Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g18870 Schrenkiella parvula HOM05D005192 ORTHO05D006023 3.8e-85 318.2 163 100.0
BcaC03g15075 Brassica carinata HOM05D005192 ORTHO05D006023 2.8e-80 302.0 163 93.9
BcaC03g15076 Brassica carinata HOM05D005192 ORTHO05D006023 2.8e-80 302.0 163 93.9
A02p15850 Brassica napus HOM05D005192 ORTHO05D006023 2.8e-80 302.0 163 93.9
BolC2t08702H Brassica oleracea HOM05D005192 ORTHO05D006023 2.8e-80 302.0 163 93.9
C02p26310 Brassica napus HOM05D005192 ORTHO05D006023 2.4e-79 298.9 163 92.6
BcaB05g24444 Brassica carinata HOM05D005192 ORTHO05D006023 1.3e-77 293.1 163 90.8
CARHR056260 Cardamine hirsuta HOM05D005192 ORTHO05D006023 1.7e-77 292.7 163 89.6
AT1G64850 Arabidopsis thaliana HOM05D005192 ORTHO05D006023 7.1e-76 287.3 163 87.7
AL2G19260 Arabidopsis lyrata HOM05D005192 ORTHO05D006023 9.3e-76 287.0 163 87.7
Carub.0012s0005 Capsella rubella HOM05D005192 ORTHO05D006023 3.9e-74 281.6 163 86.5
Aa31LG2G2090 Aethionema arabicum HOM05D005192 ORTHO05D006023 2.0e-70 269.2 165 82.4
THA.LOC104805728 Tarenaya hassleriana HOM05D005192 ORTHO05D006023 9.4e-68 260.4 156 81.4
Cpa.g.sc73.77 Carica papaya HOM05D005192 ORTHO05D006023 1.1e-65 253.4 159 78.6
Atru.chr2.1677 Acer truncatum HOM05D005192 ORTHO05D006023 6.3e-64 247.7 156 78.2
TWI32G1299 Tripterygium wilfordii HOM05D005192 ORTHO05D006023 1.4e-63 246.5 156 75.0
Thecc.05G232400 Theobroma cacao HOM05D005192 ORTHO05D006023 3.1e-63 245.4 156 75.6
Hund26918 Selenicereus undatus HOM05D005192 ORTHO05D006023 4.1e-63 245.0 159 75.5
Sc26g0002010 Simmondsia chinensis HOM05D005192 ORTHO05D006023 5.3e-63 244.6 155 76.8
Duzib177G0632 Durio zibethinus HOM05D005192 ORTHO05D006023 6.9e-63 244.2 156 76.3
Duzib128G1721 Durio zibethinus HOM05D005192 ORTHO05D006023 1.5e-62 243.0 156 75.0
Prupe.2G101300 Prunus persica HOM05D005192 ORTHO05D006023 3.4e-62 241.9 155 74.8
Dinv43977 Davidia involucrata HOM05D005192 ORTHO05D006023 7.7e-62 240.7 155 74.8
Potri.013G072600 Populus trichocarpa HOM05D005192 ORTHO05D006023 7.7e-62 240.7 156 75.0
Gohir.A13G082000 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.0e-61 240.4 156 73.1
Hma1.2p1_0353F.1_g133370 Hydrangea macrophylla HOM05D005192 ORTHO05D006023 2.2e-61 239.2 155 76.8
PGR042G1459 Punica granatum HOM05D005192 ORTHO05D006023 2.9e-61 238.8 155 76.1
Gohir.D13G100100 Gossypium hirsutum HOM05D005192 ORTHO05D006023 8.5e-61 237.3 156 71.2
Gorai.013G112500 Gossypium raimondii HOM05D005192 ORTHO05D006023 1.1e-60 236.9 156 71.8
Ciclev10032932m.g Citrus clementina HOM05D005192 ORTHO05D006023 1.9e-60 236.1 156 73.1
Cc02_g26360 Coffea canephora HOM05D005192 ORTHO05D006023 1.9e-60 236.1 155 73.5
arahy.Tifrunner.gnm1.ann1.8Z97YG Arachis hypogaea HOM05D005192 ORTHO05D006023 2.5e-60 235.7 161 72.7
