Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g19730 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.2e-118 429.1 236 100.0
BolC2t08254H Brassica oleracea HOM05D009566 ORTHO05D007629 1.1e-82 310.5 235 77.4
BcaC03g14675 Brassica carinata HOM05D009566 ORTHO05D007629 1.5e-82 310.1 234 76.9
BraA02t06358Z Brassica rapa HOM05D009566 ORTHO05D007629 1.2e-79 300.4 236 76.3
C02p21140 Brassica napus HOM05D009566 ORTHO05D007629 5.3e-72 275.0 205 78.0
BcaB05g24082 Brassica carinata HOM05D009566 ORTHO05D007629 2.0e-71 273.1 237 70.5
A02p13020 Brassica napus HOM05D009566 ORTHO05D007629 2.2e-65 253.1 207 75.4
Carub.0002s1043 Capsella rubella HOM05D009566 ORTHO05D007629 2.8e-65 252.7 250 68.4
AL2G19730 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.1e-64 250.8 242 65.7
AT1G65090 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 3.1e-64 249.2 215 70.7
CARHR056580 Cardamine hirsuta HOM05D009566 ORTHO05D007629 1.9e-61 240.0 236 67.4
Thhalv10022484m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 7.2e-53 211.5 206 64.6
THA.LOC104821804 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 1.1e-32 144.4 279 43.4
THA.LOC104823805 Tarenaya hassleriana HOM05D009566 ORTHO05D007629 3.0e-30 136.3 290 41.7
Aa31LG2G2280 Aethionema arabicum HOM05D009566 ORTHO05D007629 7.3e-29 131.7 231 44.6
CARHR216660 Cardamine hirsuta HOM05D009566 ORTHO05D007629 6.2e-28 128.6 201 44.8
Thhalv10005424m.g Eutrema salsugineum HOM05D009566 ORTHO05D007629 1.5e-26 124.0 215 46.0
Carub.0007s3177 Capsella rubella HOM05D009566 ORTHO05D007629 3.0e-22 109.8 202 42.6
AT5G36100 Arabidopsis thaliana HOM05D009566 ORTHO05D007629 6.6e-22 108.6 214 41.1
Aa31LG9G17880 Aethionema arabicum HOM05D009566 ORTHO05D007629 3.1e-19 99.8 119 51.3
AL7G45070 Arabidopsis lyrata HOM05D009566 ORTHO05D007629 1.2e-18 97.8 144 46.5
Sp7g06100 Schrenkiella parvula HOM05D009566 ORTHO05D007629 2.0e-18 97.1 229 36.7
BcaB02g08045 Brassica carinata HOM05D009566 ORTHO05D007629 1.3e-17 94.4 186 43.0
BcaC02g09508 Brassica carinata HOM05D009566 ORTHO05D007629 4.1e-16 89.4 225 34.7
Lj5g0006161 Lotus japonicus HOM05D007504 ORTHO05D007629 1.7e-14 84.0 79 53.2
BolC4t25935H Brassica oleracea HOM05D009566 ORTHO05D007629 3.0e-14 83.2 226 34.1
A04p10080 Brassica napus HOM05D009566 ORTHO05D007629 2.5e-13 80.1 229 34.9
BraA04t16670Z Brassica rapa HOM05D009566 ORTHO05D007629 2.5e-13 80.1 232 33.6
BcaB06g27006 Brassica carinata HOM05D009566 ORTHO05D007629 9.5e-13 78.2 227 34.8
Eucgr.H01377 Eucalyptus grandis HOM05D007504 ORTHO05D007629 9.5e-13 78.2 154 33.8
Oeu008540.1 Olea europaea HOM05D007504 ORTHO05D007629 1.6e-12 77.4 118 39.0
C04p43550 Brassica napus HOM05D009566 ORTHO05D007629 6.2e-12 75.5 223 33.6
FAN09G1848 Fragaria x ananassa HOM05D007504 ORTHO05D007629 8.1e-12 75.1 190 34.7
Actinidia38910 Actinidia chinensis HOM05D007504 ORTHO05D007629 1.1e-11 74.7 204 34.3
Migut.F01885 Erythranthe guttata HOM05D007504 ORTHO05D007629 1.4e-11 74.3 111 39.6
Dinv02913 Davidia involucrata HOM05D007504 ORTHO05D007629 1.8e-11 73.9 183 37.2
Nitab4.5_0000456g0090 Nicotiana tabacum HOM05D007504 ORTHO05D007629 6.8e-11 72.0 208 35.1
Prupe.6G358500 Prunus persica HOM05D007504 ORTHO05D007629 1.2e-10 71.2 66 53.0
RcHm_v2.0_Chr3g0448301 Rosa chinensis HOM05D007504 ORTHO05D007629 1.2e-10 71.2 124 39.5
MELO3C021807.2 Cucumis melo HOM05D007504 ORTHO05D007629 2.6e-10 70.1 195 31.8
Solyc04g051280.4 Solanum lycopersicum HOM05D007504 ORTHO05D007629 3.4e-10 69.7 215 34.0
Manes.08G105000 Manihot esculenta HOM05D007504 ORTHO05D007629 4.4e-10 69.3 179 37.4
TAR636G2263 Trochodendron aralioides HOM05D007504 ORTHO05D007629 4.4e-10 69.3 148 35.8
FvH4_6g00830 Fragaria vesca HOM05D007504 ORTHO05D007629 7.6e-10 68.6 195 31.3
