Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 0.0e+00 1102.4 566 100.0
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 1.5e-311 1072.0 566 97.3
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 7.2e-309 1063.1 566 96.1
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 3.6e-308 1060.8 566 95.8
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 5.2e-307 1057.0 567 96.5
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.2e-306 1055.8 566 95.2
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 5.7e-306 1053.5 566 95.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.7e-303 1044.6 566 93.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 9.4e-301 1036.2 566 94.5
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-296 1022.3 567 93.1
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.2e-295 1019.2 567 92.9
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.2e-295 1019.2 567 92.9
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 7.7e-295 1016.5 567 92.6
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 7.7e-295 1016.5 567 92.6
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 4.2e-293 1010.7 567 92.2
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.9e-285 985.3 546 92.3
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 9.8e-282 973.0 568 86.4
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 8.1e-252 873.6 566 78.6
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 1.8e-251 872.5 559 78.7
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 2.6e-250 868.6 566 78.6
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.2e-249 865.5 566 77.9
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 4.9e-249 864.4 569 77.7
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 8.4e-249 863.6 561 77.5
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-248 862.4 561 77.4
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.4e-248 862.1 554 78.0
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-248 861.7 561 77.4
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.2e-248 861.3 552 78.1
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.4e-248 860.9 552 77.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.1e-248 860.5 552 77.9
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 9.3e-248 860.1 555 76.4
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.6e-247 859.4 555 78.6
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 2.7e-247 858.6 555 76.8
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 6.6e-246 854.0 553 78.1
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 7.3e-245 850.5 569 75.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.1e-244 849.0 555 77.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 8.1e-244 847.0 572 74.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 8.1e-244 847.0 555 77.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 1.1e-243 846.7 563 76.2
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 9.0e-243 843.6 564 74.8
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.2e-242 843.2 555 76.8
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 3.4e-242 841.6 560 75.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 1.1e-240 836.6 622 69.5
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.4e-240 836.3 555 75.3
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.9e-240 835.9 567 74.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 3.2e-240 835.1 569 74.0
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 5.4e-240 834.3 561 74.7
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.2e-239 833.2 569 73.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.2e-239 833.2 555 75.0
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.2e-239 833.2 555 74.8
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-239 832.8 553 75.0
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.7e-239 832.0 553 75.0
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.6e-239 831.2 570 74.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 7.9e-239 830.5 562 73.8
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.8e-238 829.3 563 73.7
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.9e-238 828.2 578 73.7
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.1e-237 826.6 562 73.8
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 1.3e-236 823.2 550 74.9
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 2.1e-236 822.4 560 73.2
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 6.2e-236 820.8 567 72.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 6.2e-236 820.8 559 73.7
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.1e-236 820.5 560 73.9
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 2.4e-235 818.9 565 72.7
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.1e-235 818.5 560 73.8
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 3.1e-235 818.5 563 73.2
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 5.3e-235 817.8 569 72.1
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 5.3e-235 817.8 556 74.3
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 6.9e-235 817.4 562 74.6
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 2.6e-234 815.5 565 72.2
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.5e-234 814.7 582 71.1
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 7.6e-234 813.9 555 74.4
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.3e-233 813.1 559 72.5
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.7e-233 812.8 562 72.4
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.7e-233 812.8 553 75.2
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 1.7e-233 812.8 555 73.5
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.9e-233 812.0 558 72.8
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 4.9e-233 811.2 554 74.4
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.9e-233 811.2 557 74.0
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.9e-233 811.2 563 73.9
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 1.9e-232 809.3 541 76.0
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 3.2e-232 808.5 568 72.4
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 5.5e-232 807.7 554 73.6
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 7.1e-232 807.4 562 72.2
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.2e-231 806.6 558 72.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.5e-231 805.1 558 73.1
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.6e-231 804.7 564 72.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.6e-231 804.7 560 72.3
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 7.9e-231 803.9 583 69.1
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.0e-230 803.5 562 72.6
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.8e-230 802.7 562 72.6
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.3e-230 802.4 532 74.2
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.0e-230 802.0 571 71.6
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 1.3e-228 796.6 553 73.1
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.6e-228 796.2 558 71.9
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.1e-228 795.8 563 71.2
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 1.1e-227 793.5 601 69.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.4e-227 792.3 556 71.9
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 6.9e-227 790.8 552 70.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 6.9e-227 790.8 563 73.4
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 6.5e-225 784.3 555 71.5
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.1e-223 779.2 616 66.7
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.8e-222 776.2 405 96.3
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.3e-222 775.8 601 67.1
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 3.0e-222 775.4 602 67.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.9e-221 772.7 405 96.0
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.8e-220 768.8 551 71.0
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 6.3e-220 767.7 536 70.5
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.1e-219 766.9 558 69.4
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.3e-219 764.6 537 71.9
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-217 760.0 566 68.9
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.6e-215 753.1 551 67.5
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.1e-215 752.7 570 68.4
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.6e-215 751.9 405 94.3
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.4e-214 750.0 639 63.1
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.5e-213 746.5 517 71.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.2e-212 742.7 566 69.4
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 5.9e-210 734.6 549 67.4
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 2.2e-209 732.6 564 65.8
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 2.7e-207 725.7 550 64.7
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 2.9e-201 705.7 446 78.7
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 2.9e-201 705.7 586 61.9
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 6.5e-201 704.5 470 74.7
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.4e-195 686.8 554 64.3
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 9.4e-192 674.1 475 70.3
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 4.4e-189 665.2 559 59.2
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.8e-188 662.5 498 64.3
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 4.1e-187 658.7 476 70.8
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.7e-183 645.2 542 59.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.7e-177 626.7 558 58.4
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 4.4e-165 585.5 417 70.0
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 3.7e-156 555.8 359 79.1
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.4e-148 528.5 358 73.2
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.5e-141 507.3 558 48.2
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.1e-139 501.1 529 48.8
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.3e-127 461.1 327 69.1
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.4e-118 431.0 272 78.7
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 9.3e-115 418.3 333 64.6
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.2e-95 354.0 220 77.3
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-79 301.2 195 72.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.9e-75 287.7 197 77.2
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 8.6e-60 235.7 231 55.4
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.6e-53 214.9 177 65.0
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 4.0e-49 200.3 152 66.4
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-45 188.0 147 66.0
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-41 174.9 117 70.1
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 4.0e-41 173.7 186 53.8
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 4.1e-30 137.1 85 85.9
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.1e-22 112.5 94 60.6
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 2.7e-21 107.8 83 65.1
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.5e-21 107.5 71 66.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 6.0e-21 106.7 127 47.2
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 3.9e-20 104.0 93 57.0
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 5.6e-19 100.1 82 59.8
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.0e-08 65.1 64 51.6
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 2.4e-06 58.2 222 25.7


User provided reference genes

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