Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g15770 Schrenkiella parvula HOM05D004534 ORTHO05D005413 1.6e-219 765.8 377 100.0
Thhalv10002577m.g Eutrema salsugineum HOM05D004534 ORTHO05D005413 7.7e-198 693.7 377 89.9
BolC3t19273H Brassica oleracea HOM05D004534 ORTHO05D005413 1.0e-197 693.3 378 90.5
BcaC01g01956 Brassica carinata HOM05D004534 ORTHO05D005413 2.2e-197 692.2 378 90.5
C03p70180 Brassica napus HOM05D004534 ORTHO05D005413 2.2e-197 692.2 378 90.5
BraA06t25216Z Brassica rapa HOM05D004534 ORTHO05D005413 2.2e-197 692.2 378 91.0
A06p21280 Brassica napus HOM05D004534 ORTHO05D005413 5.0e-197 691.0 378 90.7
AL5G24380 Arabidopsis lyrata HOM05D004534 ORTHO05D005413 1.1e-193 679.9 374 89.3
CARHR149920 Cardamine hirsuta HOM05D004534 ORTHO05D005413 5.3e-191 671.0 377 87.5
Aa31LG4G14970 Aethionema arabicum HOM05D004534 ORTHO05D005413 1.1e-188 663.3 373 87.4
AT3G45740 Arabidopsis thaliana HOM05D004534 ORTHO05D005413 4.2e-188 661.4 377 87.3
THA.LOC104814850 Tarenaya hassleriana HOM05D004534 ORTHO05D005413 5.7e-169 597.8 386 76.7
BcaB01g01071 Brassica carinata HOM05D004534 ORTHO05D005413 2.0e-166 589.3 308 92.9
Cpa.g.sc139.34 Carica papaya HOM05D004534 ORTHO05D005413 1.5e-153 546.6 384 69.8
Lj3g0025326 Lotus japonicus HOM05D004534 ORTHO05D005413 2.6e-145 519.2 351 71.5
Ciclev10030338m.g Citrus clementina HOM05D004534 ORTHO05D005413 5.8e-145 518.1 362 69.9
PGR102G1844 Punica granatum HOM05D004534 ORTHO05D005413 5.8e-145 518.1 367 67.6
Lalb_Chr24g0394391 Lupinus albus HOM05D004534 ORTHO05D005413 9.8e-145 517.3 353 69.4
GSVIVG01025090001 Vitis vinifera HOM05D004534 ORTHO05D005413 9.8e-145 517.3 378 67.5
Atru.chr3.3749 Acer truncatum HOM05D004534 ORTHO05D005413 1.3e-144 516.9 358 69.8
arahy.Tifrunner.gnm1.ann1.NM19P7 Arachis hypogaea HOM05D004534 ORTHO05D005413 3.7e-144 515.4 338 71.6
Psat5g281360 Pisum sativum HOM05D004534 ORTHO05D005413 4.9e-144 515.0 378 66.4
arahy.Tifrunner.gnm1.ann1.AW7LWX Arachis hypogaea HOM05D004534 ORTHO05D005413 8.3e-144 514.2 338 71.9
Glyma.13G330000 Glycine max HOM05D004534 ORTHO05D005413 4.1e-143 511.9 357 67.8
MD11G1120100 Malus domestica HOM05D004534 ORTHO05D005413 9.2e-143 510.8 383 67.1
Phvul.L001232 Phaseolus vulgaris HOM05D004534 ORTHO05D005413 1.6e-142 510.0 357 68.9
TPR.G11635 Trifolium pratense HOM05D004534 ORTHO05D005413 1.6e-142 510.0 367 68.7
Cfa011397 Carpinus fangiana HOM05D004534 ORTHO05D005413 1.7e-141 506.5 361 69.0
Medtr2g095830 Medicago truncatula HOM05D004534 ORTHO05D005413 2.3e-141 506.1 368 67.7
MELO3C026849.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.6e-141 504.6 353 68.0
HanXRQChr08g0219701 Helianthus annuus HOM05D004534 ORTHO05D005413 1.5e-140 503.4 365 68.2
TWI31G1398 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 2.5e-140 502.7 353 69.4
