Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 4.5e-92 341.3 174 100.0
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.7e-83 312.8 175 92.0
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 4.9e-83 311.2 174 91.4
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.3e-80 303.1 177 88.1
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 3.0e-80 302.0 174 87.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 2.5e-79 298.9 179 87.2
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 2.8e-78 295.4 174 87.9
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 2.8e-78 295.4 174 87.9
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 6.2e-78 294.3 174 87.4
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 1.8e-77 292.7 174 86.8
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 6.9e-77 290.8 166 87.3
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 3.4e-76 288.5 164 88.4
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 6.0e-73 277.7 182 79.7
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 7.9e-73 277.3 171 81.3
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 1.3e-72 276.6 175 80.6
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.5e-71 273.1 171 80.1
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 1.5e-71 273.1 176 79.5
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.9e-71 272.7 177 78.0
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.5e-71 272.3 177 78.0
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 3.3e-71 271.9 170 81.8
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 4.3e-71 271.6 178 79.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 5.7e-71 271.2 174 78.2
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 5.7e-71 271.2 177 78.0
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 5.7e-71 271.2 177 76.3
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 9.7e-71 270.4 177 77.4
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 9.7e-71 270.4 168 81.0
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 1.3e-70 270.0 166 82.5
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.6e-70 269.6 177 78.5
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 2.2e-70 269.2 177 76.8
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 2.2e-70 269.2 169 79.3
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.2e-70 269.2 170 78.2
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.2e-70 269.2 172 79.7
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 2.8e-70 268.9 167 82.0
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 3.7e-70 268.5 169 80.5
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 3.7e-70 268.5 177 77.4
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 3.7e-70 268.5 170 80.0
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 4.8e-70 268.1 169 79.9
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 8.2e-70 267.3 170 78.2
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 8.2e-70 267.3 169 80.5
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.1e-69 266.9 166 80.7
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.4e-69 266.5 177 75.1
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 1.8e-69 266.2 172 77.9
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 1.8e-69 266.2 167 79.6
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 1.8e-69 266.2 177 76.8
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 2.4e-69 265.8 170 79.4
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 2.4e-69 265.8 168 79.2
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 2.4e-69 265.8 168 79.2
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 4.1e-69 265.0 174 75.9
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 5.3e-69 264.6 166 80.7
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 6.9e-69 264.2 180 76.1
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 6.9e-69 264.2 175 77.7
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.2e-68 263.5 163 82.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 1.5e-68 263.1 166 80.1
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 2.6e-68 262.3 173 78.6
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 3.4e-68 261.9 170 77.6
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.4e-68 261.9 175 77.7
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 4.5e-68 261.5 165 81.2
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 5.9e-68 261.2 169 77.5
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 7.6e-68 260.8 160 80.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.0e-67 260.4 174 77.0
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.0e-67 260.4 172 76.2
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.0e-67 260.4 165 80.0
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.2e-67 259.2 178 74.2
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.2e-67 259.2 167 77.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 2.9e-67 258.8 171 76.0
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 3.8e-67 258.5 175 72.6
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 3.8e-67 258.5 175 76.0
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 6.5e-67 257.7 177 74.0
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 8.5e-67 257.3 166 80.1
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.1e-66 256.9 169 76.3
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.9e-66 256.1 174 74.7
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.9e-66 256.1 143 88.8
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.5e-66 255.8 170 78.2
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 3.2e-66 255.4 168 78.6
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 1.2e-65 253.4 161 79.5
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 1.6e-65 253.1 166 75.9
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 2.1e-65 252.7 143 88.1
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 3.6e-65 251.9 169 77.5
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 3.6e-65 251.9 140 87.9
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.6e-65 251.5 178 71.3
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.8e-64 249.6 145 82.8
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 1.8e-64 249.6 149 83.9
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.8e-64 249.6 149 83.9
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 2.3e-64 249.2 140 88.6
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 2.3e-64 249.2 169 75.1
