Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.9e-123 445.3 228 100.0
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 5.1e-120 434.5 228 95.6
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 4.3e-119 431.4 228 95.6
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 4.3e-119 431.4 226 96.5
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 9.5e-119 430.3 228 95.2
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.8e-118 428.7 228 94.7
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 4.7e-118 427.9 226 95.1
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-117 426.8 226 95.1
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 1.1e-117 426.8 226 95.1
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 1.8e-117 426.0 228 96.1
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 8.9e-117 423.7 224 95.1
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 7.6e-116 420.6 227 94.3
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 1.7e-115 419.5 227 94.7
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 2.2e-115 419.1 227 94.7
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 8.4e-115 417.2 227 94.3
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 4.0e-109 398.3 228 86.4
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-108 396.7 228 86.0
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 3.4e-108 395.2 228 86.0
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 8.4e-107 390.6 228 85.1
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.4e-106 389.8 228 84.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.4e-106 389.8 223 85.7
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 2.4e-106 389.0 223 85.7
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-105 386.7 206 94.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.5e-105 385.2 221 86.0
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 1.9e-103 379.4 209 92.8
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 1.9e-103 379.4 209 92.8
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 5.6e-103 377.9 204 94.6
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.9e-100 367.1 228 78.5
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 1.7e-99 366.3 228 78.1
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 3.8e-99 365.2 225 81.3
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 1.9e-98 362.8 228 77.6
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-98 362.1 228 76.8
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 3.2e-98 362.1 228 77.2
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 1.6e-97 359.8 228 78.1
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 2.1e-97 359.4 228 75.9
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.7e-97 359.0 205 85.9
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 3.0e-96 355.5 228 76.3
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 1.9e-95 352.8 230 74.8
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 3.3e-95 352.1 225 75.6
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 4.3e-95 351.7 204 84.8
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 4.3e-95 351.7 226 77.0
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 5.6e-95 351.3 223 76.2
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 75.7
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 7.4e-95 350.9 226 74.3
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.3e-94 350.1 226 76.1
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 1.6e-94 349.7 228 76.3
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 1.6e-94 349.7 230 75.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 2.1e-94 349.4 226 75.2
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.8e-94 349.0 226 73.9
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 2.8e-94 349.0 226 73.5
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 2.8e-94 349.0 226 76.1
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 3.7e-94 348.6 226 73.5
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 4.8e-94 348.2 223 75.3
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.8e-94 348.2 226 73.0
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 6.2e-94 347.8 228 75.9
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 6.2e-94 347.8 226 75.2
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 74.8
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 1.1e-93 347.1 226 74.3
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.1e-93 347.1 223 75.8
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 1.4e-93 346.7 226 72.1
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.4e-93 346.7 230 74.3
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 1.8e-93 346.3 224 76.3
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 2.4e-93 345.9 226 74.8
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 4.5e-92 341.7 225 74.7
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.5e-92 341.7 226 76.1
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 3.8e-91 338.6 228 72.8
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 4.9e-91 338.2 226 71.7
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.4e-91 337.8 218 75.2
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 6.4e-91 337.8 231 72.3
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 1.4e-90 336.7 228 72.4
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.9e-90 336.3 223 73.5
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 3.2e-90 335.5 228 71.1
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 5.5e-90 334.7 225 73.8
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 5.5e-90 334.7 216 76.9
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 2.7e-89 332.4 232 72.0
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 2.7e-89 332.4 225 74.2
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 2.7e-89 332.4 225 74.2
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 3.5e-89 332.0 222 73.9
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.6e-89 331.6 224 74.6
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 4.6e-89 331.6 225 73.8
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 7.9e-89 330.9 225 73.8
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 3.0e-88 328.9 225 73.3
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 1.5e-87 326.6 227 70.5
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 2.5e-87 325.9 225 72.9
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 2.5e-87 325.9 222 69.4
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 5.7e-87 324.7 232 70.3
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.7e-87 324.7 224 73.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 9.6e-87 323.9 242 69.8
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 9.6e-87 323.9 210 72.9
