Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22130 Schrenkiella parvula HOM05D001568 ORTHO05D004404 2.9e-28 128.3 85 100.0
Thhalv10019331m.g Eutrema salsugineum HOM05D001568 ORTHO05D004404 3.5e-26 121.3 85 94.1
AL2G25700 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.3e-25 119.4 85 91.8
Carub.0002s1347 Capsella rubella HOM05D001568 ORTHO05D004404 1.3e-23 112.8 89 88.8
A07p33830 Brassica napus HOM05D001568 ORTHO05D004404 6.2e-23 110.5 85 88.2
C06p43090 Brassica napus HOM05D001568 ORTHO05D004404 6.2e-23 110.5 85 89.4
BolC6t39129H Brassica oleracea HOM05D001568 ORTHO05D004404 6.2e-23 110.5 85 87.1
BraA07t31009Z Brassica rapa HOM05D001568 ORTHO05D004404 6.2e-23 110.5 85 88.2
BolC2t08417H Brassica oleracea HOM05D001568 ORTHO05D004404 1.7e-20 102.4 85 85.9
C02p22640 Brassica napus HOM05D001568 ORTHO05D004404 2.2e-20 102.1 85 85.9
A02p14040 Brassica napus HOM05D001568 ORTHO05D004404 9.3e-19 96.7 87 83.9
BraA02t06465Z Brassica rapa HOM05D001568 ORTHO05D004404 9.3e-19 96.7 87 83.9
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.7e-18 95.1 85 64.7
Aa31LG2G3570 Aethionema arabicum HOM05D001568 ORTHO05D004404 3.7e-15 84.7 80 78.8
CARHR059650 Cardamine hirsuta HOM05D001568 ORTHO05D004404 1.4e-14 82.8 85 74.1
Sed0014020 Sechium edule HOM05D001568 ORTHO05D004404 3.8e-12 74.7 79 53.2
Cc07_g04900 Coffea canephora HOM05D001568 ORTHO05D004404 4.2e-11 71.2 79 54.4
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.4e-11 70.1 84 50.0
Sed0003724 Sechium edule HOM05D001568 ORTHO05D004404 1.6e-10 69.3 85 44.7
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.7e-10 68.6 84 48.8
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.7e-10 68.6 84 48.8
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 1.0e-09 66.6 81 50.6
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 1.8e-09 65.9 81 49.4
Oeu032864.1 Olea europaea HOM05D001568 ORTHO05D004404 1.8e-09 65.9 77 46.8
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 2.3e-09 65.5 81 49.4
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 2.3e-09 65.5 84 47.6
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 3.9e-09 64.7 81 44.4
arahy.Tifrunner.gnm1.ann1.IG7GQE Arachis hypogaea HOM05D001568 ORTHO05D004404 3.9e-09 64.7 41 70.7
CAN.G497.17 Capsicum annuum HOM05D001568 ORTHO05D004404 5.1e-09 64.3 81 44.4
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 5.1e-09 64.3 84 45.2
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.1e-09 64.3 81 46.9
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.1e-09 64.3 84 47.6
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 5.1e-09 64.3 84 47.6
Solyc02g089660.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.1e-09 64.3 81 44.4
PGSC0003DMG400010048 Solanum tuberosum HOM05D001568 ORTHO05D004404 5.1e-09 64.3 81 44.4
arahy.Tifrunner.gnm1.ann1.R2NHXZ Arachis hypogaea HOM05D001568 ORTHO05D004404 6.7e-09 63.9 41 70.7
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 6.7e-09 63.9 81 45.7
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 8.8e-09 63.5 80 50.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 8.8e-09 63.5 84 46.4
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.8e-09 63.5 84 45.2
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 8.8e-09 63.5 81 46.9
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 8.8e-09 63.5 81 46.9
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 8.8e-09 63.5 81 45.7
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.8e-09 63.5 84 44.0
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 8.8e-09 63.5 84 44.0
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 8.8e-09 63.5 84 46.4
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 1.1e-08 63.2 81 46.9
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.1e-08 63.2 84 48.8
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.1e-08 63.2 84 45.2
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.1e-08 63.2 86 47.7
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 1.5e-08 62.8 41 73.2
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.9e-08 62.4 41 68.3
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 2.5e-08 62.0 41 70.7
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 3.3e-08 61.6 81 44.4
HanXRQChr10g0283701 Helianthus annuus HOM05D001568 ORTHO05D004404 3.3e-08 61.6 85 44.7
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 4.3e-08 61.2 81 45.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 5.7e-08 60.8 81 48.1
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 7.4e-08 60.5 41 65.9
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 9.7e-08 60.1 81 46.9
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 9.7e-08 60.1 83 45.8
Nn4g23635 Nelumbo nucifera HOM05D001568 ORTHO05D004404 1.3e-07 59.7 81 45.7
DCAR_010979 Daucus carota HOM05D001568 ORTHO05D004404 2.2e-07 58.9 85 43.5
DCAR_010982 Daucus carota HOM05D001568 ORTHO05D004404 2.2e-07 58.9 85 43.5
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 2.8e-07 58.5 80 43.8
ECA246G2394 Erigeron canadensis HOM05D001568 ORTHO05D004404 4.8e-07 57.8 82 42.7
Lsat_1_v5_gn_3_94821 Lactuca sativa HOM05D001568 ORTHO05D004404 6.3e-07 57.4 78 43.6
Lsat_1_v5_gn_4_175441 Lactuca sativa HOM05D001568 ORTHO05D004404 6.3e-07 57.4 70 48.6
Potri.004G105800 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.2e-07 57.0 40 60.0
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 8.2e-07 57.0 40 62.5
PGSC0003DMG400019661 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.1e-06 56.6 41 63.4
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.8e-06 55.8 38 63.2
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 1.8e-06 55.8 84 45.2
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 3.1e-06 55.1 84 38.1
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.1e-06 55.1 72 41.7
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 6.9e-06 53.9 76 46.1


User provided reference genes

Program Settings