Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22920 Schrenkiella parvula HOM05D007313 ORTHO05D005299 5.1e-28 127.1 67 100.0
BcaC08g46215 Brassica carinata HOM05D007313 ORTHO05D005299 3.1e-25 117.9 67 91.0
BolC6t39221H Brassica oleracea HOM05D007313 ORTHO05D005299 3.1e-25 117.9 67 91.0
BcaB03g15149 Brassica carinata HOM05D007313 ORTHO05D005299 1.2e-24 115.9 67 91.0
A07p32280 Brassica napus HOM05D007313 ORTHO05D005299 1.5e-24 115.5 67 89.6
BraA07t30853Z Brassica rapa HOM05D007313 ORTHO05D005299 1.5e-24 115.5 67 89.6
BcaB05g24323 Brassica carinata HOM05D007313 ORTHO05D005299 3.4e-24 114.4 67 88.1
BcaC08g46017 Brassica carinata HOM05D007313 ORTHO05D005299 5.8e-24 113.6 67 88.1
C06p38120 Brassica napus HOM05D007313 ORTHO05D005299 5.8e-24 113.6 67 88.1
BolC6t38909H Brassica oleracea HOM05D007313 ORTHO05D005299 5.8e-24 113.6 67 88.1
BraA07t31073Z Brassica rapa HOM05D007313 ORTHO05D005299 5.8e-24 113.6 67 88.1
A02p14560 Brassica napus HOM05D007313 ORTHO05D005299 9.9e-24 112.8 67 88.1
BraA02t06526Z Brassica rapa HOM05D007313 ORTHO05D005299 9.9e-24 112.8 67 88.1
A07p34460 Brassica napus HOM05D007313 ORTHO05D005299 2.2e-23 111.7 67 86.6
Thhalv10019740m.g Eutrema salsugineum HOM05D007313 ORTHO05D005299 2.2e-23 111.7 67 86.6
BcaC03g14888 Brassica carinata HOM05D007313 ORTHO05D005299 2.9e-23 111.3 67 85.1
C02p23620 Brassica napus HOM05D007313 ORTHO05D005299 2.9e-23 111.3 67 85.1
BolC2t08492H Brassica oleracea HOM05D007313 ORTHO05D005299 2.9e-23 111.3 67 85.1
AT1G67920 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 4.9e-23 110.5 68 88.2
AL2G26720 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 1.1e-22 109.4 68 86.8
BcaB03g15385 Brassica carinata HOM05D007313 ORTHO05D005299 1.1e-22 109.4 68 85.3
Carub.0002s1441 Capsella rubella HOM05D007313 ORTHO05D005299 4.2e-22 107.5 68 86.8
CARHR060560 Cardamine hirsuta HOM05D007313 ORTHO05D005299 1.2e-21 105.9 68 85.3
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 4.2e-14 80.9 72 68.1
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 4.6e-13 77.4 54 77.8
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 4.6e-13 77.4 54 77.8
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 4.6e-13 77.4 54 77.8
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 6.0e-13 77.0 63 66.7
BcaB03g12049 Brassica carinata HOM05D007313 ORTHO05D005299 7.9e-13 76.6 74 64.9
AL1G40310 Arabidopsis lyrata HOM05D007313 ORTHO05D005299 2.3e-12 75.1 74 66.2
COL.COLO4_16580 Corchorus olitorius HOM05D007313 ORTHO05D005299 2.3e-12 75.1 75 62.7
Sp1g23170 Schrenkiella parvula HOM05D007313 ORTHO05D005299 3.0e-12 74.7 73 63.0
Carub.0001s2549 Capsella rubella HOM05D007313 ORTHO05D005299 6.7e-12 73.6 73 63.0
Aa31LG7G9440 Aethionema arabicum HOM05D007313 ORTHO05D005299 8.7e-12 73.2 71 66.2
Gohir.A01G147300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.5e-11 72.4 63 65.1
Gohir.D01G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.5e-11 72.4 63 65.1
Gorai.002G172500 Gossypium raimondii HOM05D007313 ORTHO05D005299 1.5e-11 72.4 63 65.1
Thecc.02G291900 Theobroma cacao HOM05D007313 ORTHO05D005299 1.5e-11 72.4 59 69.5
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 3.3e-11 71.2 68 61.8
CARHR026470 Cardamine hirsuta HOM05D007313 ORTHO05D005299 3.3e-11 71.2 73 61.6
AT1G24600 Arabidopsis thaliana HOM05D007313 ORTHO05D005299 7.4e-11 70.1 73 61.6