arahy.Tifrunner.gnm1.ann1.SX2T07 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.5e-60 235.7 161 72.7
COL.COLO4_08549 Corchorus olitorius HOM05D005192 ORTHO05D006023 5.5e-60 234.6 156 71.2
AUR62014514 Chenopodium quinoa HOM05D000462 ORTHO05D006023 2.7e-59 232.3 161 70.8
Sabra13G0062500 Salix brachista HOM05D005192 ORTHO05D006023 4.7e-59 231.5 156 74.4
RcHm_v2.0_Chr1g0340081 Rosa chinensis HOM05D005192 ORTHO05D006023 6.1e-59 231.1 157 70.1
Actinidia05822 Actinidia chinensis HOM05D005192 ORTHO05D006023 7.9e-59 230.7 155 72.3
Eucgr.E01765 Eucalyptus grandis HOM05D005192 ORTHO05D006023 7.9e-59 230.7 155 72.3
Gohir.D11G235900 Gossypium hirsutum HOM05D005192 ORTHO05D006023 1.8e-58 229.6 155 71.6
GSVIVG01011324001 Vitis vinifera HOM05D005192 ORTHO05D006023 1.8e-58 229.6 155 71.6
Glyma.03G098300 Glycine max HOM05D005192 ORTHO05D006023 3.9e-58 228.4 156 70.5
CiPaw.02G036100 Carya illinoinensis HOM05D005192 ORTHO05D006023 5.1e-58 228.0 156 74.4
FAN01G2901 Fragaria x ananassa HOM05D005192 ORTHO05D006023 6.7e-58 227.6 157 71.3
Nitab4.5_0005106g0020 Nicotiana tabacum HOM05D005192 ORTHO05D006023 6.7e-58 227.6 156 72.4
Gorai.007G248800 Gossypium raimondii HOM05D005192 ORTHO05D006023 8.8e-58 227.3 155 71.0
Nitab4.5_0004800g0050 Nicotiana tabacum HOM05D005192 ORTHO05D006023 1.5e-57 226.5 155 71.6
Lj3g0015892 Lotus japonicus HOM05D005192 ORTHO05D006023 2.0e-57 226.1 156 71.8
Manes.09G132000 Manihot esculenta HOM05D005192 ORTHO05D006023 2.6e-57 225.7 156 69.9
PGSC0003DMG400001805 Solanum tuberosum HOM05D005192 ORTHO05D006023 2.6e-57 225.7 155 69.7
FAN03G1308 Fragaria x ananassa HOM05D005192 ORTHO05D006023 3.3e-57 225.3 157 69.4
ECA234G1488 Erigeron canadensis HOM05D005192 ORTHO05D006023 4.4e-57 224.9 163 64.4
FAN10G1987 Fragaria x ananassa HOM05D005192 ORTHO05D006023 4.4e-57 224.9 157 69.4
vmacro13581 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 4.4e-57 224.9 157 72.6
HanXRQChr11g0330951 Helianthus annuus HOM05D005192 ORTHO05D006023 5.7e-57 224.6 157 68.8
FvH4_7g07320 Fragaria vesca HOM05D005192 ORTHO05D006023 1.3e-56 223.4 157 68.8
Solyc01g081190.4 Solanum lycopersicum HOM05D005192 ORTHO05D006023 1.3e-56 223.4 155 69.7
Peaxi162Scf00592g00452 Petunia axillaris HOM05D005192 ORTHO05D006023 1.7e-56 223.0 155 69.0
Peaxi162Scf00245g00322 Petunia axillaris HOM05D005192 ORTHO05D006023 2.2e-56 222.6 155 69.0
SGA_v2.0_scaffold98G29401 Striga asiatica HOM05D005192 ORTHO05D006023 2.2e-56 222.6 155 70.3
Lsat_1_v5_gn_4_42301 Lactuca sativa HOM05D005192 ORTHO05D006023 2.8e-56 222.2 157 65.0
Lj9C612T3 Lonicera japonica HOM05D005192 ORTHO05D006023 2.8e-56 222.2 155 68.4
Lalb_Chr07g0194821 Lupinus albus HOM05D005192 ORTHO05D006023 2.8e-56 222.2 156 67.3
