Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14550 Schrenkiella parvula HOM05D004149 ORTHO05D005028 7.9e-118 427.2 223 100.0
Thhalv10010643m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 8.5e-96 354.0 224 81.2
CARHR272500 Cardamine hirsuta HOM05D004149 ORTHO05D005028 3.2e-87 325.5 224 72.3
BraA10t43671Z Brassica rapa HOM05D004149 ORTHO05D005028 1.2e-86 323.6 228 71.5
A10p15620 Brassica napus HOM05D004149 ORTHO05D005028 1.6e-86 323.2 228 71.1
C09p50720 Brassica napus HOM05D004149 ORTHO05D005028 2.7e-86 322.4 227 71.4
Aa31LG4G16110 Aethionema arabicum HOM05D004149 ORTHO05D005028 4.7e-86 321.6 251 66.9
Sp6g20340 Schrenkiella parvula HOM05D004149 ORTHO05D005028 4.7e-86 321.6 227 70.0
AT3G47300 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.0e-85 320.5 224 76.3
Thhalv10014590m.g Eutrema salsugineum HOM05D004149 ORTHO05D005028 1.4e-85 320.1 227 70.9
AL5G26480 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 2.3e-85 319.3 224 81.2
BolC9t57922H Brassica oleracea HOM05D004149 ORTHO05D005028 2.3e-85 319.3 232 69.4
Carub.0008s1926 Capsella rubella HOM05D004149 ORTHO05D005028 2.3e-85 319.3 222 71.2
AL8G34910 Arabidopsis lyrata HOM05D004149 ORTHO05D005028 3.4e-84 315.5 225 74.2
BolC3t13864H Brassica oleracea HOM05D004149 ORTHO05D005028 9.8e-84 313.9 228 68.9
BcaB01g04503 Brassica carinata HOM05D004149 ORTHO05D005028 2.2e-83 312.8 225 69.3
C03p14190 Brassica napus HOM05D004149 ORTHO05D005028 2.8e-83 312.4 228 69.3
A03p12090 Brassica napus HOM05D004149 ORTHO05D005028 1.8e-82 309.7 224 71.0
BraA03t10521Z Brassica rapa HOM05D004149 ORTHO05D005028 1.8e-82 309.7 224 71.0
AT5G58640 Arabidopsis thaliana HOM05D004149 ORTHO05D005028 1.6e-81 306.6 226 73.0
BcaC04g19825 Brassica carinata HOM05D004149 ORTHO05D005028 6.3e-75 284.6 185 74.6
Duzib168G0285 Durio zibethinus HOM05D004149 ORTHO05D005028 6.6e-72 274.6 216 69.4
Thecc.09G299600 Theobroma cacao HOM05D004149 ORTHO05D005028 1.1e-71 273.9 215 67.9
Eucgr.B02246 Eucalyptus grandis HOM05D004149 ORTHO05D005028 8.0e-70 267.7 221 66.1
COL.COLO4_19178 Corchorus olitorius HOM05D004149 ORTHO05D005028 4.0e-69 265.4 219 66.2
Haze_24342 Corylus avellana HOM05D004149 ORTHO05D005028 6.8e-69 264.6 221 64.7
Nitab4.5_0000261g0010 Nicotiana tabacum HOM05D004149 ORTHO05D005028 6.8e-69 264.6 221 64.3
TAR633G0450 Trochodendron aralioides HOM05D004149 ORTHO05D005028 1.2e-68 263.8 221 62.0
CSS0009567 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 2.0e-68 263.1 221 64.3
Nn2g10866 Nelumbo nucifera HOM05D004149 ORTHO05D005028 2.0e-68 263.1 220 62.3
HanXRQChr13g0406611 Helianthus annuus HOM05D004149 ORTHO05D005028 2.6e-68 262.7 224 62.1
Ciclev10029239m.g Citrus clementina HOM05D004149 ORTHO05D005028 3.4e-68 262.3 220 64.1
Sopen09g001490 Solanum pennellii HOM05D004149 ORTHO05D005028 1.7e-67 260.0 221 62.9
