Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 0.0e+00 4234.5 2245 100.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 0.0e+00 3716.8 2224 89.2
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3715.6 2224 89.3
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 0.0e+00 3701.8 2223 88.7
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 0.0e+00 3699.1 2224 88.8
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 0.0e+00 3681.7 2331 85.1
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 0.0e+00 3678.6 2248 87.4
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 0.0e+00 3628.2 2226 86.8
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 0.0e+00 3565.0 2240 85.4
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 0.0e+00 3395.5 2183 83.1
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 0.0e+00 3041.9 2185 74.0
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 0.0e+00 2552.3 2226 62.0
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 0.0e+00 2526.9 2208 62.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 0.0e+00 2525.4 2185 61.7
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 0.0e+00 2525.0 2195 62.1
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2522.7 2218 61.5
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 0.0e+00 2509.9 2208 61.9
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 0.0e+00 2509.6 2164 62.4
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 0.0e+00 2500.3 2094 63.6
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 0.0e+00 2499.5 2171 62.4
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 0.0e+00 2489.9 2198 62.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 0.0e+00 2489.1 2223 60.8
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2452.2 2197 61.4
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2450.2 2246 59.6
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 0.0e+00 2444.1 2211 61.5
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 0.0e+00 2439.1 2161 61.9
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 0.0e+00 2429.8 2245 59.6
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 0.0e+00 2426.7 2255 59.0
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2407.5 1898 66.9
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 0.0e+00 2407.1 1999 63.6
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2405.2 2159 60.8
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 0.0e+00 2371.7 2217 58.9
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 0.0e+00 2365.9 2192 59.0
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 0.0e+00 2347.4 2174 59.0
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 0.0e+00 2341.6 2152 59.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 0.0e+00 2337.0 2217 58.3
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2335.5 2215 59.3
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 0.0e+00 2335.1 2166 58.8
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2325.1 2172 58.6
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 0.0e+00 2313.5 2228 57.5
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 0.0e+00 2306.6 2239 57.5
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 0.0e+00 2305.4 2173 58.1
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 0.0e+00 2295.8 2212 58.8
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 2281.9 2215 56.5
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 0.0e+00 2275.4 2167 58.1
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 0.0e+00 2274.6 2213 57.4
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 0.0e+00 2272.3 2007 60.4
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 0.0e+00 2269.6 2063 59.4
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 0.0e+00 2238.4 2089 58.4
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2231.4 2083 58.0
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 0.0e+00 2231.4 2083 58.0
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 0.0e+00 2221.8 2218 55.8
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 0.0e+00 2217.6 2196 57.2
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 0.0e+00 2207.2 2070 58.4
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 0.0e+00 2200.2 1998 59.6
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 0.0e+00 2197.9 2265 55.5
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 0.0e+00 2197.5 2582 51.4
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2191.0 2228 54.8
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 2189.1 1632 69.2
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 0.0e+00 2137.1 2250 53.6
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 0.0e+00 2124.4 2001 58.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 2120.9 2069 56.8
