Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 3.9e-181 638.3 382 100.0
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 2.3e-149 532.7 383 77.3
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 3.3e-148 528.9 385 83.1
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 1.6e-147 526.6 394 81.0
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.7e-144 516.5 383 79.1
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 6.5e-144 514.6 383 79.1
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 9.6e-140 500.7 395 77.2
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 2.9e-136 489.2 395 70.9
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 8.4e-136 487.6 368 78.0
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 2.5e-135 486.1 384 72.7
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 2.5e-135 486.1 384 72.7
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 7.1e-135 484.6 384 72.4
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.2e-134 483.8 393 77.1
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 1.6e-131 473.4 349 78.8
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 1.8e-130 469.9 384 71.4
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 9.1e-106 387.9 414 60.4
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 1.0e-96 357.8 289 75.8
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 7.2e-95 351.7 383 57.2
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 2.3e-80 303.5 387 51.4
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.3e-40 171.4 405 37.3
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 5.1e-40 169.5 341 39.3
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 5.1e-40 169.5 332 36.4
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.5e-39 167.2 341 37.8
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 7.4e-39 165.6 419 34.4
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 9.6e-39 165.2 378 37.6
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 1.6e-38 164.5 348 38.5
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.8e-37 161.0 347 36.0
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 5.3e-37 159.5 433 32.3
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 9.0e-37 158.7 373 34.6
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-36 157.1 350 35.1
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 5.8e-36 156.0 314 36.6
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 2.9e-35 153.7 349 37.8
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 2.9e-35 153.7 339 36.3
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 6.4e-35 152.5 364 35.4
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 1.1e-34 151.8 350 35.1
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 1.1e-34 151.8 340 35.9
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 4.2e-34 149.8 348 35.3
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 4.6e-33 146.4 219 42.0
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.3e-32 144.1 330 37.6
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 3.0e-32 143.7 417 38.4
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 3.0e-32 143.7 416 31.2
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 1.5e-31 141.4 434 33.6
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 1.9e-31 141.0 335 34.9
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 7.4e-31 139.0 377 38.2
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 8.1e-30 135.6 419 35.1
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 1.1e-29 135.2 446 28.5
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.8e-29 134.4 439 29.6
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 7.6e-28 129.0 430 36.0
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 2.9e-27 127.1 463 29.2
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 1.9e-26 124.4 366 34.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.5e-26 124.0 201 39.8
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 2.3e-24 117.5 356 32.3
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.3e-24 117.5 428 34.1
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 3.9e-24 116.7 402 30.8
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 1.1e-23 115.2 437 28.8
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 1.9e-23 114.4 415 31.8
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.5e-23 114.0 317 33.4
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 9.6e-23 112.1 370 31.1
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 3.1e-21 107.1 364 31.3
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 5.3e-21 106.3 366 31.4
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 9.0e-21 105.5 464 29.5
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 9.0e-21 105.5 395 29.6
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 1.2e-20 105.1 291 39.5
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.0e-19 102.1 369 28.7
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.3e-19 101.7 456 29.6
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 1.7e-19 101.3 414 28.3
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 3.8e-19 100.1 406 28.1
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 6.5e-19 99.4 159 37.7
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 8.4e-19 99.0 481 27.2
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 1.9e-18 97.8 396 28.0
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 1.9e-18 97.8 407 29.0
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 9.3e-18 95.5 383 28.7
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.2e-17 95.1 218 35.8
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.6e-17 94.7 159 37.1
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 2.7e-17 94.0 288 32.3
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.0e-16 92.0 359 29.5
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 3.9e-16 90.1 338 29.0
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.1e-15 88.6 403 29.0
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 1.1e-15 88.6 310 28.1
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.9e-15 87.8 307 30.9
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 3.3e-15 87.0 437 26.3
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 7.4e-15 85.9 488 27.0
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 9.7e-15 85.5 352 31.8
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 6.3e-14 82.8 372 27.7
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.1e-13 82.0 331 26.6
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 1.8e-13 81.3 423 26.0
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 1.8e-13 81.3 406 27.3
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 4.1e-13 80.1 289 29.4
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 6.9e-13 79.3 546 23.3
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.2e-12 78.6 525 24.4
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.5e-12 76.6 221 30.8
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.7e-11 74.7 221 30.3
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 2.9e-11 73.9 221 29.9
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 6.5e-11 72.8 175 33.7
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 6.5e-11 72.8 448 26.3
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 6.5e-11 72.8 175 37.7
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 8.5e-11 72.4 177 37.3
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.1e-10 72.0 180 37.8
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.1e-10 72.0 237 30.8
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 1.4e-10 71.6 104 38.5
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 9.4e-10 68.9 185 33.0
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 9.4e-10 68.9 187 32.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.2e-09 68.6 100 41.0
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.6e-09 68.2 364 25.8
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 4.6e-09 66.6 170 37.1
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 4.6e-09 66.6 170 37.1
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.6e-09 66.6 433 23.6
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 6.1e-09 66.2 265 29.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 3.9e-08 63.5 94 39.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.9e-08 63.5 117 37.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.7e-08 62.8 112 34.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-07 61.6 106 35.8
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.5e-07 61.6 125 34.4
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 2.0e-07 61.2 302 25.2
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 3.3e-07 60.5 91 42.9
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 3.3e-07 60.5 156 30.8
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 4.3e-07 60.1 156 30.8
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 5.7e-07 59.7 67 49.3
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 9.7e-07 58.9 129 37.2
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 9.7e-07 58.9 107 35.5
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 9.7e-07 58.9 332 26.8
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.3e-06 58.5 121 30.6
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.7e-06 58.2 156 30.1
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.2e-06 57.8 97 36.1
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 2.2e-06 57.8 101 35.6
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 2.8e-06 57.4 106 35.8
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.7e-06 57.0 124 35.5
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.8e-06 56.6 107 33.6
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 4.8e-06 56.6 109 35.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 6.3e-06 56.2 397 24.4
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 8.2e-06 55.8 117 34.2
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 8.2e-06 55.8 117 34.2
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 8.2e-06 55.8 88 35.2
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 8.2e-06 55.8 119 36.1


User provided reference genes

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