Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.3e-163 578.9 316 100.0
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 6.1e-140 501.1 319 87.5
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 4.0e-139 498.4 316 87.3
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 1.5e-138 496.5 319 86.5
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.8e-137 491.5 318 86.2
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 8.3e-137 490.7 319 85.9
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.3e-131 472.6 319 83.4
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.2e-130 470.3 318 84.6
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.3e-129 466.8 310 86.5
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.4e-128 463.4 310 80.0
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-124 449.1 311 83.9
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.8e-124 449.1 311 83.9
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 3.6e-124 448.7 311 84.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 3.6e-124 448.7 311 84.9
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 3.5e-119 432.2 315 77.5
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.4e-115 420.2 315 79.7
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.5e-109 400.2 320 76.9
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.6e-109 398.3 312 76.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 9.9e-82 307.8 324 62.0
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 1.2e-71 274.2 298 61.4
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-67 261.2 304 58.6
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 1.5e-66 257.3 299 54.8
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.6e-66 256.5 298 57.0
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.3e-65 254.2 303 57.1
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.9e-64 250.4 297 53.2
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-64 250.0 302 54.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 2.5e-64 250.0 302 54.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 2.5e-64 250.0 302 54.6
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 3.2e-64 249.6 297 52.9
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 3.9e-62 242.7 301 55.8
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 3.7e-52 209.5 335 47.5
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 6.3e-52 208.8 302 43.4
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 8.2e-52 208.4 300 51.0
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.5e-50 204.1 335 49.3
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.0e-49 201.4 337 43.3
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 2.2e-49 200.3 332 45.8
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 6.5e-49 198.7 327 44.3
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 1.1e-48 198.0 357 45.1
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.9e-48 197.2 329 45.0
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.9e-48 197.2 339 44.0
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 3.0e-46 189.9 338 46.4
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.5e-45 186.8 328 41.5
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 7.4e-45 185.3 328 41.2
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 4.8e-44 182.6 332 39.5
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 8.2e-44 181.8 332 41.9
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.9e-41 173.3 321 39.6
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 2.5e-40 170.2 326 42.9
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 2.1e-39 167.2 316 41.8
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.6e-39 166.4 337 43.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 5.1e-38 162.5 321 40.8
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.7e-38 162.2 318 35.5
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.7e-37 159.1 328 42.1
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.3e-36 157.9 319 37.3
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 4.8e-36 156.0 317 36.0
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-35 154.1 326 39.6
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.8e-35 154.1 326 39.3
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 5.3e-35 152.5 317 37.9
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.2e-34 151.4 323 42.4
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.6e-34 150.2 317 34.1
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 5.9e-34 149.1 344 40.1
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 5.9e-34 149.1 333 33.3
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 5.9e-34 149.1 321 40.8
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.0e-33 148.3 330 41.2
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.0e-33 148.3 324 35.5
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.0e-33 146.0 328 40.5
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.0e-33 146.0 323 34.1
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 5.0e-33 146.0 325 31.4
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 8.5e-33 145.2 309 34.0
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.1e-32 144.8 332 41.6
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 1.9e-32 144.1 326 39.9
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 1.9e-32 144.1 334 34.4
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.5e-32 143.7 316 36.1
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 4.2e-32 142.9 330 42.1
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.5e-32 142.5 309 33.7
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 5.5e-32 142.5 321 35.8
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 7.2e-32 142.1 343 40.2
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 7.2e-32 142.1 323 39.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.1e-31 140.6 325 31.1
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 2.7e-31 140.2 336 40.2
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.7e-31 140.2 334 38.6
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.6e-31 139.8 336 39.9
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.7e-31 139.4 310 37.7
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 8.0e-31 138.7 340 36.2
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.0e-30 138.3 336 39.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.8e-30 137.5 340 38.5
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.3e-30 137.1 320 35.3
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 2.3e-30 137.1 336 39.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.0e-30 136.7 331 34.7
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 4.0e-30 136.3 340 32.6
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 8.8e-30 135.2 326 42.0
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.0e-29 134.0 317 41.0
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 3.3e-29 133.3 329 40.7
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 3.3e-29 133.3 325 43.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 4.4e-29 132.9 341 31.1
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 4.4e-29 132.9 322 41.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 5.7e-29 132.5 324 33.6
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 9.7e-29 131.7 320 33.1
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 1.3e-28 131.3 322 39.4
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 1.3e-28 131.3 307 41.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.1e-27 128.3 313 38.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 2.4e-27 127.1 326 37.7
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 9.1e-27 125.2 329 32.8
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.6e-26 124.4 304 40.1
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 2.0e-26 124.0 326 39.9
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 5.9e-26 122.5 323 31.9
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.7e-25 120.9 328 41.8
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.1e-24 118.2 305 33.1
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 1.9e-24 117.5 308 34.1
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.5e-24 115.9 282 36.9
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.6e-23 114.4 312 34.3
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 2.7e-23 113.6 198 40.9
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 3.0e-22 110.2 318 29.2
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.3e-20 104.8 313 32.9
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 3.7e-20 103.2 303 38.3
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 4.8e-20 102.8 326 28.8
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.4e-19 99.4 293 30.0
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 1.2e-18 98.2 187 38.5
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.6e-18 97.8 320 30.9
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 2.0e-18 97.4 210 34.8
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 2.7e-18 97.1 319 30.7
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.7e-18 95.5 319 32.3
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.0e-17 95.1 325 36.6
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.9e-17 93.6 321 27.4
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 2.9e-17 93.6 311 30.5
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.0e-17 92.8 285 31.6
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 5.0e-17 92.8 318 27.7
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 6.5e-17 92.4 194 34.0
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 8.5e-17 92.0 309 36.6
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 1.1e-16 91.7 322 29.8
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 4.2e-16 89.7 326 35.6
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 9.4e-16 88.6 282 30.1
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 2.7e-15 87.0 264 40.9
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 2.7e-15 87.0 305 30.2
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.2e-13 81.6 318 28.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.4e-13 79.7 260 31.2
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 2.2e-12 77.4 164 32.9
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.1e-11 75.1 263 38.8
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.1e-11 73.6 77 46.8
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.0e-10 70.9 167 32.3
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 4.5e-10 69.7 251 36.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 1.0e-09 68.6 305 23.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 2.3e-09 67.4 278 29.9
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.8e-09 66.6 189 37.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.6e-08 62.8 269 30.5
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 9.5e-08 62.0 287 28.2
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 4.0e-06 56.6 147 34.0


User provided reference genes

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