Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g18130 Schrenkiella parvula HOM05D000568 ORTHO05D000628 1.8e-93 345.9 178 100.0
Sp4g29780 Schrenkiella parvula HOM05D000568 ORTHO05D000628 1.6e-20 103.6 67 77.6
AL39U10010 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 2.1e-20 103.2 67 77.6
AL4G47430 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 2.1e-20 103.2 67 77.6
Carub.0004s3056 Capsella rubella HOM05D000568 ORTHO05D000628 2.1e-20 103.2 67 77.6
AT2G47850 Arabidopsis thaliana HOM05D000568 ORTHO05D000628 4.7e-20 102.1 67 76.1
CARHR143250 Cardamine hirsuta HOM05D000568 ORTHO05D000628 1.0e-19 100.9 67 76.1
Thhalv10001399m.g Eutrema salsugineum HOM05D000568 ORTHO05D000628 2.0e-18 96.7 68 75.0
Cpa.g.sc9.186 Carica papaya HOM05D000568 ORTHO05D000628 9.1e-16 87.8 131 45.8
Aa31LG1G29250 Aethionema arabicum HOM05D000568 ORTHO05D000628 5.9e-15 85.1 70 67.1
COL.COLO4_08006 Corchorus olitorius HOM05D000568 ORTHO05D000628 1.1e-13 80.9 70 65.7
Duzib138G0737 Durio zibethinus HOM05D000568 ORTHO05D000628 2.5e-13 79.7 70 64.3
Gohir.A12G009500 Gossypium hirsutum HOM05D000568 ORTHO05D000628 2.5e-13 79.7 70 64.3
Gohir.D12G009500 Gossypium hirsutum HOM05D000568 ORTHO05D000628 2.5e-13 79.7 70 64.3
Duzib133G0182 Durio zibethinus HOM05D000568 ORTHO05D000628 3.2e-13 79.3 70 62.9
Gorai.008G009500 Gossypium raimondii HOM05D000568 ORTHO05D000628 5.5e-13 78.6 70 64.3
Gohir.A08G073500 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.2e-12 77.4 70 62.9
THA.LOC104817519 Tarenaya hassleriana HOM05D000568 ORTHO05D000628 1.2e-12 77.4 69 62.3
Thecc.01G293100 Theobroma cacao HOM05D000568 ORTHO05D000628 1.2e-12 77.4 70 62.9
Gorai.004G053200 Gossypium raimondii HOM05D000568 ORTHO05D000628 6.1e-12 75.1 70 61.4
Gohir.D08G053300 Gossypium hirsutum HOM05D000568 ORTHO05D000628 8.0e-12 74.7 70 61.4
CiPaw.08G099400 Carya illinoinensis HOM05D000568 ORTHO05D000628 1.0e-11 74.3 70 54.3
Gohir.D08G082900 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.4e-11 73.9 70 61.4
Gorai.004G086700 Gossypium raimondii HOM05D000568 ORTHO05D000628 1.4e-11 73.9 70 61.4
Gohir.A08G043700 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.8e-11 73.6 70 60.0
Atru.chr5.1247 Acer truncatum HOM05D000568 ORTHO05D000628 2.3e-11 73.2 70 57.1
Cfa005997 Carpinus fangiana HOM05D000568 ORTHO05D000628 8.8e-11 71.2 69 56.5
Haze_04844 Corylus avellana HOM05D000568 ORTHO05D000628 8.8e-11 71.2 69 56.5
Manes.05G066400 Manihot esculenta HOM05D000568 ORTHO05D000628 1.5e-10 70.5 69 56.5
arahy.Tifrunner.gnm1.ann1.KWAB0D Arachis hypogaea HOM05D000568 ORTHO05D000628 2.0e-10 70.1 70 57.1