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.3e-64 249.2 174 72.4
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 2.3e-64 249.2 212 64.6
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 2.3e-64 249.2 156 80.1
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 3.9e-64 248.4 167 77.2
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 8.7e-64 247.3 158 77.2
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.1e-63 246.9 163 79.1
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.1e-63 246.9 203 65.0
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 2.5e-63 245.7 177 70.1
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 1.3e-62 243.4 154 79.2
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.7e-62 243.0 173 70.5
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.2e-62 242.7 166 74.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 2.8e-62 242.3 151 80.1
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 4.8e-62 241.5 176 71.0
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 8.2e-62 240.7 150 81.3
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 8.2e-62 240.7 141 82.3
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 1.8e-61 239.6 175 71.4
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.8e-61 239.6 164 73.2
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 2.4e-61 239.2 167 73.7
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 4.1e-61 238.4 170 74.1
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 1.5e-60 236.5 149 77.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 2.0e-60 236.1 169 72.2
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 5.9e-60 234.6 160 75.0
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 7.7e-60 234.2 160 75.6
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.0e-59 233.8 179 67.6
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 5.5e-58 228.0 136 83.1
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 7.2e-58 227.6 174 66.7
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.3e-56 222.6 139 79.9
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 4.4e-55 218.4 168 67.9
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 1.3e-54 216.9 168 64.9
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 4.8e-54 214.9 157 72.0
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.1e-53 213.8 150 74.0
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 1.1e-50 203.8 137 72.3
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.1e-50 203.8 136 72.8
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 1.1e-45 187.2 167 55.7
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.7e-43 179.9 171 59.6
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 2.0e-39 166.4 139 59.7
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 3.7e-38 162.2 122 68.9
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.8e-38 161.8 122 67.2
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 3.5e-36 155.6 122 65.6
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 3.8e-35 152.1 82 86.6
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 6.5e-35 151.4 122 63.9
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 1.2e-33 147.1 122 62.3
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 6.1e-33 144.8 122 61.5
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 1.8e-32 143.3 112 65.2
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 4.0e-32 142.1 155 53.5
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 2.0e-31 139.8 101 66.3
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 7.5e-31 137.9 136 52.9
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 1.4e-29 133.7 148 47.3
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.7e-27 126.7 101 66.3
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 2.3e-27 126.3 91 73.6
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 2.9e-27 125.9 85 74.1
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 6.5e-27 124.8 79 77.2
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 8.6e-27 124.4 90 74.4
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 1.1e-26 124.0 98 68.4
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.1e-26 124.0 109 63.3
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.5e-26 123.6 84 73.8
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 7.2e-26 121.3 89 74.2
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 3.0e-24 115.9 88 64.8
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 1.5e-23 113.6 82 63.4
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.7e-22 110.2 101 61.4
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.4e-21 107.1 95 61.1
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 7.0e-21 104.8 70 77.1
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.2e-20 104.0 73 68.5
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.3e-19 99.8 77 67.5
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 2.9e-19 99.4 69 66.7
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.6e-19 98.2 67 71.6
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 4.3e-18 95.5 89 61.8
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.3e-18 95.5 137 46.0
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 3.6e-17 92.4 56 69.6
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 8.3e-14 81.3 82 54.9
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.1e-13 79.0 62 62.9
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 1.7e-11 73.6 122 39.3
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 5.0e-11 72.0 45 75.6
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 3.3e-10 69.3 106 44.3
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.6e-09 67.0 44 75.0
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 2.8e-09 66.2 37 86.5
FAN15G2450 Fragaria x ananassa HOM05D004245 ORTHO05D004783 3.6e-09 65.9 49 71.4
FAN27G0770 Fragaria x ananassa HOM05D004245 ORTHO05D004783 3.6e-09 65.9 49 71.4
SalBow8G3107 Salvia bowleyana HOM05D004245 ORTHO05D004783 6.2e-09 65.1 57 61.4
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.3e-08 63.2 57 59.6
arahy.Tifrunner.gnm1.ann1.20SHP8 Arachis hypogaea HOM05D004245 ORTHO05D004783 7.5e-07 58.2 30 90.0
arahy.Tifrunner.gnm1.ann1.3ZQ4SN Arachis hypogaea HOM05D004245 ORTHO05D004783 7.5e-07 58.2 30 90.0
unitig_85.g27240 Utricularia gibba HOM05D004245 ORTHO05D004783 1.7e-06 57.0 61 52.5
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 2.2e-06 56.6 99 38.4


User provided reference genes

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