Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 8.1e-205 716.8 362 100.0
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 3.3e-121 439.1 341 68.6
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 1.2e-118 430.6 345 64.9
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 2.6e-118 429.5 352 67.6
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 5.8e-118 428.3 358 66.5
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 6.2e-112 408.3 342 63.7
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.3e-109 400.6 355 65.6
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.3e-109 400.6 355 65.6
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 1.1e-108 397.5 346 61.0
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 2.2e-101 373.2 353 62.0
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.9e-93 346.3 328 56.7
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 1.6e-91 340.5 306 63.4
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 3.0e-90 336.3 355 53.5
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 1.4e-71 274.2 489 39.1
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.1e-63 246.1 494 35.4
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.1e-55 219.5 178 61.2
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 8.8e-34 148.7 370 29.5
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 3.3e-33 146.7 379 29.8
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 2.2e-32 144.1 373 30.6
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 6.3e-32 142.5 360 28.9
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 5.3e-31 139.4 339 30.1
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 2.0e-30 137.5 390 29.7
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 1.3e-29 134.8 374 28.6
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 1.7e-29 134.4 384 29.7
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 2.2e-29 134.0 435 26.2
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 6.5e-29 132.5 377 30.5
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 6.5e-29 132.5 377 30.5
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 7.2e-28 129.0 383 27.4
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 1.6e-27 127.9 377 30.0
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 1.8e-26 124.4 376 26.9
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 5.2e-26 122.9 406 25.6
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 8.8e-26 122.1 383 29.2
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 1.5e-25 121.3 363 28.4
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 5.7e-25 119.4 124 48.4
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 7.5e-25 119.0 409 25.7
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 2.8e-24 117.1 330 28.2
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 8.3e-24 115.5 418 25.6
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.4e-23 114.8 455 27.3
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 2.4e-23 114.0 124 47.6
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 3.1e-23 113.6 124 46.8
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 1.6e-22 111.3 148 44.6
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 4.5e-22 109.8 132 43.9
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 3.8e-21 106.7 136 44.1
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 5.0e-21 106.3 124 47.6
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 5.0e-21 106.3 124 46.8
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 8.6e-21 105.5 310 28.4
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.1e-20 105.1 124 44.4
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.5e-20 104.8 124 44.4
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 1.5e-20 104.8 127 45.7
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 7.2e-20 102.4 148 41.2
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 9.5e-20 102.1 127 45.7
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.6e-19 101.3 124 44.4
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 2.8e-19 100.5 127 44.9
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 3.6e-19 100.1 177 35.0
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 4.7e-19 99.8 125 43.2
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 4.7e-19 99.8 181 37.0
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.0e-18 98.6 124 41.9
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 3.0e-18 97.1 124 40.3
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 3.0e-18 97.1 346 25.7
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 5.2e-18 96.3 128 40.6
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-17 95.1 124 43.5
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.2e-17 95.1 125 41.6
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.5e-17 94.7 124 43.5
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.6e-17 94.0 124 42.7
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 5.7e-17 92.8 492 23.2
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.3e-16 91.7 101 48.5
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 1.3e-16 91.7 126 42.9
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.7e-16 91.3 140 37.1
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.2e-16 90.9 101 48.5
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.1e-15 88.6 124 38.7
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 1.1e-15 88.6 179 34.1
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 1.8e-15 87.8 392 25.3
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.1e-15 86.7 311 24.1
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 4.1e-15 86.7 310 24.2
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.0e-15 85.9 310 24.2
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 9.2e-15 85.5 123 40.7
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 9.2e-15 85.5 208 30.3
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 2.0e-14 84.3 130 40.8
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 3.5e-14 83.6 201 29.9
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 7.8e-14 82.4 124 39.5
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 7.8e-14 82.4 424 24.3
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.8e-14 82.4 128 39.1
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 7.8e-14 82.4 128 39.1
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.3e-13 81.6 124 37.9
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 1.3e-13 81.6 124 36.3
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.7e-13 81.3 128 38.3
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 2.9e-13 80.5 124 37.1
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 3.8e-13 80.1 126 39.7
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.8e-13 80.1 494 22.5