arahy.Tifrunner.gnm1.ann1.RI5H0P Arachis hypogaea HOM05D000568 ORTHO05D000628 2.0e-10 70.1 70 57.1
FAN27G1623 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.0e-10 70.1 70 60.0
Lalb_Chr18g0047311 Lupinus albus HOM05D000568 ORTHO05D000628 2.6e-10 69.7 70 55.7
TWI59G1193 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 2.6e-10 69.7 70 57.1
BcaC01g05013 Brassica carinata HOM05D000568 ORTHO05D000628 4.4e-10 68.9 67 62.7
A03p26100 Brassica napus HOM05D000568 ORTHO05D000628 4.4e-10 68.9 67 62.7
C03p31130 Brassica napus HOM05D000568 ORTHO05D000628 4.4e-10 68.9 67 62.7
BraA03t11825Z Brassica rapa HOM05D000568 ORTHO05D000628 4.4e-10 68.9 67 62.7
BcaB02g08744 Brassica carinata HOM05D000568 ORTHO05D000628 5.7e-10 68.6 67 62.7
CiPaw.07G102500 Carya illinoinensis HOM05D000568 ORTHO05D000628 5.7e-10 68.6 70 55.7
Ciclev10019968m.g Citrus clementina HOM05D000568 ORTHO05D000628 5.7e-10 68.6 70 54.3
FAN24G0913 Fragaria x ananassa HOM05D000568 ORTHO05D000628 5.7e-10 68.6 70 57.1
Lalb_Chr04g0259751 Lupinus albus HOM05D000568 ORTHO05D000628 5.7e-10 68.6 70 55.7
SGA_v2.0_scaffold2G01418 Striga asiatica HOM05D000568 ORTHO05D000628 7.4e-10 68.2 69 49.3
FvH4_2g24990 Fragaria vesca HOM05D000568 ORTHO05D000628 9.7e-10 67.8 70 58.6
FAN15G1036 Fragaria x ananassa HOM05D000568 ORTHO05D000628 9.7e-10 67.8 70 58.6
FAN20G2496 Fragaria x ananassa HOM05D000568 ORTHO05D000628 9.7e-10 67.8 70 58.6
Glyma.02G153700 Glycine max HOM05D000568 ORTHO05D000628 9.7e-10 67.8 70 54.3
Gohir.A11G116700 Gossypium hirsutum HOM05D000568 ORTHO05D000628 9.7e-10 67.8 70 57.1
PGR119G1099 Punica granatum HOM05D000568 ORTHO05D000628 1.3e-09 67.4 70 54.3
BolC3t15460H Brassica oleracea HOM05D000568 ORTHO05D000628 1.7e-09 67.0 67 61.2
Gohir.D11G121800 Gossypium hirsutum HOM05D000568 ORTHO05D000628 1.7e-09 67.0 70 57.1
Prupe.8G254900 Prunus persica HOM05D000568 ORTHO05D000628 2.2e-09 66.6 70 57.1
RcHm_v2.0_Chr6g0292971 Rosa chinensis HOM05D000568 ORTHO05D000628 2.2e-09 66.6 70 57.1
Lj5g0005422 Lotus japonicus HOM05D000568 ORTHO05D000628 2.8e-09 66.2 70 54.3
Phvul.007G165200 Phaseolus vulgaris HOM05D000568 ORTHO05D000628 2.8e-09 66.2 70 52.9
Rhsim13G0015800 Rhododendron simsii HOM05D000568 ORTHO05D000628 2.8e-09 66.2 91 44.0
Lj6A671T65 Lonicera japonica HOM05D000568 ORTHO05D000628 3.7e-09 65.9 71 47.9
Manes.01G215400 Manihot esculenta HOM05D000568 ORTHO05D000628 3.7e-09 65.9 70 55.7
Actinidia14311 Actinidia chinensis HOM05D000568 ORTHO05D000628 4.8e-09 65.5 77 48.1
VMungo0720G1879 Vigna mungo HOM05D000568 ORTHO05D000628 4.8e-09 65.5 70 52.9