Dinv32819 Davidia involucrata HOM05D004534 ORTHO05D005413 4.3e-140 501.9 374 66.8
RcHm_v2.0_Chr5g0061761 Rosa chinensis HOM05D004534 ORTHO05D005413 7.3e-140 501.1 355 68.5
FvH4_3g34110 Fragaria vesca HOM05D004534 ORTHO05D005413 9.5e-140 500.7 381 65.1
Sed0013966 Sechium edule HOM05D004534 ORTHO05D005413 1.6e-139 500.0 370 65.9
Nn2g10612 Nelumbo nucifera HOM05D004534 ORTHO05D005413 2.1e-139 499.6 357 67.8
CANSAT54G1456 Cannabis sativa HOM05D004534 ORTHO05D005413 2.8e-139 499.2 378 64.8
FAN11G3381 Fragaria x ananassa HOM05D004534 ORTHO05D005413 8.1e-139 497.7 381 64.8
Lsat_1_v5_gn_8_20980 Lactuca sativa HOM05D004534 ORTHO05D005413 8.1e-139 497.7 369 64.8
Prupe.2G220600 Prunus persica HOM05D004534 ORTHO05D005413 8.1e-139 497.7 361 66.5
Manes.11G138500 Manihot esculenta HOM05D004534 ORTHO05D005413 1.1e-138 497.3 382 63.9
GSVIVG01016358001 Vitis vinifera HOM05D004534 ORTHO05D005413 1.4e-138 496.9 359 68.0
Ciclev10031838m.g Citrus clementina HOM05D004534 ORTHO05D005413 1.8e-138 496.5 356 66.9
CSS0009646 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 5.2e-138 495.0 355 67.6
CsaV3_1G012750 Cucumis sativus L. HOM05D004534 ORTHO05D005413 6.8e-138 494.6 366 65.8
QL01p035546 Quercus lobata HOM05D004534 ORTHO05D005413 6.8e-138 494.6 371 66.8
Hma1.2p1_2042F.1_g312230 Hydrangea macrophylla HOM05D004534 ORTHO05D005413 8.9e-138 494.2 370 67.3
PGR044G2491 Punica granatum HOM05D004534 ORTHO05D005413 8.9e-138 494.2 353 67.1
Thecc.09G335300 Theobroma cacao HOM05D004534 ORTHO05D005413 1.5e-137 493.4 374 67.1
Cfa001577 Carpinus fangiana HOM05D004534 ORTHO05D005413 2.0e-137 493.0 357 66.7
ECA233G2770 Erigeron canadensis HOM05D004534 ORTHO05D000452 5.8e-137 491.5 343 68.8
Dinv31374 Davidia involucrata HOM05D004534 ORTHO05D005413 7.5e-137 491.1 344 69.2
DCAR_018857 Daucus carota HOM05D004534 ORTHO05D005413 1.7e-136 490.0 340 69.4
Potri.008G045700 Populus trichocarpa HOM05D004534 ORTHO05D005413 6.4e-136 488.0 356 66.0
Ca_01369_v3 Cicer arietinum L. HOM05D004534 ORTHO05D005413 1.4e-135 486.9 338 68.3
RcHm_v2.0_Chr1g0364391 Rosa chinensis HOM05D004534 ORTHO05D005413 1.4e-135 486.9 358 67.6
Actinidia03016 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.4e-135 486.1 363 66.7
Gohir.D08G009000 Gossypium hirsutum HOM05D004534 ORTHO05D005413 5.4e-135 485.0 381 65.9
PSO339G4951 Papaver somniferum HOM05D004534 ORTHO05D005413 5.4e-135 485.0 353 67.7
Peaxi162Scf00072g00025 Petunia axillaris HOM05D004534 ORTHO05D005413 5.4e-135 485.0 340 68.2
ATR0582G124 Amborella trichopoda HOM05D004534 ORTHO05D005413 9.2e-135 484.2 354 66.7
FAN21G3213 Fragaria x ananassa HOM05D004534 ORTHO05D005413 9.2e-135 484.2 391 62.4
PSO384G4947 Papaver somniferum HOM05D004534 ORTHO05D005413 9.2e-135 484.2 351 67.2
