Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.0e-44 180.6 87 100.0
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 1.0e-36 156.4 87 86.2
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 1.0e-36 156.4 87 86.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.2e-32 142.9 87 79.3
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-32 142.9 87 81.6
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.1e-30 134.4 87 77.0
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.6e-29 131.0 89 77.5
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.6e-29 131.0 89 77.5
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 3.9e-28 127.9 87 73.6
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 7.3e-27 123.6 126 56.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 5.1e-20 100.9 56 80.4
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 9.9e-16 86.7 95 51.6
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 2.2e-15 85.5 93 46.2
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 4.9e-15 84.3 95 45.3
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-14 83.2 89 48.3
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.9e-14 82.4 90 48.9
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-14 82.0 89 47.2
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 4.2e-14 81.3 89 46.1
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 5.4e-14 80.9 95 42.1
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.2e-14 80.1 95 43.2
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 9.2e-14 80.1 94 46.8
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 4.6e-13 77.8 88 45.5
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 4.6e-13 77.8 89 44.9
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.6e-13 77.8 94 43.6
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 4.6e-13 77.8 94 43.6
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.0e-12 76.6 87 43.7
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 1.0e-12 76.6 85 43.5
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.0e-12 76.6 86 43.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.3e-12 76.3 93 45.2
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.3e-12 75.5 93 41.9
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-12 75.5 94 41.5
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.3e-12 75.5 84 42.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.0e-12 75.1 93 41.9
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.0e-12 75.1 89 44.9
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.0e-12 75.1 94 42.6
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.9e-12 74.7 87 47.1
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.9e-12 74.7 93 41.9
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 5.1e-12 74.3 93 41.9
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.6e-12 73.9 94 44.7
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 8.7e-12 73.6 90 50.0
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.7e-12 73.6 93 40.9
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.7e-12 73.6 90 45.6
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 8.7e-12 73.6 94 43.6
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 8.7e-12 73.6 85 47.1
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 80 45.0
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 1.5e-11 72.8 95 43.2
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.9e-11 72.4 90 44.4
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.9e-11 72.4 86 44.2
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 5.6e-11 70.9 94 43.6
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 5.6e-11 70.9 83 44.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 5.6e-11 70.9 90 41.1
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 5.6e-11 70.9 92 41.3
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 7.3e-11 70.5 87 42.5
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 7.3e-11 70.5 92 42.4
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 9.6e-11 70.1 90 45.6
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.6e-11 70.1 98 39.8
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.6e-11 70.1 64 51.6
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 9.6e-11 70.1 61 52.5
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.6e-10 69.3 95 43.2
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.6e-10 69.3 92 43.5
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-10 69.3 93 43.0
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.1e-10 68.9 92 44.6
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 2.1e-10 68.9 89 40.4
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.1e-10 68.9 97 43.3
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 2.1e-10 68.9 94 41.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-10 68.6 90 37.8
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.8e-10 68.6 87 43.7
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.8e-10 68.6 87 41.4
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.6e-10 68.2 90 37.8
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 3.6e-10 68.2 102 41.2
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 4.8e-10 67.8 89 42.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 6.2e-10 67.4 86 38.4
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 6.2e-10 67.4 87 42.5
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.2e-10 67.4 92 38.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 6.2e-10 67.4 85 38.8
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 8.1e-10 67.0 92 38.0
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.1e-10 67.0 92 38.0
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 8.1e-10 67.0 90 40.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 8.1e-10 67.0 94 38.3
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 8.1e-10 67.0 92 40.2
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 8.1e-10 67.0 89 42.7
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 38.0
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 47.1
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 46.0
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 1.1e-09 66.6 92 37.0
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.1e-09 66.6 87 41.4
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.4e-09 66.2 88 42.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.4e-09 66.2 101 39.6
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 92 42.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 2.4e-09 65.5 90 38.9
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.4e-09 65.5 89 37.1
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.4e-09 65.5 92 40.2
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.4e-09 65.5 85 41.2
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 3.1e-09 65.1 83 39.8
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 4.0e-09 64.7 92 42.4
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 6.9e-09 63.9 97 38.1
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 6.9e-09 63.9 87 47.1
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.9e-09 63.9 87 36.8
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 9.0e-09 63.5 79 41.8
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.5e-08 62.8 39 61.5
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.5e-08 62.8 57 49.1
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.5e-08 62.8 72 41.7
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.5e-08 62.8 73 39.7
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-08 62.4 77 42.9
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 2.0e-08 62.4 100 41.0
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 2.0e-08 62.4 88 39.8
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 2.0e-08 62.4 63 49.2
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 2.6e-08 62.0 57 49.1
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.6e-08 62.0 84 42.9
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.6e-08 62.0 84 42.9
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 2.6e-08 62.0 80 40.0
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 2.6e-08 62.0 85 37.6
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 2.6e-08 62.0 87 37.9
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.4e-08 61.6 86 40.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.4e-08 61.2 85 44.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.4e-08 61.2 85 44.7
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 4.4e-08 61.2 87 37.9
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 4.4e-08 61.2 82 41.5
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.4e-08 61.2 94 39.4
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 5.8e-08 60.8 93 37.6
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 5.8e-08 60.8 85 40.0
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 5.8e-08 60.8 42 61.9
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 5.8e-08 60.8 97 39.2
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 5.8e-08 60.8 95 36.8
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 7.6e-08 60.5 100 41.0
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 7.6e-08 60.5 85 42.4
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 7.6e-08 60.5 88 38.6
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.9e-08 60.1 49 53.1
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.9e-08 60.1 48 50.0
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-07 59.7 90 42.2
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-07 59.7 90 42.2
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-07 59.7 92 40.2
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.3e-07 59.7 75 37.3
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.7e-07 59.3 91 39.6
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 1.7e-07 59.3 95 41.1
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.7e-07 59.3 84 41.7
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 2.2e-07 58.9 82 40.2
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 2.2e-07 58.9 83 38.6
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.2e-07 58.9 75 42.7
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.2e-07 58.9 86 34.9
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 2.9e-07 58.5 89 42.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 2.9e-07 58.5 93 37.6
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 3.8e-07 58.2 41 61.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 4.9e-07 57.8 92 37.0
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 4.9e-07 57.8 47 51.1
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 6.4e-07 57.4 93 37.6
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 6.4e-07 57.4 77 40.3
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 8.4e-07 57.0 92 39.1
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-06 56.6 33 69.7
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.1e-06 56.6 33 69.7
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.1e-06 56.6 33 69.7
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.1e-06 56.6 33 69.7
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.1e-06 56.6 39 61.5
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.1e-06 56.6 85 40.0
AL6G13230 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 1.4e-06 56.2 82 43.9
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 86 39.5
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.4e-06 56.2 77 37.7
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.9e-06 55.8 39 59.0
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.9e-06 55.8 86 34.9
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-06 55.5 93 34.4
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 2.4e-06 55.5 82 39.0
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 2.4e-06 55.5 33 69.7
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.2e-06 55.1 83 41.0
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.2e-06 55.1 82 37.8
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 4.2e-06 54.7 97 35.1
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.1e-06 53.9 91 34.1
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 7.1e-06 53.9 53 50.9
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 7.1e-06 53.9 90 34.4
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 9.3e-06 53.5 42 59.5
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 9.3e-06 53.5 69 34.8
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.3e-06 53.5 100 34.0


User provided reference genes

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