Gorai.007G130500 Gossypium raimondii HOM05D000568 ORTHO05D000628 6.3e-09 65.1 70 55.7
Rhsim04G0218900 Rhododendron simsii HOM05D000568 ORTHO05D000628 6.3e-09 65.1 71 49.3
Glyma.10G020700 Glycine max HOM05D000568 ORTHO05D000628 8.2e-09 64.7 70 54.3
QL12p024472 Quercus lobata HOM05D000568 ORTHO05D000628 8.2e-09 64.7 70 50.0
Dinv33013 Davidia involucrata HOM05D000568 ORTHO05D000628 1.1e-08 64.3 69 52.2
Eucgr.H01196 Eucalyptus grandis HOM05D000568 ORTHO05D000628 1.1e-08 64.3 70 48.6
Rhsim02G0012300 Rhododendron simsii HOM05D000568 ORTHO05D000628 1.4e-08 63.9 71 49.3
DCAR_027092 Daucus carota HOM05D000568 ORTHO05D000628 1.8e-08 63.5 74 48.6
Eucgr.H03871 Eucalyptus grandis HOM05D000568 ORTHO05D000628 1.8e-08 63.5 71 49.3
Glyma.02G153600 Glycine max HOM05D000568 ORTHO05D000628 1.8e-08 63.5 70 52.9
Nn3g21373 Nelumbo nucifera HOM05D000568 ORTHO05D000628 1.8e-08 63.5 73 46.6
MD03G1278900 Malus domestica HOM05D000568 ORTHO05D000628 2.4e-08 63.2 70 55.7
MD03G1280300 Malus domestica HOM05D000568 ORTHO05D000628 2.4e-08 63.2 70 55.7
MD11G1301200 Malus domestica HOM05D000568 ORTHO05D000628 2.4e-08 63.2 70 55.7
TPR.G33955 Trifolium pratense HOM05D000568 ORTHO05D000628 2.4e-08 63.2 70 52.9
A05p00160 Brassica napus HOM05D000568 ORTHO05D000628 3.1e-08 62.8 68 55.9
BraA05t19012Z Brassica rapa HOM05D000568 ORTHO05D000628 3.1e-08 62.8 68 55.9
PGR004G0077 Punica granatum HOM05D000568 ORTHO05D000628 3.1e-08 62.8 71 49.3
Manes.03G192500 Manihot esculenta HOM05D000568 ORTHO05D000628 4.1e-08 62.4 70 47.1
Sc17g0003470 Simmondsia chinensis HOM05D000568 ORTHO05D000628 4.1e-08 62.4 69 53.6
MSTRG.21605 Avicennia marina HOM05D000568 ORTHO05D000628 5.3e-08 62.0 68 47.1
Actinidia00685 Actinidia chinensis HOM05D000568 ORTHO05D000628 7.0e-08 61.6 70 51.4
Nitab4.5_0001459g0050 Nicotiana tabacum HOM05D000568 ORTHO05D000628 7.0e-08 61.6 70 48.6
Psat6g167080 Pisum sativum HOM05D000568 ORTHO05D000628 7.0e-08 61.6 70 51.4
Medtr1g088875 Medicago truncatula HOM05D000568 ORTHO05D000628 9.1e-08 61.2 70 50.0
TWI14G0800 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 9.1e-08 61.2 68 57.4
BolC4t21655H Brassica oleracea HOM05D000568 ORTHO05D000628 1.2e-07 60.8 68 54.4
TAR636G3257 Trochodendron aralioides HOM05D000568 ORTHO05D000628 1.2e-07 60.8 70 48.6
vmacro08112 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 1.2e-07 60.8 71 45.1
Aqoxy2G03056 Aquilegia oxysepala HOM05D000568 ORTHO05D000628 1.6e-07 60.5 70 48.6
BcaC02g12540 Brassica carinata HOM05D000568 ORTHO05D000628 1.6e-07 60.5 68 54.4
C04p00080 Brassica napus HOM05D000568 ORTHO05D000628 1.6e-07 60.5 68 54.4