Medtr5g071240 Medicago truncatula HOM05D004149 ORTHO05D005028 2.2e-67 259.6 225 61.8
Nitab4.5_0002020g0030 Nicotiana tabacum HOM05D004149 ORTHO05D005028 2.9e-67 259.2 221 63.3
Cfa017194 Carpinus fangiana HOM05D004149 ORTHO05D005028 3.7e-67 258.8 224 64.3
Haze_21017 Corylus avellana HOM05D004149 ORTHO05D005028 3.7e-67 258.8 224 63.8
Gohir.D09G089700 Gossypium hirsutum HOM05D004149 ORTHO05D005028 3.7e-67 258.8 213 65.3
Gorai.006G105900 Gossypium raimondii HOM05D004149 ORTHO05D005028 3.7e-67 258.8 220 63.6
PGSC0003DMG400004449 Solanum tuberosum HOM05D004149 ORTHO05D005028 3.7e-67 258.8 221 62.4
Actinidia11575 Actinidia chinensis HOM05D004149 ORTHO05D005028 4.9e-67 258.5 227 61.2
Cc06_g01230 Coffea canephora HOM05D004149 ORTHO05D005028 6.4e-67 258.1 225 56.9
Dinv14509 Davidia involucrata HOM05D004149 ORTHO05D005028 6.4e-67 258.1 221 60.2
GSVIVG01011172001 Vitis vinifera HOM05D004149 ORTHO05D005028 6.4e-67 258.1 209 65.6
ClCG10G022210 Citrullus lanatus HOM05D004149 ORTHO05D005028 8.3e-67 257.7 233 54.1
Migut.J00152 Erythranthe guttata HOM05D004149 ORTHO05D005028 8.3e-67 257.7 225 60.9
MD03G1067200 Malus domestica HOM05D004149 ORTHO05D005028 8.3e-67 257.7 214 66.4
Rhsim05G0216800 Rhododendron simsii HOM05D004149 ORTHO05D005028 8.3e-67 257.7 232 61.2
SGA_v2.0_scaffold75G25021 Striga asiatica HOM05D004149 ORTHO05D005028 8.3e-67 257.7 228 58.8
Hma1.2p1_0479F.1_g161390 Hydrangea macrophylla HOM05D004149 ORTHO05D005028 1.1e-66 257.3 220 60.9
DCAR_018696 Daucus carota HOM05D004149 ORTHO05D005028 1.4e-66 256.9 215 63.3
MELO3C009158.2 Cucumis melo HOM05D004149 ORTHO05D005028 1.8e-66 256.5 223 57.0
Psat2g057600 Pisum sativum HOM05D004149 ORTHO05D005028 1.8e-66 256.5 225 61.8
CsaV3_3G033680 Cucumis sativus L. HOM05D004149 ORTHO05D005028 7.0e-66 254.6 223 57.0
TPR.G34577 Trifolium pratense HOM05D004149 ORTHO05D005028 1.2e-65 253.8 225 60.0
Sed0021100 Sechium edule HOM05D004149 ORTHO05D005028 1.6e-65 253.4 222 56.8
CAN.G740.4 Capsicum annuum HOM05D004149 ORTHO05D005028 2.0e-65 253.1 222 59.9
Gohir.A09G089600 Gossypium hirsutum HOM05D004149 ORTHO05D005028 2.0e-65 253.1 215 65.1
CiPaw.09G210500 Carya illinoinensis HOM05D004149 ORTHO05D005028 4.6e-65 251.9 222 60.8
Manes.01G160400 Manihot esculenta HOM05D004149 ORTHO05D005028 4.6e-65 251.9 215 64.2
Lj3A951T30 Lonicera japonica HOM05D004149 ORTHO05D005028 5.9e-65 251.5 256 53.1
TWI31G0142 Tripterygium wilfordii HOM05D004149 ORTHO05D005028 5.9e-65 251.5 223 62.8
arahy.Tifrunner.gnm1.ann1.JHY1NE Arachis hypogaea HOM05D004149 ORTHO05D005028 7.8e-65 251.1 225 61.8
Lsat_1_v5_gn_5_149460 Lactuca sativa HOM05D004149 ORTHO05D005028 1.0e-64 250.8 224 56.2
FAN25G1984 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.3e-64 249.6 212 62.7
LjContig00155g0022980 Lotus japonicus HOM05D004149 ORTHO05D005028 2.3e-64 249.6 212 62.3
QL07p035253 Quercus lobata HOM05D004149 ORTHO05D005028 3.0e-64 249.2 225 56.0