Gohir.A08G000096 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.5e-134 482.3 381 65.6
Potri.010G216000 Populus trichocarpa HOM05D004534 ORTHO05D005413 4.6e-134 481.9 360 65.8
CiPaw.01G277800 Carya illinoinensis HOM05D004534 ORTHO05D005413 7.8e-134 481.1 357 65.3
Nitab4.5_0004774g0020 Nicotiana tabacum HOM05D004534 ORTHO05D005413 7.8e-134 481.1 364 65.1
Rhsim01G0222900 Rhododendron simsii HOM05D004534 ORTHO05D005413 1.3e-133 480.3 354 66.1
VMungo1080G0465 Vigna mungo HOM05D004534 ORTHO05D005413 2.3e-133 479.6 357 66.4
Nitab4.5_0000270g0130 Nicotiana tabacum HOM05D004534 ORTHO05D005413 6.6e-133 478.0 344 66.9
Thecc.10G065400 Theobroma cacao HOM05D004534 ORTHO05D005413 1.1e-132 477.2 346 66.5
CSS0028612 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 1.5e-132 476.9 388 61.9
Solyc06g075540.3 Solanum lycopersicum HOM05D004534 ORTHO05D005413 1.9e-132 476.5 379 62.0
Gorai.009G315700 Gossypium raimondii HOM05D004534 ORTHO05D005413 4.3e-132 475.3 363 63.4
Aqoxy4G03153 Aquilegia oxysepala HOM05D004534 ORTHO05D005413 5.6e-132 474.9 376 63.8
Migut.F02016 Erythranthe guttata HOM05D004534 ORTHO05D005413 7.3e-132 474.6 378 63.0
Haze_16951 Corylus avellana HOM05D004534 ORTHO05D005413 9.5e-132 474.2 375 63.5
PGSC0003DMG402006611 Solanum tuberosum HOM05D004534 ORTHO05D005413 9.5e-132 474.2 379 62.0
HPP92_003600 Vanilla planifolia HOM05D004534 ORTHO05D005413 9.5e-132 474.2 354 64.1
COL.COLO4_23775 Corchorus olitorius HOM05D004534 ORTHO05D005413 2.8e-131 472.6 343 66.2
Gohir.D05G298500 Gossypium hirsutum HOM05D004534 ORTHO05D005413 3.6e-131 472.2 363 63.1
CAN.G394.3 Capsicum annuum HOM05D004534 ORTHO05D005413 6.2e-131 471.5 372 63.2
FAN06G4936 Fragaria x ananassa HOM05D004534 ORTHO05D005413 6.2e-131 471.5 387 61.8
Zm00001eb397220 Zea mays HOM05D004534 ORTHO05D005413 8.1e-131 471.1 371 61.5
MSTRG.18620 Avicennia marina HOM05D004534 ORTHO05D005413 3.1e-130 469.2 338 64.8
TWI38G2053 Tripterygium wilfordii HOM05D004534 ORTHO05D005413 1.5e-129 466.8 345 66.7
Atru.chr12.616 Acer truncatum HOM05D004534 ORTHO05D005413 2.0e-129 466.5 385 61.8
vmacro14490 Vaccinium macrocarpon HOM05D004534 ORTHO05D005413 5.8e-129 464.9 440 56.8
Os03g0284500 Oryza sativa ssp. japonica HOM05D004534 ORTHO05D005413 7.6e-129 464.5 373 60.3
Migut.D02166 Erythranthe guttata HOM05D004534 ORTHO05D005413 6.4e-128 461.5 369 63.4
Peaxi162Scf01024g00128 Petunia axillaris HOM05D004534 ORTHO05D005413 7.1e-127 458.0 391 61.6
unitig_37.g12680 Utricularia gibba HOM05D004534 ORTHO05D005413 2.3e-125 453.0 338 63.6
Cc01_g11880 Coffea canephora HOM05D004534 ORTHO05D005413 8.6e-125 451.1 342 63.5
MD07G1181700 Malus domestica HOM05D004534 ORTHO05D005413 1.9e-124 449.9 330 65.5
CDE04G1344 Ceratophyllum demersum HOM05D004534 ORTHO05D005413 4.0e-122 442.2 389 59.4
