Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g21340 Schrenkiella parvula HOM05D007778 ORTHO05D009819 5.7e-101 370.9 189 100.0
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 1.7e-73 279.6 189 74.6
BcaB05g24166 Brassica carinata HOM05D007778 ORTHO05D009819 5.0e-73 278.1 179 81.0
AT2G01918 Arabidopsis thaliana HOM05D007778 ORTHO05D009819 1.5e-72 276.6 189 77.8
BcaC03g14741 Brassica carinata HOM05D007778 ORTHO05D009819 7.3e-72 274.2 189 73.5
Thhalv10019189m.g Eutrema salsugineum HOM05D007778 ORTHO05D009819 4.0e-70 268.5 189 74.6
Carub.0005s0093 Capsella rubella HOM05D007778 ORTHO05D009819 2.2e-68 262.7 190 74.7
AL5G11050 Arabidopsis lyrata HOM05D007778 ORTHO05D009819 5.4e-67 258.1 191 72.8
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 7.0e-67 257.7 185 71.9
BraA02t06417Z Brassica rapa HOM05D003087 ORTHO05D009819 7.0e-67 257.7 185 71.9
CARHR144520 Cardamine hirsuta HOM05D007778 ORTHO05D009819 4.6e-66 255.0 193 74.1
THA.LOC104823842 Tarenaya hassleriana HOM05D007778 ORTHO05D009819 3.4e-45 185.7 180 56.1
Aa31LG2G2990 Aethionema arabicum HOM05D007778 ORTHO05D009819 4.6e-34 148.7 192 50.0
Oeu032099.1 Olea europaea HOM05D007778 ORTHO05D009819 2.1e-26 123.2 153 47.1
Lsat_1_v5_gn_4_110701 Lactuca sativa HOM05D007778 ORTHO05D009819 3.3e-24 115.9 143 44.1
Actinidia04816 Actinidia chinensis HOM05D001693 ORTHO05D001588 5.6e-24 115.2 160 41.9
Nitab4.5_0001485g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 7.4e-24 114.8 112 49.1
Nitab4.5_0007160g0010 Nicotiana tabacum HOM05D007778 ORTHO05D009819 1.6e-23 113.6 112 49.1
Ah.03g133980 Amaranthus hybridus HOM05D007778 ORTHO05D009819 3.7e-23 112.5 123 47.2
HanXRQChr09g0270391 Helianthus annuus HOM05D007778 ORTHO05D009819 3.7e-23 112.5 112 51.8
TPR.G37414 Trifolium pratense HOM05D007778 ORTHO05D009819 4.8e-23 112.1 129 46.5
Thecc.04G114700 Theobroma cacao HOM05D007778 ORTHO05D009819 6.2e-23 111.7 110 49.1
Sabra17G0107900 Salix brachista HOM05D007778 ORTHO05D009819 1.1e-22 110.9 157 42.7
Duzib211G0615 Durio zibethinus HOM05D007778 ORTHO05D009819 1.4e-22 110.5 110 50.0
CDE05G2207 Ceratophyllum demersum HOM05D007778 ORTHO05D009819 2.4e-22 109.8 177 39.5
CAN.G1228.14 Capsicum annuum HOM05D007778 ORTHO05D009819 3.1e-22 109.4 111 45.9
MBI06_g15669_MAGBIO Magnolia biondii HOM05D007778 ORTHO05D009819 4.0e-22 109.0 183 36.1
Cpa.g.sc116.56 Carica papaya HOM05D007778 ORTHO05D009819 5.3e-22 108.6 105 52.4
arahy.Tifrunner.gnm1.ann1.0X1LIN Arachis hypogaea HOM05D007778 ORTHO05D009819 6.9e-22 108.2 172 37.8
AUR62037508 Chenopodium quinoa HOM05D007778 ORTHO05D009819 6.9e-22 108.2 112 48.2
ClCG01G008280 Citrullus lanatus HOM05D007778 ORTHO05D009819 6.9e-22 108.2 110 49.1
Atru.chr1.1920 Acer truncatum HOM05D007778 ORTHO05D009819 9.0e-22 107.8 122 45.1
