Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 2.4e-73 278.9 152 100.0
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 3.6e-61 238.4 152 88.8
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 7.4e-59 230.7 152 86.2
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 7.4e-59 230.7 152 86.2
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 7.4e-59 230.7 152 86.2
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 2.8e-58 228.8 151 86.1
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.8e-57 226.1 151 85.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 5.9e-56 221.1 159 79.2
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 1.4e-52 209.9 155 83.9
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 3.3e-51 205.3 157 80.3
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 9.1e-49 197.2 160 77.5
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 6.5e-47 191.0 118 89.8
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 4.4e-43 178.3 160 73.8
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 3.2e-38 162.2 115 76.5
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 4.5e-32 141.7 158 60.1
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 7.2e-30 134.4 146 58.9
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 2.1e-29 132.9 107 65.4
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 2.1e-29 132.9 159 56.6
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 2.7e-29 132.5 158 57.6
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 2.7e-29 132.5 146 58.9
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.7e-29 132.5 150 59.3
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 3.6e-29 132.1 139 59.0
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 4.7e-29 131.7 159 56.6
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 6.1e-29 131.3 137 58.4
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 6.1e-29 131.3 166 54.8
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 1.4e-28 130.2 139 56.8
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 1.4e-28 130.2 98 72.4
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.8e-28 129.8 101 74.3
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 1.8e-28 129.8 159 56.0
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 1.8e-28 129.8 159 56.0
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 2.3e-28 129.4 151 57.0
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 2.3e-28 129.4 162 55.6
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 4.0e-28 128.6 153 57.5
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 6.8e-28 127.9 110 68.2
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 1.5e-27 126.7 161 54.0
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 1.5e-27 126.7 161 54.0
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 2.0e-27 126.3 156 56.4
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 2.0e-27 126.3 104 71.2
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 2.0e-27 126.3 110 65.5
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 2.6e-27 125.9 157 52.9
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 3.4e-27 125.6 98 65.3
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 3.4e-27 125.6 104 68.3
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 5.7e-27 124.8 101 70.3
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 7.5e-27 124.4 162 51.9
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 7.5e-27 124.4 151 58.3
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 7.5e-27 124.4 102 70.6
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 7.5e-27 124.4 101 69.3
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 9.8e-27 124.0 100 71.0
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 9.8e-27 124.0 101 69.3
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 9.8e-27 124.0 150 56.7
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 1.3e-26 123.6 158 51.3
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 1.3e-26 123.6 158 51.3
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 1.3e-26 123.6 101 68.3
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 1.3e-26 123.6 101 68.3
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 3.7e-26 122.1 141 51.8
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 6.3e-26 121.3 100 70.0
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 8.3e-26 120.9 88 65.9
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 1.8e-25 119.8 83 66.3
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 1.8e-25 119.8 135 51.9
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.8e-25 119.8 138 47.1
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 2.4e-25 119.4 98 67.3
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 3.1e-25 119.0 83 65.1
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 4.1e-25 118.6 154 51.9
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 4.1e-25 118.6 100 68.0
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 5.4e-25 118.2 82 70.7
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 5.4e-25 118.2 83 63.9
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 9.1e-25 117.5 162 50.6
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 9.1e-25 117.5 98 71.4
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 9.1e-25 117.5 77 70.1
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 1.2e-24 117.1 83 63.9
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.2e-24 117.1 98 70.4
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.2e-24 117.1 98 70.4
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 1.6e-24 116.7 163 50.3
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 1.6e-24 116.7 161 50.9
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 1.6e-24 116.7 156 51.3
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 3.5e-24 115.5 83 65.1
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 3.5e-24 115.5 98 68.4
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 4.5e-24 115.2 82 76.8
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 7.7e-24 114.4 101 64.4
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 2.2e-23 112.8 98 68.4
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 3.8e-23 112.1 82 61.0
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 3.8e-23 112.1 83 73.5
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 5.0e-23 111.7 111 52.3
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 4.7e-21 105.1 65 66.2
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 2.6e-19 99.4 82 56.1
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 4.4e-19 98.6 119 52.1
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 6.3e-18 94.7 213 34.3
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 1.1e-17 94.0 105 55.2
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 2.0e-16 89.7 105 54.3
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 6.6e-15 84.7 111 56.8
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 1.9e-14 83.2 111 43.2
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 5.6e-14 81.6 125 44.8
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 2.8e-13 79.3 41 73.2
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 3.4e-11 72.4 56 64.3
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 4.9e-10 68.6 44 75.0
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 8.3e-10 67.8 54 63.0
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 1.5e-06 57.0 36 72.2
COL.COLO4_25390 Corchorus olitorius HOM05D007375 ORTHO05D009293 9.5e-06 54.3 30 66.7


User provided reference genes

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