MD11G1071900 Malus domestica HOM05D004149 ORTHO05D005028 3.9e-64 248.8 216 63.4
Potri.009G047000 Populus trichocarpa HOM05D004149 ORTHO05D005028 3.9e-64 248.8 213 63.4
unitig_578.g15899 Utricularia gibba HOM05D004149 ORTHO05D005028 3.9e-64 248.8 222 55.4
arahy.Tifrunner.gnm1.ann1.AG3942 Arachis hypogaea HOM05D004149 ORTHO05D005028 6.6e-64 248.1 224 61.2
arahy.Tifrunner.gnm1.ann1.43A4DE Arachis hypogaea HOM05D004149 ORTHO05D005028 8.6e-64 247.7 223 60.1
Prupe.6G055700 Prunus persica HOM05D004149 ORTHO05D005028 1.1e-63 247.3 225 60.9
arahy.Tifrunner.gnm1.ann1.CPEN6V Arachis hypogaea HOM05D004149 ORTHO05D005028 2.5e-63 246.1 229 59.8
Lalb_Chr07g0193651 Lupinus albus HOM05D004149 ORTHO05D005028 4.3e-63 245.4 223 57.0
FAN16G0525 Fragaria x ananassa HOM05D004149 ORTHO05D005028 7.3e-63 244.6 211 62.6
Potri.001G253000 Populus trichocarpa HOM05D004149 ORTHO05D005028 7.3e-63 244.6 222 59.9
RcHm_v2.0_Chr5g0070001 Rosa chinensis HOM05D004149 ORTHO05D005028 9.5e-63 244.2 215 62.8
Cpa.g.sc112.1 Carica papaya HOM05D004149 ORTHO05D005028 1.2e-62 243.8 167 69.5
QL01p038648 Quercus lobata HOM05D004149 ORTHO05D005028 1.2e-62 243.8 225 60.9
FvH4_3g38810 Fragaria vesca HOM05D004149 ORTHO05D005028 2.1e-62 243.0 211 62.1
Sabra16G0113700 Salix brachista HOM05D004149 ORTHO05D005028 2.1e-62 243.0 216 55.6
VMungo0331G2046 Vigna mungo HOM05D004149 ORTHO05D005028 2.1e-62 243.0 221 57.9
Potri.016G117600 Populus trichocarpa HOM05D004149 ORTHO05D005028 2.8e-62 242.7 216 55.6
Aqoxy4G02534 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 3.6e-62 242.3 226 57.5
Glyma.03G056500 Glycine max HOM05D004149 ORTHO05D005028 3.6e-62 242.3 222 57.2
PGR102G2658 Punica granatum HOM05D004149 ORTHO05D005028 4.7e-62 241.9 221 62.0
Glyma.14G194500 Glycine max HOM05D004149 ORTHO05D005028 1.0e-61 240.7 244 57.0
Prupe.6G279000 Prunus persica HOM05D004149 ORTHO05D005028 1.0e-61 240.7 218 55.0
PSO339G1238 Papaver somniferum HOM05D004149 ORTHO05D005028 1.4e-61 240.4 221 53.4
Phvul.010G076100 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 1.4e-61 240.4 219 57.5
ECA248G2679 Erigeron canadensis HOM05D000014 ORTHO05D000093 1.8e-61 240.0 223 57.8
Lalb_Chr10g0103381 Lupinus albus HOM05D004149 ORTHO05D005028 2.3e-61 239.6 216 63.4
PSO384G4313 Papaver somniferum HOM05D004149 ORTHO05D005028 4.0e-61 238.8 221 52.9
Lalb_Chr04g0252201 Lupinus albus HOM05D004149 ORTHO05D005028 6.8e-61 238.0 219 61.2
ATR0681G135 Amborella trichopoda HOM05D004149 ORTHO05D005028 1.5e-60 236.9 224 56.7
Lj3g0002740 Lotus japonicus HOM05D004149 ORTHO05D005028 1.5e-60 236.9 224 59.4
Sc22g0002520 Simmondsia chinensis HOM05D004149 ORTHO05D005028 2.0e-60 236.5 225 58.2
Glyma.02G227600 Glycine max HOM05D004149 ORTHO05D005028 2.9e-59 232.6 232 56.5
MD12G1168700 Malus domestica HOM05D004149 ORTHO05D005028 2.9e-59 232.6 215 53.0