COL.COLO4_05993 Corchorus olitorius HOM05D007778 ORTHO05D009819 9.0e-22 107.8 110 47.3
PGSC0003DMG400024679 Solanum tuberosum HOM05D007778 ORTHO05D009819 9.0e-22 107.8 186 38.2
arahy.Tifrunner.gnm1.ann1.U19ACF Arachis hypogaea HOM05D007778 ORTHO05D009819 1.2e-21 107.5 172 37.8
AUR62004744 Chenopodium quinoa HOM05D007778 ORTHO05D009819 1.2e-21 107.5 112 47.3
Haze_14055 Corylus avellana HOM05D007778 ORTHO05D009819 1.2e-21 107.5 110 49.1
Haze_14066 Corylus avellana HOM05D007778 ORTHO05D009819 1.2e-21 107.5 110 49.1
MELO3C025069.2 Cucumis melo HOM05D007778 ORTHO05D009819 1.2e-21 107.5 110 49.1
Rhsim08G0144800 Rhododendron simsii HOM05D007778 ORTHO05D009819 1.2e-21 107.5 153 39.9
CsaV3_5G020220 Cucumis sativus L. HOM05D007778 ORTHO05D009819 1.5e-21 107.1 110 48.2
Migut.D01632 Erythranthe guttata HOM05D007778 ORTHO05D009819 1.5e-21 107.1 177 37.3
Lalb_Chr15g0085401 Lupinus albus HOM05D007778 ORTHO05D009819 1.5e-21 107.1 128 43.8
Cc07_g09880 Coffea canephora HOM05D007778 ORTHO05D009819 3.4e-21 105.9 112 43.8
Os04g0523000 Oryza sativa ssp. japonica HOM05D007778 ORTHO05D009819 4.5e-21 105.5 123 47.2
Aqoxy3G04229 Aquilegia oxysepala HOM05D007778 ORTHO05D009819 5.8e-21 105.1 150 39.3
Dinv17427 Davidia involucrata HOM05D007778 ORTHO05D009819 5.8e-21 105.1 111 49.5
Gohir.D07G082800 Gossypium hirsutum HOM05D007778 ORTHO05D009819 5.8e-21 105.1 110 46.4
Gorai.001G088400 Gossypium raimondii HOM05D007778 ORTHO05D009819 5.8e-21 105.1 110 46.4
PSO782G0382 Papaver somniferum HOM05D007778 ORTHO05D009819 5.8e-21 105.1 112 49.1
Nn4g24886 Nelumbo nucifera HOM05D007778 ORTHO05D009819 7.6e-21 104.8 112 48.2
MD09G1282000 Malus domestica HOM05D007778 ORTHO05D009819 9.9e-21 104.4 130 43.1
Manes.01G118400 Manihot esculenta HOM05D007778 ORTHO05D009819 9.9e-21 104.4 109 47.7
Psat4g221240 Pisum sativum HOM05D007778 ORTHO05D009819 9.9e-21 104.4 151 41.1
Prupe.3G011900 Prunus persica HOM05D007778 ORTHO05D009819 9.9e-21 104.4 185 36.2
TWI74G0094 Tripterygium wilfordii HOM05D007778 ORTHO05D009819 9.9e-21 104.4 184 40.2
EL10Ac4g08900 Beta vulgaris HOM05D007778 ORTHO05D009819 1.7e-20 103.6 122 44.3
Gohir.A07G078000 Gossypium hirsutum HOM05D007778 ORTHO05D009819 1.7e-20 103.6 110 46.4
RcHm_v2.0_Chr3g0487781 Rosa chinensis HOM05D007778 ORTHO05D009819 1.7e-20 103.6 110 44.5
FAN28G0539 Fragaria x ananassa HOM05D007778 ORTHO05D009819 2.2e-20 103.2 130 40.8
VMungo0540G2068 Vigna mungo HOM05D007778 ORTHO05D009819 2.2e-20 103.2 151 41.7
Ciclev10012879m.g Citrus clementina HOM05D007778 ORTHO05D009819 3.8e-20 102.4 181 37.0
Glyma.11G204300 Glycine max HOM05D007778 ORTHO05D009819 6.4e-20 101.7 155 40.6
CSS0000221 Camellia sinensis var. sinensis HOM05D007778 ORTHO05D009819 8.4e-20 101.3 184 40.8
Zm00001eb077030 Zea mays HOM05D007778 ORTHO05D009819 8.4e-20 101.3 109 50.5