Nitab4.5_0000050g0110 Nicotiana tabacum HOM05D005192 ORTHO05D006023 3.7e-56 221.9 146 74.7
CAN.G700.32 Capsicum annuum HOM05D005192 ORTHO05D006023 4.8e-56 221.5 155 66.5
Phvul.010G038600 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 4.8e-56 221.5 156 69.2
vmacro13584 Vaccinium macrocarpon HOM05D005192 ORTHO05D006023 8.2e-56 220.7 157 69.4
Haze_15802 Corylus avellana HOM05D005192 ORTHO05D006023 1.8e-55 219.5 148 73.6
MSTRG.17088 Avicennia marina HOM05D005192 ORTHO05D006023 3.1e-55 218.8 155 67.1
Migut.B01443 Erythranthe guttata HOM05D005192 ORTHO05D006023 4.1e-55 218.4 155 67.1
Rhsim07G0045800 Rhododendron simsii HOM05D005192 ORTHO05D006023 7.0e-55 217.6 146 75.3
Ah.05g177160 Amaranthus hybridus HOM05D005192 ORTHO05D006023 1.2e-54 216.9 159 69.8
Medtr8g009870 Medicago truncatula HOM05D005192 ORTHO05D006023 1.2e-54 216.9 156 67.3
Dinv43532 Davidia involucrata HOM05D005192 ORTHO05D006023 2.0e-54 216.1 155 67.7
Ca_25887_v3 Cicer arietinum L. HOM05D000403 ORTHO05D000350 3.5e-54 215.3 147 72.1
Lalb_Chr12g0210171 Lupinus albus HOM05D005192 ORTHO05D006023 3.5e-54 215.3 156 67.9
CiPaw.01G068900 Carya illinoinensis HOM05D005192 ORTHO05D006023 5.9e-54 214.5 155 69.7
CiPaw.01G069000 Carya illinoinensis HOM05D005192 ORTHO05D006023 7.7e-54 214.2 157 68.8
VMungo0331G1938 Vigna mungo HOM05D005192 ORTHO05D006023 7.7e-54 214.2 156 67.9
Aqoxy3G01990 Aquilegia oxysepala HOM05D005192 ORTHO05D006023 1.0e-53 213.8 164 62.8
MD02G1236200 Malus domestica HOM05D005192 ORTHO05D006023 1.0e-53 213.8 149 71.1
TPR.G17364 Trifolium pratense HOM05D005192 ORTHO05D006023 2.2e-53 212.6 156 66.7
AUR62038020 Chenopodium quinoa HOM05D005192 ORTHO05D006023 2.9e-53 212.2 187 59.9
TAR629G1606 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.9e-53 212.2 161 64.6
Nn3g21169 Nelumbo nucifera HOM05D005192 ORTHO05D006023 3.8e-53 211.8 159 66.7
CANSAT01G0826 Cannabis sativa HOM05D005192 ORTHO05D006023 6.5e-53 211.1 157 65.0
PSO063G5995 Papaver somniferum HOM05D005192 ORTHO05D006023 1.9e-52 209.5 156 62.2
PSO782G4714 Papaver somniferum HOM05D005192 ORTHO05D006023 3.2e-52 208.8 157 61.8
DCAR_015753 Daucus carota HOM05D005192 ORTHO05D006023 4.2e-52 208.4 146 68.5
FAN06G2558 Fragaria x ananassa HOM05D005192 ORTHO05D006023 1.2e-51 206.8 147 68.0
Gohir.A11G222400 Gossypium hirsutum HOM05D005192 ORTHO05D006023 2.7e-51 205.7 142 70.4
Solyc10g061870.1 Solanum lycopersicum HOM05D005192 ORTHO05D006023 3.6e-51 205.3 146 68.5
DCAR_029189 Daucus carota HOM05D005192 ORTHO05D006023 8.0e-51 204.1 155 63.9
Oeu060687.1 Olea europaea HOM05D005192 ORTHO05D006023 8.0e-51 204.1 146 65.1
Psat4g215840 Pisum sativum HOM05D005192 ORTHO05D006023 2.3e-50 202.6 147 67.3
ATR0829G090 Amborella trichopoda HOM05D005192 ORTHO05D006023 5.2e-50 201.4 163 60.7
