Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22850 Schrenkiella parvula HOM05D006816 ORTHO05D008666 0.0e+00 1150.6 622 100.0
Thhalv10018280m.g Eutrema salsugineum HOM05D006816 ORTHO05D008666 5.9e-304 1047.0 626 90.3
C06p38240 Brassica napus HOM05D006816 ORTHO05D008666 7.2e-302 1040.0 622 90.4
BcaB03g15378 Brassica carinata HOM05D006816 ORTHO05D008666 2.1e-301 1038.5 625 91.0
BolC6t38923H Brassica oleracea HOM05D006816 ORTHO05D008666 5.1e-300 1033.9 624 90.7
BcaC08g46032 Brassica carinata HOM05D006816 ORTHO05D008666 2.2e-298 1028.5 625 89.3
AT1G67840 Arabidopsis thaliana HOM05D006816 ORTHO05D008666 6.3e-298 1026.9 623 91.3
A07p32350 Brassica napus HOM05D006816 ORTHO05D008666 2.4e-297 1025.0 625 90.4
BraA07t30858Z Brassica rapa HOM05D006816 ORTHO05D008666 1.3e-295 1019.2 626 89.9
CARHR060480 Cardamine hirsuta HOM05D006816 ORTHO05D008666 2.5e-294 1015.0 622 89.4
AL2G26590 Arabidopsis lyrata HOM05D006816 ORTHO05D008666 7.2e-294 1013.4 623 90.7
Carub.0002s1430 Capsella rubella HOM05D006816 ORTHO05D008666 8.0e-293 1010.0 630 89.5
Aa31sc755G30 Aethionema arabicum HOM05D006816 ORTHO05D008666 1.0e-271 939.9 623 80.6
THA.LOC104825556 Tarenaya hassleriana HOM05D006816 ORTHO05D008666 1.6e-240 836.3 625 74.4
Cpa.g.sc33.36 Carica papaya HOM05D006816 ORTHO05D008666 7.9e-208 727.6 632 64.2
TAR622G0126 Trochodendron aralioides HOM05D006816 ORTHO05D008666 2.9e-194 682.6 566 65.5
Dinv15216 Davidia involucrata HOM05D006816 ORTHO05D008666 1.9e-193 679.9 640 61.4
Ciclev10030964m.g Citrus clementina HOM05D006816 ORTHO05D008666 5.1e-191 671.8 636 61.3
TWI36G0164 Tripterygium wilfordii HOM05D006816 ORTHO05D008666 6.7e-191 671.4 641 60.2
Gohir.A03G133700 Gossypium hirsutum HOM05D006816 ORTHO05D008666 2.0e-190 669.8 553 67.3
GSVIVG01000542001 Vitis vinifera HOM05D006816 ORTHO05D008666 6.9e-188 661.4 648 59.9
Gohir.D02G158100 Gossypium hirsutum HOM05D006816 ORTHO05D008666 9.1e-188 661.0 574 64.6
Gorai.005G177300 Gossypium raimondii HOM05D006816 ORTHO05D008666 9.1e-188 661.0 574 64.6
FAN22G0176 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.3e-186 657.1 618 61.0
Eucgr.H02486 Eucalyptus grandis HOM05D006816 ORTHO05D008666 3.2e-185 652.5 566 63.3
MD13G1099700 Malus domestica HOM05D006816 ORTHO05D008666 7.2e-185 651.4 620 60.8
QL03p057598 Quercus lobata HOM05D006816 ORTHO05D008666 1.2e-184 650.6 574 63.1
FAN17G1412 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.6e-184 650.2 537 66.3
Ah.02g130220 Amaranthus hybridus HOM05D006816 ORTHO05D008666 4.4e-182 642.1 637 59.5
COL.COLO4_23463 Corchorus olitorius HOM05D006816 ORTHO05D008666 9.7e-182 641.0 662 58.2
Manes.13G022900 Manihot esculenta HOM05D006816 ORTHO05D008666 2.4e-180 636.3 659 57.1
Haze_12261 Corylus avellana HOM05D006816 ORTHO05D008666 7.0e-180 634.8 705 55.2
Lj3C1059T10 Lonicera japonica HOM05D006816 ORTHO05D008666 5.9e-179 631.7 541 63.8
Hund06034 Selenicereus undatus HOM05D006816 ORTHO05D008666 3.8e-178 629.0 571 60.4
Glyma.05G174600 Glycine max HOM05D006816 ORTHO05D008666 6.5e-178 628.2 543 64.6
CsaV3_5G031010 Cucumis sativus L. HOM05D006816 ORTHO05D008666 1.5e-177 627.1 562 61.0
Atru.chr11.2152 Acer truncatum HOM05D006816 ORTHO05D008666 8.0e-176 621.3 620 57.1
HanXRQChr17g0569531 Helianthus annuus HOM05D006816 ORTHO05D008666 1.8e-175 620.2 530 62.6