FvH4_1g27614 Fragaria vesca HOM05D007778 ORTHO05D009819 1.1e-19 100.9 192 34.9
PSO063G5463 Papaver somniferum HOM05D007778 ORTHO05D009819 1.4e-19 100.5 112 47.3
Glyma.18G046700 Glycine max HOM05D007778 ORTHO05D009819 3.2e-19 99.4 180 37.8
SalBow7G4718 Salvia bowleyana HOM05D007778 ORTHO05D009819 3.2e-19 99.4 142 39.4
Medtr3g064070 Medicago truncatula HOM05D007778 ORTHO05D009819 4.2e-19 99.0 181 38.7
Potri.017G129700 Populus trichocarpa HOM05D007778 ORTHO05D009819 4.2e-19 99.0 182 37.4
CANSAT78G1962 Cannabis sativa HOM05D007778 ORTHO05D009819 5.5e-19 98.6 109 46.8
PGR102G3280 Punica granatum HOM05D007778 ORTHO05D009819 5.5e-19 98.6 119 42.9
Phvul.006G084300 Phaseolus vulgaris HOM05D007778 ORTHO05D009819 9.3e-19 97.8 122 42.6
Lj6g0006010 Lotus japonicus HOM05D007778 ORTHO05D009819 1.6e-18 97.1 125 40.8
QL02p054670 Quercus lobata HOM05D007778 ORTHO05D009819 3.5e-18 95.9 109 45.9
FAN28G2555 Fragaria x ananassa HOM05D007778 ORTHO05D009819 7.9e-18 94.7 191 35.1
Lj5P133T80 Lonicera japonica HOM05D007778 ORTHO05D009819 1.3e-17 94.0 114 43.9
unitig_736.g22611 Utricularia gibba HOM05D007778 ORTHO05D009819 3.9e-17 92.4 123 40.7
GSVIVG01000799001 Vitis vinifera HOM05D007778 ORTHO05D009819 3.9e-17 92.4 74 60.8
Eucgr.C02546 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.1e-16 90.9 148 37.8
Eucgr.C02480 Eucalyptus grandis HOM05D007778 ORTHO05D009819 5.6e-16 88.6 139 37.4
FAN26G2882 Fragaria x ananassa HOM05D007778 ORTHO05D009819 5.6e-16 88.6 102 42.2
Sed0002702 Sechium edule HOM05D007778 ORTHO05D009819 8.4e-12 74.7 80 47.5
Eucgr.I00539 Eucalyptus grandis HOM05D007778 ORTHO05D009819 1.4e-11 73.9 164 35.4
CiPaw.03G008500 Carya illinoinensis HOM05D007778 ORTHO05D009819 3.5e-10 69.3 156 35.3
MD09G1282100 Malus domestica HOM05D007778 ORTHO05D009819 4.6e-10 68.9 99 39.4
Cfa008003 Carpinus fangiana HOM05D007778 ORTHO05D009819 7.9e-10 68.2 73 47.9
CDE02G0449 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 3.3e-08 62.8 104 31.7
ATR0618G409 Amborella trichopoda HOM05D007778 ORTHO05D009819 1.3e-07 60.8 157 33.8
HPP92_000863 Vanilla planifolia HOM05D004209 ORTHO05D004970 2.2e-07 60.1 97 32.0
CDE11G0355 Ceratophyllum demersum HOM05D004209 ORTHO05D004970 2.8e-07 59.7 104 29.8
Aqoxy4G02128 Aquilegia oxysepala HOM05D004209 ORTHO05D004970 4.8e-07 58.9 97 33.0
Aa31LG9G9260 Aethionema arabicum HOM05D004209 ORTHO05D004970 6.3e-07 58.5 102 32.4
AUR62014619 Chenopodium quinoa HOM05D004209 ORTHO05D004970 6.3e-07 58.5 110 30.0
AUR62044485 Chenopodium quinoa HOM05D004209 ORTHO05D004970 6.3e-07 58.5 110 30.0
Ciclev10016525m.g Citrus clementina HOM05D004209 ORTHO05D004970 6.3e-07 58.5 102 32.4
BcaB01g01890 Brassica carinata HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
