Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1676.0 838 100.0
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1611.7 838 95.5
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1602.0 838 94.7
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1593.9 838 94.0
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1592.4 839 94.2
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 0.0e+00 1583.9 845 93.6
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1583.5 845 93.5
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1580.1 845 93.1
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1576.2 839 93.1
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1570.1 839 93.0
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1560.8 838 91.8
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1466.1 838 85.6
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1464.1 766 94.5
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 0.0e+00 1449.9 825 88.1
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1368.6 837 80.2
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1368.2 838 80.4
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1357.4 840 79.6
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1352.0 838 78.9
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1351.3 838 79.2
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1350.1 838 78.6
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1347.0 838 79.1
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1346.6 838 78.6
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1341.6 838 78.9
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1338.6 838 78.8
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 838 78.9
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1337.8 838 79.0
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 838 77.6
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1335.9 840 79.0
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1333.9 838 78.8
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1333.2 868 77.2
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1330.1 838 78.3
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1328.9 840 78.5
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1327.4 839 78.2
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1326.6 838 78.0
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1325.1 838 77.7
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1319.3 839 77.8
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1317.4 839 77.9
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1315.8 838 76.8
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 870 75.3
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1315.4 858 77.2
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 838 77.6
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1315.1 838 77.6
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 838 77.2
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1314.7 826 78.3
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1312.7 838 77.2
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1311.2 838 77.0
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1310.8 838 77.8
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1306.2 839 77.0
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1305.8 838 77.4
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1303.1 839 77.1
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1300.0 839 77.4
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1298.9 839 76.6
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 830 77.7
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1297.7 838 75.7
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1296.6 838 76.8
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1294.3 838 76.3
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1293.5 838 75.3
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1290.0 838 76.5
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1288.5 841 75.3
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1286.9 838 76.0
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1286.6 844 76.1
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1285.8 838 76.0
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1283.5 845 75.6
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1283.1 838 75.5
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1281.5 838 76.5
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1280.0 838 75.8
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1277.7 838 74.7
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1277.3 840 75.4
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1276.2 915 71.4
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1275.4 911 71.5
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1272.7 843 74.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1271.9 911 71.4
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1270.8 967 68.3
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1270.0 904 71.3
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1268.8 838 75.8
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1268.1 838 75.5
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1267.7 838 74.6
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1266.1 838 74.6
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1258.8 858 73.8
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1256.5 851 74.5
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1234.9 764 79.2
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 0.0e+00 1224.9 819 75.5
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1216.4 781 75.5
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1213.0 842 72.8
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1211.1 867 70.9
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1203.3 826 72.8
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1198.7 751 79.0
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 0.0e+00 1194.1 838 72.2
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1192.9 776 76.4
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1187.9 842 72.1
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 0.0e+00 1185.6 780 75.4
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 0.0e+00 1181.0 839 72.0
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 0.0e+00 1167.5 788 74.1
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 0.0e+00 1161.4 839 68.8
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 0.0e+00 1151.0 858 66.9
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 0.0e+00 1134.8 805 68.7
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 0.0e+00 1120.9 754 73.5
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 0.0e+00 1115.9 844 66.5
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 0.0e+00 1100.9 696 77.9
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 0.0e+00 1092.0 693 77.6
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 0.0e+00 1080.5 839 65.2
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 5.7e-312 1073.9 838 66.6
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 4.0e-311 1071.2 852 63.8
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 5.7e-310 1067.4 854 63.5
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 5.7e-310 1067.4 839 63.9
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 9.1e-284 980.3 654 74.2
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 1.1e-260 903.7 845 59.1
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 7.8e-251 870.9 642 69.8
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 4.7e-232 808.5 542 72.5
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 2.1e-211 740.0 513 71.5
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 1.1e-201 707.6 418 83.3
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 2.8e-168 596.7 329 89.1
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 6.2e-123 446.0 254 87.4
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 1.9e-116 424.5 300 74.3
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 4.4e-113 413.3 285 73.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.9e-103 381.3 307 60.3
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.9e-92 344.7 194 85.6
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 7.6e-89 332.8 263 66.9
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 1.6e-86 325.1 388 50.0
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.8e-66 258.5 275 54.2
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 1.9e-63 248.4 182 70.9
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.0e-53 214.5 139 77.0
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 4.5e-49 200.7 140 70.0
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 3.7e-43 181.0 117 78.6
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 2.3e-32 145.2 94 73.4
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 2.9e-32 144.8 83 79.5
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 8.0e-30 136.7 177 42.4
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 2.6e-28 131.7 82 81.7
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-27 127.9 76 78.9
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.0e-24 119.8 85 63.5
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 4.7e-22 110.9 74 75.7
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 2.0e-20 105.5 84 61.9
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.3e-19 102.8 81 61.7
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 2.8e-14 85.1 62 61.3
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 1.4e-13 82.8 105 51.4
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 9.2e-10 70.1 42 83.3
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 1.9e-07 62.4 50 60.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-07 61.2 41 78.0


User provided reference genes

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