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 0.0e+00 2107.4 2341 52.7
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 0.0e+00 2099.3 2200 54.2
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 0.0e+00 2088.9 1990 57.0
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 0.0e+00 2085.8 2194 55.6
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 0.0e+00 2063.9 1449 72.8
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 0.0e+00 2062.0 2019 56.6
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 0.0e+00 1995.7 1998 55.3
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 0.0e+00 1937.9 1836 57.2
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 0.0e+00 1937.9 2203 52.2
Nitab4.5_0002288g0020 Nicotiana tabacum HOM05D003845 ORTHO05D004161 0.0e+00 1914.0 2188 51.5
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 0.0e+00 1866.7 3050 40.8
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 0.0e+00 1818.5 2214 48.2
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 0.0e+00 1793.9 2137 49.5
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 0.0e+00 1681.8 1763 54.8
SHI17842 Sapria himalayana HOM05D003845 ORTHO05D004161 0.0e+00 1654.8 2021 47.8
ClCG11G005440 Citrullus lanatus HOM05D003845 ORTHO05D004161 0.0e+00 1612.0 1779 52.6
Psat3g206280 Pisum sativum HOM05D003845 ORTHO05D004161 0.0e+00 1593.6 1641 53.4
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 0.0e+00 1583.5 1129 72.0
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 0.0e+00 1576.6 1757 51.2
Mapoly0101s0033 Marchantia polymorpha HOM05D003845 ORTHO05D004161 0.0e+00 1491.9 2044 43.5
CARHR059600 Cardamine hirsuta HOM05D003845 ORTHO05D004161 0.0e+00 1447.2 833 90.3
BcaB03g15908 Brassica carinata HOM05D003845 ORTHO05D004161 0.0e+00 1394.8 1066 74.4
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 0.0e+00 1394.4 2160 40.9
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 0.0e+00 1336.6 1347 53.9
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 0.0e+00 1297.0 2004 41.4
SMO239G0031 Selaginella moellendorffii HOM05D003845 ORTHO05D004161 0.0e+00 1253.8 2023 40.0
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 0.0e+00 1182.2 918 66.4
CBR_g31193 Chara braunii HOM05D003845 ORTHO05D004161 0.0e+00 1172.5 1520 44.8
SEGI_31548 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 0.0e+00 1154.4 1586 44.1
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 0.0e+00 1115.9 1030 58.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 0.0e+00 1094.7 2198 35.4
Ca_04077_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 4.0e-310 1069.3 1464 45.8
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 9.9e-277 958.4 834 59.7
Ciclev10010942m.g Citrus clementina HOM05D003845 ORTHO05D004161 3.0e-273 946.8 1101 51.2
unitig_899.g14511 Utricularia gibba HOM05D003845 ORTHO05D004161 3.0e-233 813.9 1232 42.1
Lj1g0022983 Lotus japonicus HOM05D003845 ORTHO05D004161 7.0e-222 776.2 1055 45.0
Cpa.g.sc179.5 Carica papaya HOM05D003845 ORTHO05D004161 4.9e-199 700.3 965 45.5
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 6.4e-199 699.9 723 54.6
Hund16135 Selenicereus undatus HOM05D003845 ORTHO05D004161 5.6e-195 686.8 1029 42.3
DCAR_017205 Daucus carota HOM05D003845 ORTHO05D004161 2.2e-191 674.9 726 51.1
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 6.8e-185 653.3 578 60.7
CSS0018407 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 3.0e-180 637.9 442 74.9
Ca_03194_v3 Cicer arietinum L. HOM05D003845 ORTHO05D003700 2.8e-178 631.3 484 67.4
Ciclev10011943m.g Citrus clementina HOM05D003845 ORTHO05D004161 5.1e-164 583.9 386 75.4
Lj2C445T15 Lonicera japonica HOM05D003845 ORTHO05D004161 4.3e-155 554.3 432 67.6
ClCG11G005430 Citrullus lanatus HOM05D003845 ORTHO05D004161 6.9e-153 547.0 377 72.9
SEGI_40473 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 3.1e-129 468.4 403 59.8
Cpa.g.sc179.9 Carica papaya HOM05D003845 ORTHO05D004161 3.3e-115 421.8 811 37.2
ATR0564G289 Amborella trichopoda HOM05D003845 ORTHO05D004161 1.4e-108 399.8 292 69.9
FAN09G0938 Fragaria x ananassa HOM05D003845 ORTHO05D004161 1.7e-106 392.9 264 75.0
Rhsim09G0080700 Rhododendron simsii HOM05D003845 ORTHO05D004161 5.2e-100 371.3 364 59.1
PRCOL_00002157 Prasinoderma coloniale HOM05D003845 ORTHO05D004161 3.1e-97 362.1 1577 26.2
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.2e-90 339.3 301 57.5
SEGI_32880 Sequoiadendron giganteum HOM05D003845 ORTHO05D004161 2.4e-89 335.9 892 31.5
Glyma.08G364200 Glycine max HOM05D003845 ORTHO05D004161 3.5e-88 332.0 575 37.6
Cre16.g684100 Chlamydomonas reinhardtii HOM05D003845 ORTHO05D004161 1.3e-79 303.5 1772 23.5
RcHm_v2.0_Chr2g0163391 Rosa chinensis HOM05D003845 ORTHO05D004161 1.7e-79 303.1 287 59.2
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 3.2e-65 255.8 312 50.0