BcaC04g21382 Brassica carinata HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
A09p25550 Brassica napus HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
C09p32460 Brassica napus HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
BraA09t38130Z Brassica rapa HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
Thhalv10028939m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
Sp6g03810 Schrenkiella parvula HOM05D004209 ORTHO05D004970 8.2e-07 58.2 102 31.4
SEGI_28796 Sequoiadendron giganteum HOM05D004209 ORTHO05D004970 1.1e-06 57.8 110 30.0
BolC9t56091H Brassica oleracea HOM05D004209 ORTHO05D004970 1.4e-06 57.4 98 31.6
AL6G48780 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 1.8e-06 57.0 102 30.4
unitig_21.g20230 Utricularia gibba HOM05D004209 ORTHO05D004970 1.8e-06 57.0 94 33.0
BcaNung03829 Brassica carinata HOM05D004209 ORTHO05D004970 2.4e-06 56.6 102 28.4
Thhalv10026172m.g Eutrema salsugineum HOM05D004209 ORTHO05D004970 2.4e-06 56.6 102 29.4
Aa31LG6G3270 Aethionema arabicum HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 29.4
AL7G32830 Arabidopsis lyrata HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
BcaC09g51238 Brassica carinata HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 30.4
C01p15220 Brassica napus HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 30.4
BolC1t01473H Brassica oleracea HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 30.4
Carub.0007s2015 Capsella rubella HOM05D004209 ORTHO05D004970 3.1e-06 56.2 97 29.9
Sp7g19360 Schrenkiella parvula HOM05D004209 ORTHO05D004970 3.1e-06 56.2 102 30.4
AT4G05180 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 4.1e-06 55.8 102 29.4
COL.COLO4_31686 Corchorus olitorius HOM05D004209 ORTHO05D004970 5.3e-06 55.5 102 29.4
Pp3c5_4110 Physcomitrium patens HOM05D004209 ORTHO05D004970 5.3e-06 55.5 102 30.4
SGA_v2.0_scaffold7G03893 Striga asiatica HOM05D004209 ORTHO05D004970 5.3e-06 55.5 102 29.4
AT4G21280 Arabidopsis thaliana HOM05D004209 ORTHO05D004970 6.9e-06 55.1 97 28.9
A01p12630 Brassica napus HOM05D004209 ORTHO05D004970 6.9e-06 55.1 102 29.4
BraA01t01206Z Brassica rapa HOM05D004209 ORTHO05D004970 6.9e-06 55.1 102 29.4
CARHR227860 Cardamine hirsuta HOM05D004209 ORTHO05D004970 6.9e-06 55.1 97 29.9
Ca_14052_v3 Cicer arietinum L. HOM05D004209 ORTHO05D004970 6.9e-06 55.1 102 32.4
SMO171G0022 Selaginella moellendorffii HOM05D004209 ORTHO05D004970 6.9e-06 55.1 116 31.0
THA.LOC104812569 Tarenaya hassleriana HOM05D004209 ORTHO05D004970 6.9e-06 55.1 104 28.8
unitig_744.g24528 Utricularia gibba HOM05D004209 ORTHO05D004970 6.9e-06 55.1 86 36.0
Rhsim02G0115100 Rhododendron simsii HOM05D004209 ORTHO05D004970 9.0e-06 54.7 102 30.4


User provided reference genes

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