Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 5.4e-69 264.2 136 100.0
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 4.6e-68 261.2 136 98.5
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 7.8e-68 260.4 136 97.8
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 7.8e-68 260.4 136 97.8
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.3e-67 258.8 136 97.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-67 258.8 136 97.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-67 258.8 136 97.8
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 5.6e-66 254.2 136 95.6
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 5.8e-63 244.2 136 94.1
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 6.0e-60 234.2 136 91.2
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 7.8e-60 233.8 136 88.2
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 7.8e-60 233.8 136 88.2
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.3e-59 233.0 136 91.2
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.7e-59 232.6 136 91.9
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.5e-58 229.6 136 86.8
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 4.0e-56 221.5 136 86.0
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 8.4e-54 213.8 136 80.9
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 7.8e-52 207.2 124 82.3
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 1.7e-51 206.1 126 82.5
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 1.7e-51 206.1 122 82.8
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.3e-51 205.7 120 85.0
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.3e-51 205.7 122 82.8
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.0e-51 205.3 121 82.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 5.1e-51 204.5 126 81.7
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 6.6e-51 204.1 124 81.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 6.6e-51 204.1 122 81.1
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 8.7e-51 203.8 124 80.6
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 8.7e-51 203.8 120 84.2
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 8.7e-51 203.8 121 82.6
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 8.7e-51 203.8 127 78.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 1.5e-50 203.0 126 79.4
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.9e-50 202.6 121 81.8
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 2.5e-50 202.2 126 80.2
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 2.5e-50 202.2 120 81.7
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 2.5e-50 202.2 120 81.7
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 3.3e-50 201.8 124 79.8
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.3e-50 201.4 117 82.9
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.6e-50 201.1 124 79.0
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 5.6e-50 201.1 124 79.0
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 7.3e-50 200.7 124 80.6
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 9.6e-50 200.3 134 80.6
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 9.6e-50 200.3 120 83.3
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 9.6e-50 200.3 124 78.2
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 1.6e-49 199.5 126 80.2
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 2.1e-49 199.1 117 82.9
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 3.6e-49 198.4 119 82.4
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 3.6e-49 198.4 124 76.6
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 4.8e-49 198.0 124 78.2
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 4.8e-49 198.0 120 80.0
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 6.2e-49 197.6 120 78.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.2e-49 197.6 121 80.2
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 8.1e-49 197.2 133 74.4
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 8.1e-49 197.2 117 82.9
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.4e-48 195.7 121 77.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.4e-48 195.7 121 77.7
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.4e-48 195.7 120 80.0
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 3.1e-48 195.3 120 78.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 4.0e-48 194.9 121 76.9
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 5.3e-48 194.5 134 73.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 5.3e-48 194.5 121 77.7
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 6.9e-48 194.1 123 76.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 9.0e-48 193.7 117 80.3
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 9.0e-48 193.7 124 77.4
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.2e-47 193.4 124 75.0
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-47 193.0 124 76.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.0e-47 192.6 120 76.7
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 2.0e-47 192.6 117 77.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.0e-47 192.6 120 79.2
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 3.4e-47 191.8 130 74.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.4e-47 191.8 125 76.8
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 3.4e-47 191.8 122 80.3
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.4e-47 191.8 121 78.5
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 4.5e-47 191.4 120 78.3
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.9e-47 190.3 119 76.5
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.3e-46 189.9 127 74.0
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-46 189.5 125 76.8
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.7e-46 189.5 124 72.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.2e-46 189.1 125 76.0
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.9e-46 188.7 121 76.9
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 3.8e-46 188.3 118 76.3
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.9e-46 188.0 125 76.0
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 6.4e-46 187.6 117 80.3
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 6.4e-46 187.6 130 73.1
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 6.4e-46 187.6 121 76.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.1e-45 186.8 119 76.5
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 1.9e-45 186.0 136 69.1
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 3.2e-45 185.3 123 74.0
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 4.2e-45 184.9 131 68.7
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 4.2e-45 184.9 117 75.2
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 5.4e-45 184.5 121 72.7
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.2e-44 183.3 119 76.5
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 2.1e-44 182.6 108 84.3
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 3.5e-44 181.8 126 69.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 4.6e-44 181.4 123 74.8
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.0e-44 181.0 105 81.9
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 6.0e-44 181.0 125 72.8
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 6.0e-44 181.0 121 72.7
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.0e-44 181.0 124 73.4
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.3e-43 179.9 124 74.2
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 4.3e-42 174.9 108 78.7
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 5.6e-42 174.5 126 69.0
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 2.8e-41 172.2 136 72.1
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 2.8e-41 172.2 136 72.1
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 4.8e-41 171.4 119 68.1
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 6.2e-41 171.0 122 72.1
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.8e-40 169.5 98 87.8
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.4e-40 169.1 99 85.9
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.0e-40 168.3 120 68.3
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 5.3e-40 167.9 105 75.2
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 9.0e-40 167.2 122 68.9
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 1.2e-39 166.8 119 71.4
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 2.6e-39 165.6 127 66.9
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 4.5e-39 164.9 122 70.5
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 7.6e-39 164.1 119 70.6
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 4.9e-38 161.4 98 79.6
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.1e-37 160.2 100 80.0
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.9e-37 159.5 98 78.6
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 7.1e-37 157.5 120 66.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.7e-36 155.6 90 80.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 5.1e-35 151.4 112 68.8
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.1e-35 151.4 95 78.9
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 6.7e-35 151.0 120 64.2
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 9.6e-34 147.1 123 65.0
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 5.3e-32 141.4 126 61.1
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 9.0e-32 140.6 128 59.4
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-31 140.2 86 77.9
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 1.2e-31 140.2 105 66.7
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.5e-31 139.8 101 70.3
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.5e-31 138.3 84 77.4
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 3.2e-29 132.1 107 61.7
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 4.2e-29 131.7 119 55.5
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.1e-29 131.0 102 66.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 7.1e-29 131.0 84 73.8
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 9.3e-29 130.6 124 58.1
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 2.7e-28 129.0 80 72.5
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 7.9e-28 127.5 117 53.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-27 125.6 84 75.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 8.7e-27 124.0 116 58.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-26 122.1 112 53.6
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 4.3e-26 121.7 125 56.8
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 9.7e-26 120.6 111 53.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 1.3e-25 120.2 114 57.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 3.7e-25 118.6 88 59.1
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.7e-25 118.6 118 53.4
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 8.2e-25 117.5 113 50.4
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.1e-24 117.1 117 50.4
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-24 115.5 115 52.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 6.9e-24 114.4 113 49.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 4.5e-23 111.7 129 49.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.0e-22 110.5 102 54.9
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.2e-21 105.5 131 45.0
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.2e-21 105.1 76 75.0
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.2e-21 105.1 61 85.2
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 4.1e-16 88.6 56 71.4
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 4.4e-10 68.6 77 48.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 8.2e-09 64.3 35 88.6
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 4.5e-07 58.5 66 43.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 7.7e-07 57.8 111 36.9
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 2.2e-06 56.2 111 33.3
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 2.9e-06 55.8 111 34.2
TPR.G6029 Trifolium pratense HOM05D004009 ORTHO05D004617 6.5e-06 54.7 111 35.1
arahy.Tifrunner.gnm1.ann1.Q786Q7 Arachis hypogaea HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 35.1
arahy.Tifrunner.gnm1.ann1.WBP6JB Arachis hypogaea HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 35.1
Lj2g0025881 Lotus japonicus HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 35.1
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 8.5e-06 54.3 111 31.5


User provided reference genes

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