Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 4.8e-210 734.2 352 100.0
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 1.4e-177 626.3 340 90.0
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 1.0e-172 610.1 338 86.7
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 8.2e-170 600.5 338 86.1
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 8.2e-170 600.5 338 86.1
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 1.4e-169 599.7 338 85.8
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 9.1e-169 597.0 338 85.8
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 4.5e-168 594.7 338 84.9
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 7.7e-168 594.0 332 85.2
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 4.7e-165 584.7 338 84.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.2e-150 535.0 348 76.1
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 1.1e-132 477.2 267 85.4
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 3.1e-132 475.7 327 71.9
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 1.1e-124 450.7 342 66.1
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 1.8e-124 449.9 339 67.0
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 2.3e-124 449.5 336 65.2
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 2.6e-123 446.0 343 64.1
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 7.1e-121 438.0 341 65.4
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 1.2e-120 437.2 277 78.3
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 1.2e-120 437.2 342 62.3
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 3.5e-120 435.6 340 63.5
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.0e-119 434.1 345 62.9
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 1.7e-119 433.3 337 64.4
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 8.6e-119 431.0 336 63.7
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 3.3e-118 429.1 336 63.1
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 3.3e-118 429.1 347 60.8
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 3.3e-118 429.1 339 64.0
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 9.6e-118 427.6 336 63.1
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 1.2e-117 427.2 330 62.4
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 4.7e-117 425.2 340 61.8
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.4e-116 423.7 341 63.0
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 1.4e-116 423.7 340 60.9
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 2.4e-116 422.9 344 61.6
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 2.4e-116 422.9 338 62.1
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 3.1e-116 422.5 344 62.8
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 6.8e-116 421.4 334 61.1
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 8.9e-116 421.0 333 61.0
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.2e-115 420.6 336 62.2
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 1.5e-115 420.2 343 60.6
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 2.0e-115 419.9 343 60.6
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 2.6e-115 419.5 335 63.0
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 3.4e-115 419.1 352 61.6
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 4.4e-115 418.7 333 61.6
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 5.8e-115 418.3 340 60.9
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 5.8e-115 418.3 338 61.2
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 1.3e-114 417.2 345 61.4
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 2.2e-114 416.4 343 61.8
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 3.8e-114 415.6 340 60.6
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.4e-113 412.9 345 61.7
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 2.4e-113 412.9 338 60.4
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 9.3e-113 411.0 344 60.8
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 2.1e-112 409.8 345 60.9
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 4.6e-112 408.7 345 59.1
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 7.8e-112 407.9 344 60.2
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 1.3e-111 407.1 343 60.1
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.3e-111 407.1 344 60.2
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.7e-111 406.8 348 59.2
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 3.0e-111 406.0 333 61.0
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 3.6e-109 399.1 347 59.9
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 1.8e-108 396.7 333 59.8
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 3.1e-108 396.0 337 59.1
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 4.0e-108 395.6 345 60.3
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 5.3e-108 395.2 337 58.8
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 4.4e-107 392.1 348 56.9
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 2.2e-106 389.8 333 58.3
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 2.9e-106 389.4 332 57.5
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.8e-106 389.0 340 57.4
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 4.2e-105 385.6 338 58.6
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 5.4e-105 385.2 303 64.0
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 2.7e-104 382.9 391 51.2
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 3.5e-104 382.5 359 54.0
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 6.0e-104 381.7 420 50.0
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 2.3e-103 379.8 341 59.5
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.5e-102 377.1 344 58.4
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 3.1e-100 369.4 329 55.6
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 1.5e-99 367.1 360 53.9
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 2.2e-98 363.2 344 56.7
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 4.9e-98 362.1 337 55.5
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 7.9e-96 354.8 298 57.7
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.0e-95 352.8 315 58.1
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 8.7e-95 351.3 331 53.8
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 4.0e-92 342.4 223 78.0
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 1.0e-90 337.8 301 53.5
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.8e-90 335.9 362 52.5
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 8.4e-90 334.7 330 53.0
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 6.0e-88 328.6 234 66.7
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 8.7e-87 324.7 318 52.2
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.5e-86 323.9 280 58.9
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 4.3e-86 322.4 316 54.1
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.0e-83 313.5 367 45.5
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 3.8e-82 309.3 279 58.4
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 5.5e-81 305.4 316 50.3
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 1.6e-80 303.9 362 48.3
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 1.5e-75 287.3 199 69.8
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 7.9e-72 275.0 333 45.6
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 4.3e-70 269.2 159 78.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.1e-62 244.6 160 68.8
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 1.7e-58 230.7 226 55.3
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 9.4e-57 224.9 294 44.2
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-55 220.3 142 71.8
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.6e-51 207.6 112 84.8
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 3.8e-50 203.0 113 83.2
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 5.0e-50 202.6 126 72.2
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 8.8e-47 191.8 222 45.9
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.4e-46 189.9 150 60.0
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 5.4e-44 182.6 246 43.9
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 9.1e-44 181.8 128 61.7
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 3.8e-42 176.4 220 46.8
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 1.1e-41 174.9 194 44.3
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 5.5e-41 172.6 102 72.5
Migut.O00731 Erythranthe guttata HOM05D005922 ORTHO05D006934 8.8e-39 165.2 204 45.6
arahy.Tifrunner.gnm1.ann1.GW2J4P Arachis hypogaea HOM05D006503 ORTHO05D008116 4.1e-36 156.4 188 50.0
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 5.4e-36 156.0 93 77.4
VMungo0251G2725 Vigna mungo HOM05D005922 ORTHO05D006934 1.0e-34 151.8 178 46.6
Manes.18G025338 Manihot esculenta HOM05D005922 ORTHO05D006934 5.0e-34 149.4 85 81.2
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 9.5e-33 145.2 111 67.6
A02p14700 Brassica napus HOM05D005922 ORTHO05D006934 6.1e-32 142.5 172 49.4
BraA02t06537Z Brassica rapa HOM05D005922 ORTHO05D006934 6.1e-32 142.5 172 49.4
Zm00001eb399130 Zea mays HOM05D005922 ORTHO05D006934 1.8e-23 114.4 84 58.3
Oeu031680.1 Olea europaea HOM05D005922 ORTHO05D006934 4.0e-23 113.2 135 48.9
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 5.8e-22 109.4 212 33.0
arahy.Tifrunner.gnm1.ann1.B3UXS8 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.4e-21 105.9 63 74.6
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-18 97.4 102 46.1
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 2.3e-18 97.4 102 46.1
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.5e-17 94.7 138 40.6
Haze_10820 Corylus avellana HOM05D005922 ORTHO05D006934 2.5e-17 94.0 93 54.8
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 3.6e-16 90.1 135 40.0
BolC2t08514H Brassica oleracea HOM05D005922 ORTHO05D006934 4.7e-16 89.7 146 41.8
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 2.6e-14 84.0 50 70.0
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 4.4e-14 83.2 49 71.4
CDE11G0599 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 9.8e-14 82.0 93 45.2
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.9e-13 80.5 49 69.4
SEGI_24854 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 1.3e-10 71.6 163 36.8
Manes.17G089020 Manihot esculenta HOM05D005922 ORTHO05D006934 1.8e-07 61.2 74 50.0


User provided reference genes

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