CAN.G625.3 Capsicum annuum HOM05D003845 ORTHO05D004161 5.4e-65 255.0 160 81.2
Haze_14141 Corylus avellana HOM05D003845 ORTHO05D004161 9.2e-65 254.2 424 41.5
COL.COLO4_05467 Corchorus olitorius HOM05D003845 ORTHO05D004161 1.4e-60 240.4 590 32.0
CARHR059590 Cardamine hirsuta HOM05D003845 ORTHO05D004161 1.2e-56 227.3 304 59.5
CSS0008855 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 2.3e-55 223.0 168 69.0
CSS0040864 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 5.6e-54 218.4 132 81.1
Lsat_1_v5_gn_3_65920 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-49 204.1 180 63.9
Lsat_1_v5_gn_4_179241 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-49 204.1 180 63.9
Lsat_1_v5_gn_5_95120 Lactuca sativa HOM05D000020 ORTHO05D000543 1.1e-49 204.1 180 63.9
Lsat_1_v5_gn_8_43240 Lactuca sativa HOM05D003845 ORTHO05D004161 1.1e-49 204.1 180 63.9
QL02p051676 Quercus lobata HOM05D003845 ORTHO05D004161 1.6e-48 200.3 125 82.4
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 2.7e-48 199.5 157 68.2
CiPaw.04G041000 Carya illinoinensis HOM05D003845 ORTHO05D004161 4.0e-44 185.7 358 39.4
Actinidia15875 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.0e-43 183.3 122 76.2
Lsat_1_v5_gn_5_70501 Lactuca sativa HOM05D003845 ORTHO05D004161 4.3e-38 165.6 129 69.0
Cpa.g.sc179.6 Carica papaya HOM05D003845 ORTHO05D004161 4.5e-35 155.6 139 61.9
Cfa024622 Carpinus fangiana HOM05D003845 ORTHO05D004161 9.3e-33 147.9 618 24.6
CDE02G2490 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 3.9e-31 142.5 222 38.7
Lj6g0007936 Lotus japonicus HOM05D003845 ORTHO05D004161 4.1e-28 132.5 487 28.1
Lsat_1_v5_gn_8_163720 Lactuca sativa HOM05D003845 ORTHO05D004161 1.4e-25 124.0 116 61.2
Actinidia15877 Actinidia chinensis HOM05D003845 ORTHO05D004161 9.3e-25 121.3 393 35.9
CSS0031203 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-22 114.4 70 80.0
Gorai.001G080600 Gossypium raimondii HOM05D003845 ORTHO05D004161 9.7e-22 111.3 110 51.8
MCO14G535 Micromonas commoda HOM05D003845 ORTHO05D004161 1.6e-21 110.5 483 26.7
Cpa.g.c36099 Carica papaya HOM05D003845 ORTHO05D004161 1.1e-20 107.8 75 72.0
Manes.07G074028 Manihot esculenta HOM05D003845 ORTHO05D004161 1.5e-19 104.0 87 63.2
Cpa.g.sc3785.2 Carica papaya HOM05D003845 ORTHO05D004161 3.4e-19 102.8 75 72.0
RcHm_v2.0_Chr2g0166401 Rosa chinensis HOM05D003845 ORTHO05D004161 3.2e-17 96.3 149 38.9
Dinv33934 Davidia involucrata HOM05D003845 ORTHO05D004161 7.9e-16 91.7 252 36.5
Actinidia20850 Actinidia chinensis HOM05D003845 ORTHO05D004161 1.8e-15 90.5 100 54.0
CAN.G178.11 Capsicum annuum HOM05D007284 ORTHO05D009303 3.0e-15 89.7 125 47.2
COL.COLO4_16180 Corchorus olitorius HOM05D003845 ORTHO05D004161 8.8e-15 88.2 56 82.1
arahy.Tifrunner.gnm1.ann1.395ZIT Arachis hypogaea HOM05D003845 ORTHO05D004161 2.0e-14 87.0 56 73.2
arahy.Tifrunner.gnm1.ann1.57NG5G Arachis hypogaea HOM05D003845 ORTHO05D004161 3.3e-14 86.3 53 77.4
CSS0027472 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 7.4e-14 85.1 53 75.5
Actinidia20836 Actinidia chinensis HOM05D004442 ORTHO05D002066 1.3e-13 84.3 70 64.3
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 1.7e-13 84.0 54 63.0
Cpa.g.sc179.7 Carica papaya HOM05D003845 ORTHO05D004161 4.8e-13 82.4 56 75.0
Lsat_1_v5_gn_8_150280 Lactuca sativa HOM05D001675 ORTHO05D004161 6.3e-13 82.0 61 57.4
Os06g0505100 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.4e-12 80.9 107 38.3
Actinidia13420 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.4e-12 80.1 62 64.5
EL10Ac8g19727 Beta vulgaris HOM05D003845 ORTHO05D004161 6.9e-12 78.6 53 75.5
RcHm_v2.0_Chr2g0123031 Rosa chinensis HOM05D003845 ORTHO05D004161 1.2e-11 77.8 67 59.7
Actinidia17348 Actinidia chinensis HOM05D003226 ORTHO05D015784 2.6e-11 76.6 56 66.1
Hund04285 Selenicereus undatus HOM05D003845 ORTHO05D004161 2.6e-11 76.6 66 59.1
Actinidia17345 Actinidia chinensis HOM05D003845 ORTHO05D004161 3.4e-11 76.3 54 68.5
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.1e-09 71.2 42 83.3
Pp3c9_4980 Physcomitrium patens HOM05D003845 ORTHO05D004161 1.1e-09 71.2 115 38.3
RcHm_v2.0_Chr2g0166391 Rosa chinensis HOM05D003845 ORTHO05D004161 2.5e-09 70.1 71 53.5
TPR.G40067 Trifolium pratense HOM05D003845 ORTHO05D004161 9.4e-09 68.2 51 66.7
EL10Ac9g21747 Beta vulgaris HOM05D000802 ORTHO05D001074 3.6e-08 66.2 44 77.3
Actinidia15876 Actinidia chinensis HOM05D003845 ORTHO05D004161 5.2e-07 62.4 60 46.7
arahy.Tifrunner.gnm1.ann1.MNN8Y6 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.1e-06 61.2 63 54.0
ClCG11G005420 Citrullus lanatus HOM05D003845 ORTHO05D004161 2.0e-06 60.5 50 62.0
Mapoly0010s0133 Marchantia polymorpha HOM05D003845 ORTHO05D004161 2.6e-06 60.1 109 34.9
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 3.3e-06 59.7 41 70.7


User provided reference genes

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