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 7.4e-11 70.1 66 59.1
A08p26710 Brassica napus HOM05D007313 ORTHO05D005299 1.6e-10 68.9 74 60.8
BraA08t34617Z Brassica rapa HOM05D007313 ORTHO05D005299 1.6e-10 68.9 74 60.8
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 3.7e-10 67.8 53 71.7
Manes.17G083600 Manihot esculenta HOM05D007313 ORTHO05D005299 3.7e-10 67.8 55 67.3
THA.LOC104825566 Tarenaya hassleriana HOM05D007313 ORTHO05D005299 3.7e-10 67.8 65 60.0
Ciclev10017248m.g Citrus clementina HOM05D007313 ORTHO05D005299 8.2e-10 66.6 54 66.7
Potri.008G134100 Populus trichocarpa HOM05D007313 ORTHO05D005299 1.8e-09 65.5 71 56.3
BcaB03g14014 Brassica carinata HOM05D007313 ORTHO05D005299 4.0e-09 64.3 74 59.5
Cfa015015 Carpinus fangiana HOM05D007313 ORTHO05D005299 4.0e-09 64.3 74 56.8
Manes.15G133700 Manihot esculenta HOM05D007313 ORTHO05D005299 4.0e-09 64.3 71 57.7
A07p12350 Brassica napus HOM05D007313 ORTHO05D005299 5.3e-09 63.9 74 59.5
BraA07t29016Z Brassica rapa HOM05D007313 ORTHO05D005299 5.3e-09 63.9 74 59.5
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 6.9e-09 63.5 57 63.2
Potri.010G107200 Populus trichocarpa HOM05D007313 ORTHO05D005299 1.5e-08 62.4 76 52.6
Cpa.g.sc2.206 Carica papaya HOM05D007313 ORTHO05D005299 2.0e-08 62.0 61 65.6
QL03p035637 Quercus lobata HOM05D007313 ORTHO05D005299 2.0e-08 62.0 52 65.4
BcaC06g35248 Brassica carinata HOM05D007313 ORTHO05D005299 2.6e-08 61.6 70 60.0
C07p18250 Brassica napus HOM05D007313 ORTHO05D005299 2.6e-08 61.6 70 60.0
BolC7t42335H Brassica oleracea HOM05D007313 ORTHO05D005299 2.6e-08 61.6 70 60.0
CANSAT01G0361 Cannabis sativa HOM05D007313 ORTHO05D005299 4.5e-08 60.8 60 63.3
Sabra08G0102600 Salix brachista HOM05D007313 ORTHO05D005299 7.6e-08 60.1 68 54.4
DCAR_023578 Daucus carota HOM05D007313 ORTHO05D005299 2.2e-07 58.5 53 62.3
C05p25550 Brassica napus HOM05D007313 ORTHO05D005299 2.9e-07 58.2 71 56.3
BolC5t31282H Brassica oleracea HOM05D007313 ORTHO05D005299 2.9e-07 58.2 71 56.3
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.9e-07 58.2 59 59.3
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 3.8e-07 57.8 59 57.6
Sabra10G0078300 Salix brachista HOM05D007313 ORTHO05D005299 6.5e-07 57.0 67 52.2
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 8.4e-07 56.6 74 52.7
BcaC05g26505 Brassica carinata HOM05D007313 ORTHO05D005299 1.1e-06 56.2 71 54.9
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.1e-06 56.2 75 50.7
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.1e-06 56.2 74 52.7
Prupe.1G332700 Prunus persica HOM05D007313 ORTHO05D005299 1.9e-06 55.5 66 56.1
DCAR_026801 Daucus carota HOM05D007313 ORTHO05D005299 2.5e-06 55.1 77 53.2
SalBow2G1257 Salvia bowleyana HOM05D007313 ORTHO05D005299 2.5e-06 55.1 69 53.6
Sopen04g003130 Solanum pennellii HOM05D007313 ORTHO05D005299 4.2e-06 54.3 64 54.7
PGSC0003DMG400029516 Solanum tuberosum HOM05D007313 ORTHO05D005299 4.2e-06 54.3 68 51.5
Haze_10890 Corylus avellana HOM05D007313 ORTHO05D005299 7.1e-06 53.5 65 55.4
MD16G1019400 Malus domestica HOM05D007313 ORTHO05D005299 7.1e-06 53.5 68 52.9
Solyc04g007990.1 Solanum lycopersicum HOM05D007313 ORTHO05D005299 7.1e-06 53.5 63 55.6
Medtr8g105190 Medicago truncatula HOM05D007313 ORTHO05D005299 9.3e-06 53.1 68 51.5


User provided reference genes

Program Settings