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 1.3e-86 323.6 217 73.7
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 1.3e-86 323.6 221 70.6
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 2.1e-86 322.8 224 72.3
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 2.1e-86 322.8 221 69.7
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 2.8e-86 322.4 218 71.6
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 4.8e-86 321.6 221 71.5
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.2e-86 320.9 217 71.0
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.1e-85 320.5 217 71.4
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.4e-85 320.1 217 71.9
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.8e-85 319.7 221 71.5
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 1.8e-85 319.7 224 71.4
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 2.4e-85 319.3 228 69.3
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 6.9e-85 317.8 228 68.4
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 1.5e-84 316.6 215 71.2
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-84 316.2 226 69.5
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.3e-83 313.5 226 69.0
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 1.7e-83 313.2 224 67.4
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 1.7e-83 313.2 224 67.4
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 2.9e-83 312.4 205 71.7
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 3.8e-83 312.0 224 69.6
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.5e-82 309.3 211 70.1
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 2.5e-82 309.3 224 68.8
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 2.5e-82 309.3 202 73.8
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 4.2e-82 308.5 204 75.0
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 5.5e-82 308.1 208 73.6
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 5.5e-82 308.1 204 70.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.7e-81 305.8 262 61.5
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 2.7e-81 305.8 227 66.1
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 1.8e-80 303.1 231 66.2
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 3.0e-80 302.4 230 67.8
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 1.1e-79 300.4 207 71.5
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 1.1e-79 300.4 205 73.2
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 2.2e-78 296.2 222 64.9
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 2.8e-78 295.8 203 71.9
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 8.5e-75 284.3 243 59.3
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 7.2e-74 281.2 211 63.0
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 1.2e-73 280.4 206 71.4
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.2e-73 280.4 202 68.3
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.7e-73 279.3 213 63.8
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 2.3e-72 276.2 198 69.7
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 7.4e-71 271.2 216 63.4
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 7.4e-71 271.2 194 70.6
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 7.4e-71 271.2 228 63.6
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 9.7e-71 270.8 186 73.1
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.1e-69 265.8 224 60.3
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 1.2e-68 263.8 175 73.1
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 1.2e-68 263.8 159 83.0
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.5e-68 263.5 221 62.4
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 2.0e-68 263.1 211 65.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 3.2e-66 255.8 183 78.1
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 2.7e-65 252.7 214 61.2
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 1.1e-63 247.3 224 55.8
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 9.7e-63 244.2 231 58.4
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 8.2e-62 241.1 225 57.8
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 9.1e-61 237.7 152 77.6
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 1.2e-60 237.3 160 73.8
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 7.7e-60 234.6 214 58.4
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 6.5e-59 231.5 180 66.7
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 1.0e-56 224.2 213 54.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.9e-56 222.2 221 54.8
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.1e-55 220.7 208 58.7
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 2.6e-55 219.5 214 54.2
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 1.3e-54 217.2 186 63.4
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 3.7e-54 215.7 222 52.3
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-52 210.7 226 53.1
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 9.4e-50 201.1 117 89.7
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.0e-48 197.6 219 58.9
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 1.2e-47 194.1 211 49.3
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 7.2e-42 174.9 104 81.7
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 7.2e-42 174.9 238 46.2
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 3.0e-40 169.5 119 79.8
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 7.7e-36 154.8 217 44.2
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 2.3e-35 153.3 241 40.7
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 5.0e-35 152.1 99 74.7
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 6.6e-35 151.8 111 64.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.9e-34 150.2 238 42.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.3e-27 126.7 123 56.1
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 9.5e-26 121.3 168 42.9
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.0e-24 117.9 78 73.1
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 7.0e-21 105.1 79 65.8
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 1.9e-18 97.1 83 61.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.2e-14 83.6 204 31.4
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 6.0e-12 75.5 73 50.7
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.5e-10 70.1 109 40.4
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 3.1e-08 63.2 40 62.5
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 5.8e-07 58.9 72 50.0
arahy.Tifrunner.gnm1.ann1.B18QXV Arachis hypogaea HOM05D003994 ORTHO05D086742 2.9e-06 56.6 77 50.6


User provided reference genes

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