unitig_61.g26432 Utricularia gibba HOM05D005192 ORTHO05D006023 6.7e-50 201.1 155 61.3
Nitab4.5_0004594g0120 Nicotiana tabacum HOM05D005192 ORTHO05D006023 4.4e-49 198.4 138 71.7
HPP92_014406 Vanilla planifolia HOM05D005192 ORTHO05D006023 4.4e-49 198.4 161 62.1
Sopen01g032770 Solanum pennellii HOM05D005192 ORTHO05D006023 1.3e-48 196.8 138 70.3
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.8e-47 193.0 145 66.2
unitig_0.g1357 Utricularia gibba HOM05D005192 ORTHO05D006023 2.4e-47 192.6 142 63.4
ClCG05G002570 Citrullus lanatus HOM05D005192 ORTHO05D006023 7.0e-47 191.0 155 59.4
Os04g0601400 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 9.1e-47 190.7 168 56.5
TAR629G2600 Trochodendron aralioides HOM05D005192 ORTHO05D006023 2.0e-46 189.5 161 57.8
MD02G1236300 Malus domestica HOM05D005192 ORTHO05D006023 1.3e-45 186.8 148 64.2
Nn3g21165 Nelumbo nucifera HOM05D005192 ORTHO05D006023 1.9e-44 183.0 155 57.4
Zm00001eb071820 Zea mays HOM05D005192 ORTHO05D006023 9.4e-44 180.6 163 55.2
arahy.Tifrunner.gnm1.ann1.9NJ9Q0 Arachis hypogaea HOM05D005192 ORTHO05D006023 2.7e-43 179.1 156 60.3
Glyma.07G123500 Glycine max HOM05D005192 ORTHO05D006023 3.6e-43 178.7 119 73.1
Sed0012289 Sechium edule HOM05D005192 ORTHO05D006023 4.7e-43 178.3 155 56.1
CsaV3_3G010010 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.0e-42 177.2 155 56.8
Phvul.010G038700 Phaseolus vulgaris HOM05D005192 ORTHO05D006023 4.0e-42 175.3 156 53.8
Oeu041522.2 Olea europaea HOM05D005192 ORTHO05D006023 5.2e-42 174.9 118 72.0
Sed0020247 Sechium edule HOM05D005192 ORTHO05D006023 5.2e-42 174.9 157 56.1
Glyma.03G098400 Glycine max HOM05D005192 ORTHO05D006023 8.8e-42 174.1 162 54.3
Peaxi162Scf00250g00049 Petunia axillaris HOM05D005192 ORTHO05D006023 2.2e-40 169.5 126 69.0
CDE04G3605 Ceratophyllum demersum HOM05D005192 ORTHO05D006023 8.3e-40 167.5 164 47.6
MELO3C006223.2 Cucumis melo HOM05D005192 ORTHO05D006023 1.0e-37 160.6 184 46.7
Lj7A558T36 Lonicera japonica HOM05D005192 ORTHO05D006023 2.7e-35 152.5 103 72.8
Thhalv10011151m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 4.7e-35 151.8 85 95.3
SMO137G0328 Selaginella moellendorffii HOM05D005192 ORTHO05D006023 2.0e-33 146.4 147 49.7
MELO3C006222.2 Cucumis melo HOM05D005192 ORTHO05D006023 2.6e-33 146.0 169 49.7
Mapoly0125s0044 Marchantia polymorpha HOM05D005192 ORTHO05D006023 1.3e-32 143.7 150 46.7
ClCG05G002560 Citrullus lanatus HOM05D005192 ORTHO05D006023 2.2e-32 142.9 160 51.2
Thhalv10010860m.g Eutrema salsugineum HOM05D005192 ORTHO05D006023 2.2e-32 142.9 83 83.1
AagrBONN_evm.TU.Sc2ySwM_117.2458 Anthoceros agrestis HOM05D005192 ORTHO05D006023 3.5e-30 135.6 155 43.9
CsaV3_3G010000 Cucumis sativus L. HOM05D005192 ORTHO05D006023 1.7e-29 133.3 160 46.9