Ca_10358_v3 Cicer arietinum L. HOM05D000568 ORTHO05D000628 1.6e-07 60.5 70 50.0
Nitab4.5_0000784g0120 Nicotiana tabacum HOM05D000568 ORTHO05D000628 1.6e-07 60.5 70 50.0
Nitab4.5_0002148g0020 Nicotiana tabacum HOM05D000568 ORTHO05D000628 1.6e-07 60.5 70 48.6
Peaxi162Scf00386g00511 Petunia axillaris HOM05D000568 ORTHO05D000628 1.6e-07 60.5 70 47.1
CSS0016477 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 2.0e-07 60.1 68 47.1
Actinidia21069 Actinidia chinensis HOM05D000568 ORTHO05D000628 2.6e-07 59.7 69 49.3
Actinidia24846 Actinidia chinensis HOM05D000568 ORTHO05D000628 2.6e-07 59.7 69 49.3
Cc01_g20430 Coffea canephora HOM05D000568 ORTHO05D000628 2.6e-07 59.7 66 48.5
Dinv38308 Davidia involucrata HOM05D000568 ORTHO05D000628 2.6e-07 59.7 70 47.1
Manes.15G014500 Manihot esculenta HOM05D000568 ORTHO05D000628 2.6e-07 59.7 70 47.1
Potri.010G022500 Populus trichocarpa HOM05D000568 ORTHO05D000628 2.6e-07 59.7 70 45.7
Sed0002919 Sechium edule HOM05D000568 ORTHO05D000628 2.6e-07 59.7 71 45.1
vmacro15249 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 2.6e-07 59.7 72 48.6
GSVIVG01017774001 Vitis vinifera HOM05D000568 ORTHO05D000628 2.6e-07 59.7 70 47.1
Nn4g25954 Nelumbo nucifera HOM05D000568 ORTHO05D000628 3.5e-07 59.3 73 45.2
Nitab4.5_0002006g0100 Nicotiana tabacum HOM05D000568 ORTHO05D000628 3.5e-07 59.3 69 46.4
CSS0001228 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 4.5e-07 58.9 71 43.7
CSS0049456 Camellia sinensis var. sinensis HOM05D000568 ORTHO05D000628 4.5e-07 58.9 71 43.7
Lj2A1187T56 Lonicera japonica HOM05D000568 ORTHO05D000628 4.5e-07 58.9 69 49.3
Sc24g0003890 Simmondsia chinensis HOM05D000568 ORTHO05D000628 4.5e-07 58.9 67 49.3
Oeu062901.3 Olea europaea HOM05D000568 ORTHO05D000628 5.9e-07 58.5 71 47.9
Peaxi162Scf00033g01322 Petunia axillaris HOM05D000568 ORTHO05D000628 5.9e-07 58.5 71 43.7
vmacro02495 Vaccinium macrocarpon HOM05D000568 ORTHO05D000628 5.9e-07 58.5 73 46.6
Cc03_g02100 Coffea canephora HOM05D000568 ORTHO05D000628 7.7e-07 58.2 70 44.3
Potri.008G215700 Populus trichocarpa HOM05D000568 ORTHO05D000628 7.7e-07 58.2 70 44.3
Sabra10G0015800 Salix brachista HOM05D000568 ORTHO05D000628 7.7e-07 58.2 70 44.3
TAR362G0552 Trochodendron aralioides HOM05D000568 ORTHO05D000628 7.7e-07 58.2 69 46.4
Dinv44403 Davidia involucrata HOM05D000568 ORTHO05D000628 1.0e-06 57.8 70 45.7
Glyma.13G217000 Glycine max HOM05D000568 ORTHO05D000628 1.7e-06 57.0 78 44.9
CAN.G223.22 Capsicum annuum HOM05D000568 ORTHO05D000628 2.2e-06 56.6 70 47.1
Lalb_Chr12g0196511 Lupinus albus HOM05D000568 ORTHO05D000628 2.2e-06 56.6 67 50.7
