Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 1.5e-81 306.2 163 100.0
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 9.7e-57 223.8 208 66.8
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.2e-51 206.8 176 69.9
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 3.6e-51 205.3 197 65.5
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 8.0e-51 204.1 197 65.0
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 8.0e-51 204.1 197 65.0
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 3.9e-50 201.8 187 65.2
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-49 199.9 197 64.5
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-49 199.9 197 64.5
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 1.5e-49 199.9 197 64.5
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 2.0e-49 199.5 197 64.0
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-49 199.5 197 64.0
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 2.0e-49 199.5 197 64.0
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 3.3e-49 198.7 197 64.5
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 9.7e-49 197.2 208 60.6
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 9.7e-49 197.2 208 60.6
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-48 196.4 197 63.5
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-48 196.4 197 63.5
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-48 196.4 197 63.5
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.7e-48 196.4 197 63.5
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 3.7e-48 195.3 208 61.5
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 3.7e-48 195.3 208 61.5
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 3.7e-48 195.3 208 61.5
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 6.3e-48 194.5 197 63.5
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 6.3e-48 194.5 197 63.5
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.4e-47 193.4 199 64.8
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.4e-47 193.4 199 64.8
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.4e-47 193.4 208 59.6
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 1.8e-47 193.0 197 62.9
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-47 192.6 196 63.3
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 2.4e-47 192.6 196 63.3
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 3.1e-47 192.2 197 62.9
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-47 191.4 197 62.9
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-47 191.4 197 62.9
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 5.3e-47 191.4 197 62.9
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 2.6e-46 189.1 208 57.7
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.1e-43 179.5 208 56.7
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 2.7e-43 179.1 200 57.5
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.7e-43 179.1 197 58.9
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 3.6e-43 178.7 136 74.3
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.0e-42 177.2 137 75.2
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.8e-42 176.4 183 61.7
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.2e-41 173.7 187 60.4
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.7e-40 169.9 199 57.8
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 2.8e-40 169.1 197 56.9
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 1.2e-38 163.7 136 71.3
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 1.3e-37 160.2 129 71.3
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 3.8e-37 158.7 176 59.7
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 1.0e-34 150.6 188 54.3
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 8.3e-32 141.0 129 67.4
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 2.4e-31 139.4 129 65.9
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 2.7e-30 136.0 131 64.1
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.5e-28 130.2 124 66.1
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 7.5e-25 117.9 173 48.6
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 2.2e-24 116.3 100 69.0
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.2e-23 112.5 176 49.4
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.0e-23 111.3 127 55.9
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 9.2e-23 110.9 127 57.5
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.8e-19 99.4 57 86.0
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 4.7e-19 98.6 103 61.2
Lsat_1_v5_gn_5_95761 Lactuca sativa HOM05D002069 ORTHO05D009794 5.2e-18 95.1 58 79.3
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 6.0e-14 81.6 72 68.1
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.0e-14 81.6 163 42.9
Thhalv10029192m.g Eutrema salsugineum HOM05D003517 ORTHO05D009794 1.0e-13 80.9 56 78.6
TPR.G39738 Trifolium pratense HOM05D003517 ORTHO05D009794 1.3e-13 80.5 56 80.4
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 2.3e-10 69.7 89 57.3
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 2.3e-10 69.7 38 86.8
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 6.8e-10 68.2 88 56.8
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 2.6e-09 66.2 95 52.6
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 3.4e-09 65.9 120 46.7
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.4e-08 61.6 154 39.0
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 1.1e-07 60.8 58 69.0
CiPaw.05G081600 Carya illinoinensis HOM05D003517 ORTHO05D009794 3.2e-07 59.3 93 48.4


User provided reference genes

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