VMungo0251G0196 Vigna mungo HOM05D006816 ORTHO05D008666 2.3e-175 619.8 543 63.5
MELO3C011940.2 Cucumis melo HOM05D006816 ORTHO05D008666 4.4e-174 615.5 573 60.0
Oeu057544.1 Olea europaea HOM05D006816 ORTHO05D008666 4.4e-174 615.5 640 55.9
AUR62024254 Chenopodium quinoa HOM05D006816 ORTHO05D008666 1.3e-173 614.0 602 58.0
Phvul.002G259600 Phaseolus vulgaris HOM05D006816 ORTHO05D008666 6.3e-173 611.7 543 62.4
Sed0004203 Sechium edule HOM05D006816 ORTHO05D008666 1.8e-172 610.1 564 58.5
PSO063G6228 Papaver somniferum HOM05D006816 ORTHO05D008666 5.3e-172 608.6 549 60.8
EL10Ac6g13857 Beta vulgaris HOM05D006816 ORTHO05D008666 7.0e-172 608.2 620 56.3
Lalb_Chr07g0185401 Lupinus albus HOM05D006816 ORTHO05D008666 9.1e-172 607.8 543 61.5
FvH4_4g25720 Fragaria vesca HOM05D006816 ORTHO05D008666 1.6e-171 607.1 618 56.8
PSO754G0080 Papaver somniferum HOM05D006816 ORTHO05D008666 3.5e-171 605.9 549 60.8
Solyc05g013670.3 Solanum lycopersicum HOM05D006816 ORTHO05D008666 3.5e-171 605.9 566 59.4
Lsat_1_v5_gn_4_4020 Lactuca sativa HOM05D006816 ORTHO05D008666 4.5e-171 605.5 535 61.7
Sabra10G0021100 Salix brachista HOM05D006816 ORTHO05D008666 5.9e-171 605.1 575 60.9
Sopen05g008580 Solanum pennellii HOM05D006816 ORTHO05D008666 7.7e-171 604.7 630 56.2
Migut.K00611 Erythranthe guttata HOM05D006816 ORTHO05D008666 1.0e-170 604.4 538 60.8
PGSC0003DMG400018598 Solanum tuberosum HOM05D006816 ORTHO05D008666 2.5e-169 599.7 630 56.3
ECA234G3219 Erigeron canadensis HOM05D006816 ORTHO05D008666 4.2e-169 599.0 527 60.5
Nitab4.5_0006963g0030 Nicotiana tabacum HOM05D006816 ORTHO05D008666 7.2e-169 598.2 565 60.5
TPR.G6183 Trifolium pratense HOM05D006816 ORTHO05D008666 9.4e-169 597.8 546 60.8
Nn4g22582 Nelumbo nucifera HOM05D006816 ORTHO05D008666 3.6e-168 595.9 568 59.3
Medtr8g089810 Medicago truncatula HOM05D006816 ORTHO05D008666 6.1e-168 595.1 548 59.1
SalBow2G0630 Salvia bowleyana HOM05D006816 ORTHO05D008666 8.0e-168 594.7 587 57.4
Ca_17778_v3 Cicer arietinum L. HOM05D006816 ORTHO05D008666 1.4e-167 594.0 546 61.0
FAN12G1622 Fragaria x ananassa HOM05D006816 ORTHO05D008666 1.8e-167 593.6 537 61.8
Aqoxy5G03738 Aquilegia oxysepala HOM05D006816 ORTHO05D008666 9.8e-166 587.8 525 62.3
Lj4g0008868 Lotus japonicus HOM05D006816 ORTHO05D008666 1.7e-165 587.0 628 56.4
ClCG05G025840 Citrullus lanatus HOM05D006816 ORTHO05D008666 2.8e-165 586.3 570 58.6
CANSAT01G2021 Cannabis sativa HOM05D006816 ORTHO05D008666 2.4e-164 583.2 612 56.5
RcHm_v2.0_Chr4g0433151 Rosa chinensis HOM05D006816 ORTHO05D008666 2.0e-163 580.1 619 55.4
AUR62005487 Chenopodium quinoa HOM05D006816 ORTHO05D008666 5.9e-163 578.6 641 53.2
PGR119G0117 Punica granatum HOM05D006816 ORTHO05D008666 8.6e-162 574.7 647 54.7
Psat7g059360 Pisum sativum HOM05D006816 ORTHO05D008666 1.5e-161 573.9 545 59.1
Cc11_g15850 Coffea canephora HOM05D006816 ORTHO05D008666 4.7e-160 568.9 619 55.7
CSS0008455 Camellia sinensis var. sinensis HOM05D006816 ORTHO05D008666 3.4e-158 562.8 543 59.3
Peaxi162Scf00128g00318 Petunia axillaris HOM05D006816 ORTHO05D008666 4.4e-158 562.4 567 56.4
unitig_699.g19932 Utricularia gibba HOM05D006816 ORTHO05D008666 3.7e-157 559.3 528 58.9
Duzib251G0886 Durio zibethinus HOM05D006816 ORTHO05D008666 1.2e-155 554.3 553 58.0