FAN14G3522 Fragaria x ananassa HOM05D007504 ORTHO05D007629 7.6e-10 68.6 195 31.3
Nitab4.5_0000276g0060 Nicotiana tabacum HOM05D007504 ORTHO05D007629 7.6e-10 68.6 230 33.0
PSO017G3378 Papaver somniferum HOM05D007504 ORTHO05D007629 1.3e-09 67.8 65 49.2
PGR031G1611 Punica granatum HOM05D007504 ORTHO05D007629 1.3e-09 67.8 79 46.8
Oeu014606.1 Olea europaea HOM05D007504 ORTHO05D007629 2.2e-09 67.0 66 51.5
EL10Ac4g09412 Beta vulgaris HOM05D007504 ORTHO05D007629 2.9e-09 66.6 71 49.3
Glyma.20G219900 Glycine max HOM05D007504 ORTHO05D007629 2.9e-09 66.6 63 47.6
Rhsim09G0131100 Rhododendron simsii HOM05D007504 ORTHO05D007629 2.9e-09 66.6 184 35.3
DCAR_029902 Daucus carota HOM05D007504 ORTHO05D007629 4.9e-09 65.9 209 32.1
Sopen04g022690 Solanum pennellii HOM05D007504 ORTHO05D007629 4.9e-09 65.9 212 30.7
SalBow6G5451 Salvia bowleyana HOM05D007504 ORTHO05D007629 6.4e-09 65.5 77 46.8
Atru.chr12.1547 Acer truncatum HOM05D007504 ORTHO05D007629 1.1e-08 64.7 215 32.1
CiPaw.07G074500 Carya illinoinensis HOM05D007504 ORTHO05D007629 1.1e-08 64.7 229 30.6
Gohir.D13G093400 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.1e-08 64.7 78 41.0
TWI59G0549 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 1.1e-08 64.7 150 34.7
Ah.06g195770 Amaranthus hybridus HOM05D007504 ORTHO05D007629 1.4e-08 64.3 188 31.4
Gohir.A13G089900 Gossypium hirsutum HOM05D007504 ORTHO05D007629 1.4e-08 64.3 66 45.5
Cpa.g.sc123.15 Carica papaya HOM05D007504 ORTHO05D007629 1.9e-08 63.9 78 48.7
HanXRQChr05g0156881 Helianthus annuus HOM05D007504 ORTHO05D007629 1.9e-08 63.9 120 35.8
arahy.Tifrunner.gnm1.ann1.DN7JE5 Arachis hypogaea HOM05D007504 ORTHO05D007629 2.4e-08 63.5 208 29.8
Peaxi162Scf00994g00026 Petunia axillaris HOM05D007504 ORTHO05D007629 2.4e-08 63.5 171 36.8
PGSC0003DMG400016931 Solanum tuberosum HOM05D007504 ORTHO05D007629 3.2e-08 63.2 184 32.1
Cfa006286 Carpinus fangiana HOM05D007504 ORTHO05D007629 7.1e-08 62.0 156 32.1
Sed0012429 Sechium edule HOM05D007504 ORTHO05D007629 7.1e-08 62.0 189 30.2
TWI14G0943 Tripterygium wilfordii HOM05D007504 ORTHO05D007629 7.1e-08 62.0 153 34.0
CsaV3_1G037800 Cucumis sativus L. HOM05D007504 ORTHO05D007629 9.2e-08 61.6 185 28.1
Cc09_g03320 Coffea canephora HOM05D007504 ORTHO05D007629 1.2e-07 61.2 205 32.2
CSS0023929 Camellia sinensis var. sinensis HOM05D007504 ORTHO05D007629 3.5e-07 59.7 231 29.0
Sc09g0001620 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.6e-07 59.3 221 29.9
Sc09g0001640 Simmondsia chinensis HOM05D007504 ORTHO05D007629 4.6e-07 59.3 221 29.9
Ca_09972_v3 Cicer arietinum L. HOM05D007504 ORTHO05D007629 6.0e-07 58.9 73 39.7
Duzib177G0136 Durio zibethinus HOM05D007504 ORTHO05D007629 7.8e-07 58.5 212 29.2
Psat6g051960 Pisum sativum HOM05D007504 ORTHO05D007629 1.0e-06 58.2 66 42.4
QL01p050434 Quercus lobata HOM05D007504 ORTHO05D007629 1.3e-06 57.8 206 30.1
SHI33673 Sapria himalayana HOM05D007504 ORTHO05D000001 1.3e-06 57.8 226 28.8
Sabra19G0056400 Salix brachista HOM05D007504 ORTHO05D007629 1.7e-06 57.4 164 36.0
CAN.G29.22 Capsicum annuum HOM05D007504 ORTHO05D007629 2.3e-06 57.0 230 31.3
TPR.G14656 Trifolium pratense HOM05D007504 ORTHO05D007629 3.0e-06 56.6 70 40.0
Aqoxy2G03947 Aquilegia oxysepala HOM05D007504 ORTHO05D007629 3.9e-06 56.2 218 29.4
VMungo0720G1881 Vigna mungo HOM05D007504 ORTHO05D007629 5.1e-06 55.8 257 25.7
arahy.Tifrunner.gnm1.ann1.V3BTAU Arachis hypogaea HOM05D007504 ORTHO05D007629 6.6e-06 55.5 208 29.3
AUR62000366 Chenopodium quinoa HOM05D007504 ORTHO05D007629 8.6e-06 55.1 178 32.0
MD04G1241000 Malus domestica HOM05D007504 ORTHO05D007629 8.6e-06 55.1 46 60.9


User provided reference genes

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