EL10Ac2g03539 Beta vulgaris HOM05D004534 ORTHO05D005413 5.8e-121 438.3 360 60.3
CsaV3_5G026040 Cucumis sativus L. HOM05D004534 ORTHO05D005413 1.3e-120 437.2 361 61.8
FAN25G2491 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.7e-120 436.8 409 56.5
EL10Ac7g15886 Beta vulgaris HOM05D004534 ORTHO05D005413 3.8e-120 435.6 408 56.6
Hund18962 Selenicereus undatus HOM05D004534 ORTHO05D005413 1.9e-119 433.3 355 60.6
CSS0050279 Camellia sinensis var. sinensis HOM05D004534 ORTHO05D005413 3.5e-118 429.1 360 61.7
Sabra08G0032000 Salix brachista HOM05D004534 ORTHO05D005413 7.8e-118 427.9 365 58.1
FAN03G3228 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.3e-117 427.2 387 57.9
Nitab4.5_0000561g0030 Nicotiana tabacum HOM05D004534 ORTHO05D005413 5.1e-117 425.2 358 60.6
AUR62009701 Chenopodium quinoa HOM05D004534 ORTHO05D005413 2.8e-115 419.5 339 61.1
Gorai.004G002200 Gossypium raimondii HOM05D004534 ORTHO05D005413 6.2e-115 418.3 335 64.5
FAN01G1783 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.1e-114 417.5 386 57.0
Manes.10G040600 Manihot esculenta HOM05D004534 ORTHO05D005413 7.6e-113 411.4 372 56.2
Carub.0005s1159 Capsella rubella HOM05D004534 ORTHO05D005413 9.9e-113 411.0 231 86.6
Duzib106G1068 Durio zibethinus HOM05D004534 ORTHO05D005413 1.7e-112 410.2 372 57.3
Ah.10g033090 Amaranthus hybridus HOM05D004534 ORTHO05D005413 2.2e-112 409.8 361 57.1
Lj1A926G31 Lonicera japonica HOM05D004534 ORTHO05D005413 3.8e-112 409.1 350 60.9
Oeu055059.2 Olea europaea HOM05D004534 ORTHO05D005413 2.4e-111 406.4 322 61.8
QL08p057247 Quercus lobata HOM05D004534 ORTHO05D005413 1.2e-110 404.1 542 43.5
Sc06g0008140 Simmondsia chinensis HOM05D004534 ORTHO05D005413 2.1e-110 403.3 378 55.6
MELO3C025495.2 Cucumis melo HOM05D004534 ORTHO05D005413 6.0e-110 401.7 376 57.7
Lj1A180G32 Lonicera japonica HOM05D004534 ORTHO05D005413 1.7e-109 400.2 301 64.8
FAN06G3998 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.5e-108 397.1 506 46.2
Sabra10G0167000 Salix brachista HOM05D004534 ORTHO05D005413 4.3e-108 395.6 369 56.1
AUR62036245 Chenopodium quinoa HOM05D004534 ORTHO05D005413 3.6e-107 392.5 353 57.5
FAN16G0790 Fragaria x ananassa HOM05D004534 ORTHO05D005413 5.8e-105 385.2 378 54.8
Oeu051854.2 Olea europaea HOM05D004534 ORTHO05D005413 8.4e-104 381.3 402 52.0
Nitab4.5_0000830g0040 Nicotiana tabacum HOM05D004534 ORTHO05D005413 1.4e-103 380.6 356 57.6
Gohir.A05G298800 Gossypium hirsutum HOM05D004534 ORTHO05D005413 6.7e-101 371.7 273 64.1
TAR633G1279 Trochodendron aralioides HOM05D004534 ORTHO05D005413 1.1e-98 364.4 244 72.1
Prupe.6G090300 Prunus persica HOM05D004534 ORTHO05D005413 1.5e-97 360.5 270 67.0
Mapoly0029s0123 Marchantia polymorpha HOM05D004534 ORTHO05D005413 4.6e-94 349.0 389 48.3
