39.1
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 4.3e-19 99.4 276 36.6
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 1.6e-18 97.4 100 56.0
COL.COLO4_03992 Corchorus olitorius HOM05D004123 ORTHO05D004768 4.7e-18 95.9 264 34.5
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 1.2e-16 91.3 216 38.9
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 5.8e-16 89.0 216 37.5
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 2.5e-11 73.6 230 35.2
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 5.6e-11 72.4 265 34.0
Dinv21080 Davidia involucrata HOM05D004123 ORTHO05D004768 1.2e-10 71.2 209 36.8
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.8e-10 70.1 66 57.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.6e-10 69.7 54 63.0
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 3.6e-10 69.7 54 63.0
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 1.4e-09 67.8 90 44.4
SalBow8G0756 Salvia bowleyana HOM05D004123 ORTHO05D004768 8.9e-09 65.1 214 34.1
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 1.5e-08 64.3 190 30.5
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.0e-08 63.9 67 49.3
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.0e-08 63.9 55 56.4
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 4.4e-08 62.8 200 32.0
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 5.8e-08 62.4 185 35.1
Nitab4.5_0000791g0080 Nicotiana tabacum HOM05D004123 ORTHO05D004768 1.3e-07 61.2 160 38.1
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.7e-07 60.8 208 28.8
Dinv31634 Davidia involucrata HOM05D004123 ORTHO05D004768 2.9e-07 60.1 149 36.9
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 4.9e-07 59.3 170 32.9
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 6.4e-07 58.9 146 34.9
DCAR_024520 Daucus carota HOM05D001250 ORTHO05D000627 3.2e-06 56.6 169 31.4
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 3.2e-06 56.6 168 32.1
Lalb_Chr01g0022461 Lupinus albus HOM05D000333 ORTHO05D000190 4.1e-06 56.2 110 33.6
SEGI_27536 Sequoiadendron giganteum HOM05D004123 ORTHO05D000239 4.1e-06 56.2 42 59.5
Nn3g16998 Nelumbo nucifera HOM05D001250 ORTHO05D000627 5.4e-06 55.8 104 37.5
BraA06t24033Z Brassica rapa HOM05D004123 ORTHO05D004768 9.2e-06 55.1 208 29.8
DCAR_026559 Daucus carota HOM05D001250 ORTHO05D000627 9.2e-06 55.1 86 34.9


User provided reference genes

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