Peaxi162Scf00067g02114 Petunia axillaris HOM05D000568 ORTHO05D000628 2.2e-06 56.6 69 46.4
Prupe.1G139500 Prunus persica HOM05D000568 ORTHO05D000628 2.2e-06 56.6 73 42.5
SHI00322 Sapria himalayana HOM05D000568 ORTHO05D000628 2.2e-06 56.6 71 43.7
Solyc01g067550.3 Solanum lycopersicum HOM05D000568 ORTHO05D000628 2.2e-06 56.6 70 45.7
Sopen01g029500 Solanum pennellii HOM05D000568 ORTHO05D000628 2.2e-06 56.6 70 45.7
Aqoxy5G00672 Aquilegia oxysepala HOM05D000568 ORTHO05D000628 2.9e-06 56.2 69 43.5
AL6G29820 Arabidopsis lyrata HOM05D000568 ORTHO05D000628 2.9e-06 56.2 68 44.1
AUR62008571 Chenopodium quinoa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 66 47.0
Ciclev10004882m.g Citrus clementina HOM05D000568 ORTHO05D000628 2.9e-06 56.2 69 44.9
FvH4_4g17640 Fragaria vesca HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
FAN07G1518 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
FAN12G0132 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
FAN12G0371 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
FAN17G0266 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
FAN22G0784 Fragaria x ananassa HOM05D000568 ORTHO05D000628 2.9e-06 56.2 73 42.5
RcHm_v2.0_Chr4g0421561 Rosa chinensis HOM05D000568 ORTHO05D000628 2.9e-06 56.2 70 44.3
Sed0013782 Sechium edule HOM05D000568 ORTHO05D000628 2.9e-06 56.2 69 43.5
PGSC0003DMG400022651 Solanum tuberosum HOM05D000568 ORTHO05D000628 2.9e-06 56.2 70 45.7
TWI73G0244 Tripterygium wilfordii HOM05D000568 ORTHO05D000628 2.9e-06 56.2 69 44.9
Actinidia01946 Actinidia chinensis HOM05D000568 ORTHO05D000628 3.8e-06 55.8 71 43.7
Duzib052G0047 Durio zibethinus HOM05D000568 ORTHO05D000628 3.8e-06 55.8 66 47.0
Migut.G00275 Erythranthe guttata HOM05D000568 ORTHO05D000628 3.8e-06 55.8 73 45.2
Thecc.04G280600 Theobroma cacao HOM05D000568 ORTHO05D000628 3.8e-06 55.8 68 50.0
AUR62034668 Chenopodium quinoa HOM05D000568 ORTHO05D000628 5.0e-06 55.5 66 47.0
HanXRQChr06g0173811 Helianthus annuus HOM05D000568 ORTHO05D000628 5.0e-06 55.5 69 50.7
Peaxi162Scf00572g00008 Petunia axillaris HOM05D000568 ORTHO05D000628 5.0e-06 55.5 69 44.9
GSVIVG01010980001 Vitis vinifera HOM05D000568 ORTHO05D000628 5.0e-06 55.5 68 51.5
Hma1.2p1_0399F.1_g144030 Hydrangea macrophylla HOM05D000568 ORTHO05D000628 6.5e-06 55.1 68 48.5
Nitab4.5_0001102g0060 Nicotiana tabacum HOM05D000568 ORTHO05D000628 6.5e-06 55.1 69 43.5
MSTRG.10081 Avicennia marina HOM05D000568 ORTHO05D000628 8.5e-06 54.7 71 40.8
Sabra08G0155300 Salix brachista HOM05D000568 ORTHO05D000628 8.5e-06 54.7 169 28.4


User provided reference genes

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