AUR62036013 Chenopodium quinoa HOM05D004534 ORTHO05D005413 1.3e-93 347.4 376 50.3
Pp3c16_8740 Physcomitrium patens HOM05D004534 ORTHO05D005413 1.8e-93 347.1 388 45.9
COL.COLO4_18394 Corchorus olitorius HOM05D004534 ORTHO05D005413 3.0e-93 346.3 294 60.5
CiPaw.13G104100 Carya illinoinensis HOM05D004534 ORTHO05D005413 4.3e-92 342.4 275 62.5
FvH4_7g20500 Fragaria vesca HOM05D004534 ORTHO05D005413 4.5e-89 332.4 246 65.9
Sed0004393 Sechium edule HOM05D004534 ORTHO05D005413 8.5e-88 328.2 342 52.6
SGA_v2.0_scaffold61G21215 Striga asiatica HOM05D004534 ORTHO05D005413 1.5e-84 317.4 238 63.4
SMO118G0317 Selaginella moellendorffii HOM05D004534 ORTHO05D005413 3.1e-82 309.7 357 46.5
Ciclev10032311m.g Citrus clementina HOM05D004534 ORTHO05D005413 4.5e-73 279.3 278 54.0
Sopen06g031920 Solanum pennellii HOM05D004534 ORTHO05D005413 5.9e-73 278.9 185 70.3
Cc09_g02390 Coffea canephora HOM05D004534 ORTHO05D005413 3.9e-69 266.2 199 66.8
MBI18_g24932_MAGBIO Magnolia biondii HOM05D004534 ORTHO05D005413 1.5e-68 264.2 523 33.7
ClCG09G020370 Citrullus lanatus HOM05D004534 ORTHO05D005413 7.4e-68 261.9 364 43.4
FAN10G0821 Fragaria x ananassa HOM05D004534 ORTHO05D005413 1.2e-65 254.6 347 43.2
AagrBONN_evm.TU.Sc2ySwM_228.5090 Anthoceros agrestis HOM05D004534 ORTHO05D005413 4.1e-58 229.6 191 55.0
CBR_g24062 Chara braunii HOM05D004534 ORTHO05D005413 4.2e-55 219.5 310 39.7
Cpa.g.sc1.278 Carica papaya HOM05D004534 ORTHO05D005413 6.8e-53 212.2 259 45.9
Cfa024137 Carpinus fangiana HOM05D004534 ORTHO05D005413 6.3e-43 179.1 397 32.7
Nitab4.5_0000830g0060 Nicotiana tabacum HOM05D004534 ORTHO05D005413 3.3e-39 166.8 172 51.7
Cre01.g013250 Chlamydomonas reinhardtii HOM05D004534 ORTHO05D005413 4.3e-39 166.4 341 30.8
Cc09_g02400 Coffea canephora HOM05D004534 ORTHO05D005413 2.3e-37 160.6 122 67.2
PRCOL_00005152 Prasinoderma coloniale HOM05D004534 ORTHO05D005413 6.8e-37 159.1 305 33.1
AUR62035991 Chenopodium quinoa HOM05D004534 ORTHO05D005413 9.8e-28 128.6 114 54.4
VMungo0464G2039 Vigna mungo HOM05D004534 ORTHO05D005413 1.6e-25 121.3 93 62.4
Glyma.15G044000 Glycine max HOM05D004534 ORTHO05D005413 9.8e-20 102.1 84 61.9
RcHm_v2.0_Chr1g0364361 Rosa chinensis HOM05D003391 ORTHO05D005413 6.6e-16 89.4 56 69.6
RcHm_v2.0_Chr5g0046071 Rosa chinensis HOM05D004534 ORTHO05D005413 1.2e-14 85.1 44 84.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.6e-14 83.6 63 58.7
Nitab4.5_0000830g0070 Nicotiana tabacum HOM05D004534 ORTHO05D005413 2.6e-12 77.4 43 81.4
Actinidia38238 Actinidia chinensis HOM05D004534 ORTHO05D005413 2.7e-09 67.4 140 36.4
AagrBONN_evm.TU.Sc2ySwM_117.2640 Anthoceros agrestis HOM05D012537 ORTHO05D009535 1.3e-08 65.1 43 60.5


User provided reference genes

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