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 5.0e-13 79.7 135 37.0
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 5.0e-13 79.7 123 39.0
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 6.6e-13 79.3 135 39.3
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 6.6e-13 79.3 365 23.0
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 6.6e-13 79.3 124 39.5
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 8.6e-13 79.0 126 38.9
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 1.1e-12 78.6 127 41.7
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.1e-12 78.6 436 23.9
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 1.9e-12 77.8 325 25.2
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.5e-12 77.4 140 34.3
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 4.3e-12 76.6 124 36.3
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 4.3e-12 76.6 131 36.6
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 4.3e-12 76.6 127 37.0
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 5.6e-12 76.3 96 38.5
BcaB01g06386 Brassica carinata HOM05D010589 ORTHO05D001927 7.3e-12 75.9 111 40.5
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 9.5e-12 75.5 198 32.8
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.6e-11 74.7 123 37.4
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 2.1e-11 74.3 439 23.7
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 2.1e-11 74.3 129 40.3
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 2.8e-11 73.9 102 34.3
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 2.8e-11 73.9 114 36.8
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 8.0e-11 72.4 102 33.3
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.0e-10 72.0 72 43.1
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 1.0e-10 72.0 135 35.6
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 1.0e-10 72.0 123 35.0
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 1.0e-10 72.0 128 35.2
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.4e-10 71.6 72 43.1
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 1.4e-10 71.6 98 33.7
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 3.0e-10 70.5 88 37.5
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 4.0e-10 70.1 75 40.0
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 5.2e-10 69.7 124 37.9
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 5.2e-10 69.7 130 36.9
TWI74G0633 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 5.2e-10 69.7 91 39.6
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.2e-09 68.6 91 36.3
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 1.5e-09 68.2 101 41.6
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 1.5e-09 68.2 96 34.4
Nn1g07679 Nelumbo nucifera HOM05D002477 ORTHO05D001927 1.5e-09 68.2 72 41.7
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.5e-09 68.2 84 36.9
TAR626G0091 Trochodendron aralioides HOM05D002477 ORTHO05D001927 2.6e-09 67.4 88 37.5
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 4.4e-09 66.6 85 44.7
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 4.4e-09 66.6 88 36.4
SHI33652 Sapria himalayana HOM05D002477 ORTHO05D001927 7.5e-09 65.9 77 42.9
DCAR_010045 Daucus carota HOM05D002477 ORTHO05D001927 1.3e-08 65.1 69 43.5
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.3e-08 65.1 90 36.7
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 1.7e-08 64.7 71 42.3
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 1.7e-08 64.7 362 23.2
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 1.7e-08 64.7 71 40.8
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 2.2e-08 64.3 72 37.5
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 3.7e-08 63.5 103 38.8
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.7e-08 63.5 124 33.9
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 3.7e-08 63.5 145 31.7
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 3.7e-08 63.5 174 29.9
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 4.9e-08 63.2 86 34.9
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 4.9e-08 63.2 212 27.4
Dinv21332 Davidia involucrata HOM05D002477 ORTHO05D001927 6.4e-08 62.8 71 40.8
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 1.1e-07 62.0 139 32.4
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.1e-07 62.0 72 38.9
Peaxi162Scf00111g00528 Petunia axillaris HOM05D002477 ORTHO05D001927 1.1e-07 62.0 72 38.9
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 1.4e-07 61.6 74 39.2
Oeu052600.1 Olea europaea HOM05D002477 ORTHO05D001927 1.4e-07 61.6 74 41.9
vmacro09464 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 1.4e-07 61.6 72 40.3
AUR62037152 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.9e-07 61.2 94 36.2
Medtr3g082160 Medicago truncatula HOM05D002477 ORTHO05D001927 3.2e-07 60.5 84 41.7
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 5.4e-07 59.7 74 35.1
SGA_v2.0_scaffold70G23601 Striga asiatica HOM05D002477 ORTHO05D001927 5.4e-07 59.7 90 35.6
Rhsim04G0031500 Rhododendron simsii HOM05D002477 ORTHO05D001927 7.0e-07 59.3 87 39.1
TWI36G1687 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 9.2e-07 58.9 73 42.5
CSS0027860 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-06 58.5 72 37.5
CSS0049780 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-06 58.5 72 37.5
Gohir.D07G093300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.2e-06 58.5 95 34.7
Gorai.001G100000 Gossypium raimondii HOM05D002477 ORTHO05D001927 1.2e-06 58.5 95 34.7
MSTRG.15028 Avicennia marina HOM05D002477 ORTHO05D001927 1.6e-06 58.2 74 35.1
MSTRG.6732 Avicennia marina HOM05D002477 ORTHO05D001927 1.6e-06 58.2 88 36.4
AUR62025099 Chenopodium quinoa HOM05D002477 ORTHO05D001927 1.6e-06 58.2 100 33.0
Eucgr.K01371 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.6e-06 58.2 71 36.6
Migut.M00522 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.0e-06 57.8 86 33.7
Psat5g110680 Pisum sativum HOM05D002477 ORTHO05D001927 2.7e-06 57.4 82 37.8
GSVIVG01030142001 Vitis vinifera HOM05D002477 ORTHO05D001927 2.7e-06 57.4 166 24.1
Aa31sc156G30 Aethionema arabicum HOM05D002477 ORTHO05D001927 3.5e-06 57.0 74 35.1
Gohir.A07G088300 Gossypium hirsutum HOM05D002477 ORTHO05D001927 3.5e-06 57.0 95 34.7
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 3.5e-06 57.0 83 31.3
Duzib211G0533 Durio zibethinus HOM05D002477 ORTHO05D001927 4.6e-06 56.6 75 36.0
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 4.6e-06 56.6 124 32.3
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 4.6e-06 56.6 85 31.8
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 6.0e-06 56.2 125 31.2
Lsat_1_v5_gn_9_103221 Lactuca sativa HOM05D002477 ORTHO05D001927 6.0e-06 56.2 84 33.3


User provided reference genes

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