vmacro01121 Vaccinium macrocarpon HOM05D006816 ORTHO05D008666 1.7e-154 550.4 562 57.3
ATR0824G245 Amborella trichopoda HOM05D006816 ORTHO05D008666 2.9e-149 533.1 578 52.8
Zm00001eb319330 Zea mays HOM05D006816 ORTHO05D008666 5.2e-143 512.3 589 51.6
Actinidia01356 Actinidia chinensis HOM05D006816 ORTHO05D008666 2.3e-138 496.9 481 59.9
CAN.G436.5 Capsicum annuum HOM05D006816 ORTHO05D008666 5.0e-138 495.7 467 58.9
Nitab4.5_0000524g0100 Nicotiana tabacum HOM05D006816 ORTHO05D008666 8.3e-133 478.4 491 58.0
Sc11g0000930 Simmondsia chinensis HOM05D006816 ORTHO05D008666 5.4e-132 475.7 474 57.4
DCAR_031163 Daucus carota HOM05D006816 ORTHO05D008666 1.9e-124 450.7 541 50.8
Thecc.02G261900 Theobroma cacao HOM05D006816 ORTHO05D008666 1.4e-119 434.5 474 56.3
SEGI_18687 Sequoiadendron giganteum HOM05D006816 ORTHO05D008666 2.7e-115 420.2 536 45.3
SGA_v2.0_scaffold100G29566 Striga asiatica HOM05D006816 ORTHO05D008666 2.4e-111 407.1 593 43.7
FAN07G2231 Fragaria x ananassa HOM05D006816 ORTHO05D008666 6.7e-106 389.0 461 52.9
Potri.010G047500 Populus trichocarpa HOM05D006816 ORTHO05D008666 3.7e-104 383.3 468 51.7
CiPaw.05G180700 Carya illinoinensis HOM05D006816 ORTHO05D008666 8.4e-101 372.1 340 62.6
HPP92_023364 Vanilla planifolia HOM05D006816 ORTHO05D008666 1.3e-98 364.8 316 61.7
Prupe.1G246300 Prunus persica HOM05D006816 ORTHO05D008666 1.1e-97 361.7 466 49.4
arahy.Tifrunner.gnm1.ann1.2HFS1Z Arachis hypogaea HOM05D006816 ORTHO05D008666 7.4e-97 359.0 381 58.0
arahy.Tifrunner.gnm1.ann1.CH9KSW Arachis hypogaea HOM05D006816 ORTHO05D008666 3.7e-96 356.7 381 57.7
CDE02G3152 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 3.0e-82 310.5 524 40.8
Os12g0292900 Oryza sativa ssp. japonica HOM05D006816 ORTHO05D008666 8.8e-82 308.9 392 49.5
Mapoly0088s0066 Marchantia polymorpha HOM05D006816 ORTHO05D008666 5.9e-70 269.6 569 35.3
MBI17_g43191_MAGBIO Magnolia biondii HOM05D006816 ORTHO05D008666 2.4e-55 221.1 245 53.5
Glyma.08G131850 Glycine max HOM05D006816 ORTHO05D008666 1.6e-54 218.4 166 69.9
Pp3c11_24610 Physcomitrium patens HOM05D006816 ORTHO05D008666 1.8e-47 194.9 527 31.5
Psat3g153160 Pisum sativum HOM05D006816 ORTHO05D008517 1.0e-34 152.5 115 64.3
Psat3g153200 Pisum sativum HOM05D006816 ORTHO05D008666 4.0e-34 150.6 115 63.5
COL.COLO4_35805 Corchorus olitorius HOM05D006816 ORTHO05D008666 4.4e-33 147.1 97 71.1
HPP92_023363 Vanilla planifolia HOM05D006816 ORTHO05D008666 2.0e-30 138.3 147 52.4
Psat2g121560 Pisum sativum HOM05D006816 ORTHO05D008666 1.9e-28 131.7 99 64.6
Psat4g077560 Pisum sativum HOM05D006816 ORTHO05D008666 9.5e-28 129.4 95 67.4
CDE09G0157 Ceratophyllum demersum HOM05D006816 ORTHO05D008666 2.3e-26 124.8 162 44.4
CBR_g52389 Chara braunii HOM05D006816 ORTHO05D008666 4.0e-26 124.0 361 27.7
Actinidia08129 Actinidia chinensis HOM05D006816 ORTHO05D008666 6.2e-19 100.1 119 48.7
Actinidia01355 Actinidia chinensis HOM05D006816 ORTHO05D008666 8.9e-18 96.3 59 76.3
FvH4_4g35670 Fragaria vesca HOM05D006816 ORTHO05D008666 1.4e-15 89.0 89 58.4
FAN22G1065 Fragaria x ananassa HOM05D000247 ORTHO05D000288 1.0e-13 82.8 89 51.7
CBR_g52391 Chara braunii HOM05D006816 ORTHO05D008666 6.6e-13 80.1 191 31.4


User provided reference genes

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