Lj9A615G51 Lonicera japonica HOM05D005192 ORTHO05D006023 8.6e-29 131.0 89 71.9
QL04p052587 Quercus lobata HOM05D005192 ORTHO05D006023 6.8e-26 121.3 76 71.1
QL04p052584 Quercus lobata HOM05D005192 ORTHO05D006023 2.0e-25 119.8 83 73.5
Pp3c3_35520 Physcomitrium patens HOM05D005192 ORTHO05D006023 1.7e-24 116.7 152 40.1
Pp3c12_14230 Physcomitrium patens HOM05D005192 ORTHO05D006023 8.3e-24 114.4 149 40.3
ATR0829G133 Amborella trichopoda HOM05D005192 ORTHO05D006023 1.8e-23 113.2 156 38.5
SEGI_22185 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 4.5e-22 108.6 168 34.5
SEGI_22584 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 4.5e-22 108.6 168 34.5
SEGI_29719 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 4.5e-22 108.6 168 34.5
PGSC0003DMG400013231 Solanum tuberosum HOM05D005192 ORTHO05D006023 7.8e-22 107.8 77 72.7
MBI04_g12223_MAGBIO Magnolia biondii HOM05D013086 ORTHO05D006023 7.0e-15 84.7 141 36.2
SEGI_29788 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 7.0e-15 84.7 170 30.6
HPP92_003408 Vanilla planifolia HOM05D005192 ORTHO05D006023 2.3e-13 79.7 143 31.5
SEGI_19507 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 3.9e-13 79.0 172 27.9
SEGI_41139 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 5.0e-13 78.6 172 27.9
SEGI_33126 Sequoiadendron giganteum HOM05D005192 ORTHO05D006023 8.6e-13 77.8 172 27.9
MD07G1078400 Malus domestica HOM05D005192 ORTHO05D006023 1.9e-12 76.6 51 64.7
Os04g0601500 Oryza sativa ssp. japonica HOM05D005192 ORTHO05D006023 7.3e-12 74.7 141 34.0
Zm00001eb430320 Zea mays HOM05D005192 ORTHO05D006023 2.6e-09 66.2 156 30.1
CANSAT21G1080 Cannabis sativa HOM05D002637 ORTHO05D009046 6.4e-08 61.6 156 25.6
CBR_g41233 Chara braunii HOM05D000019 ORTHO05D000048 8.3e-08 61.2 102 39.2
Carub.0007s0284 Capsella rubella HOM05D002637 ORTHO05D009046 2.4e-07 59.7 127 28.3
AL7G13350 Arabidopsis lyrata HOM05D002637 ORTHO05D009046 4.1e-07 58.9 127 28.3
Thhalv10026444m.g Eutrema salsugineum HOM05D002637 ORTHO05D009046 4.1e-07 58.9 127 29.1
ATR0057G030 Amborella trichopoda HOM05D002637 ORTHO05D009046 5.4e-07 58.5 142 29.6
AT4G37445 Arabidopsis thaliana HOM05D002637 ORTHO05D009046 5.4e-07 58.5 127 28.3
CARHR245840 Cardamine hirsuta HOM05D002637 ORTHO05D009046 5.4e-07 58.5 127 28.3
Sp7g35140 Schrenkiella parvula HOM05D002637 ORTHO05D009046 9.2e-07 57.8 127 28.3
BcaNung03660 Brassica carinata HOM05D002637 ORTHO05D009046 3.5e-06 55.8 127 28.3
Ciclev10026646m.g Citrus clementina HOM05D002637 ORTHO05D009046 3.5e-06 55.8 113 29.2
Glyma.03G113700 Glycine max HOM05D002637 ORTHO05D009046 6.0e-06 55.1 152 27.0
Hund17084 Selenicereus undatus HOM05D002637 ORTHO05D009046 7.8e-06 54.7 136 29.4


User provided reference genes

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