Sabra09G0034400 Salix brachista HOM05D004149 ORTHO05D005028 2.9e-59 232.6 259 52.5
VMungo0647G1724 Vigna mungo HOM05D004149 ORTHO05D005028 2.9e-59 232.6 246 53.3
Phvul.008G260400 Phaseolus vulgaris HOM05D004149 ORTHO05D005028 2.4e-58 229.6 246 52.8
Atru.chr3.4194 Acer truncatum HOM05D004149 ORTHO05D005028 9.2e-58 227.6 162 66.0
EL10Ac5g12549 Beta vulgaris HOM05D004149 ORTHO05D005028 1.2e-57 227.3 225 56.9
HPP92_017934 Vanilla planifolia HOM05D004149 ORTHO05D005028 4.6e-57 225.3 229 55.9
Carub.0005s1339 Capsella rubella HOM05D004149 ORTHO05D005028 7.8e-57 224.6 133 84.2
RcHm_v2.0_Chr3g0462841 Rosa chinensis HOM05D004149 ORTHO05D005028 7.8e-57 224.6 217 57.1
SHI31752 Sapria himalayana HOM05D004149 ORTHO05D005028 2.3e-56 223.0 229 55.9
Ah.12g058720 Amaranthus hybridus HOM05D004149 ORTHO05D005028 3.0e-56 222.6 225 57.3
Medtr4g015610 Medicago truncatula HOM05D004149 ORTHO05D005028 5.0e-56 221.9 224 57.1
Hund14286 Selenicereus undatus HOM05D004149 ORTHO05D005028 6.6e-56 221.5 227 58.1
CDE03G0191 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 8.6e-56 221.1 215 55.3
Ca_20283_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.6e-56 221.1 221 57.5
TPR.G13346 Trifolium pratense HOM05D004149 ORTHO05D005028 8.6e-56 221.1 222 55.0
FvH4_6g11300 Fragaria vesca HOM05D004149 ORTHO05D005028 1.1e-55 220.7 219 49.8
FAN14G0231 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-55 220.7 219 49.8
FAN14G3883 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-55 220.7 219 49.8
CANSAT54G2318 Cannabis sativa HOM05D004149 ORTHO05D005028 2.5e-55 219.5 251 49.8
Cfa011711 Carpinus fangiana HOM05D004149 ORTHO05D005028 2.5e-55 219.5 162 64.2
Os01g0832200 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 3.3e-55 219.2 224 51.8
Psat7g245760 Pisum sativum HOM05D004149 ORTHO05D005028 3.3e-55 219.2 218 57.3
FAN05G2859 Fragaria x ananassa HOM05D004149 ORTHO05D005028 4.3e-55 218.8 219 48.9
Zm00001eb368380 Zea mays HOM05D004149 ORTHO05D005028 4.7e-54 215.3 210 53.3
Manes.09G107600 Manihot esculenta HOM05D004149 ORTHO05D005028 6.2e-54 214.9 203 56.2
Zm00001eb351750 Zea mays HOM05D004149 ORTHO05D005028 8.1e-54 214.5 241 50.6
CDE04G2602 Ceratophyllum demersum HOM05D004149 ORTHO05D005028 1.1e-53 214.2 217 51.2
FAN09G2001 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-53 214.2 219 48.9
SEGI_37457 Sequoiadendron giganteum HOM05D004149 ORTHO05D005028 1.3e-51 207.2 226 50.4
Lj2C73G10 Lonicera japonica HOM05D004149 ORTHO05D005028 2.2e-51 206.5 266 45.9
Os05g0467300 Oryza sativa ssp. japonica HOM05D004149 ORTHO05D005028 2.9e-51 206.1 245 51.0
CiPaw.14G058300 Carya illinoinensis HOM05D004149 ORTHO05D005028 1.9e-50 203.4 197 58.4
Peaxi162Scf00170g00124 Petunia axillaris HOM05D004149 ORTHO05D005028 1.6e-49 200.3 138 68.1
Dinv14507 Davidia involucrata HOM05D011585 ORTHO05D005028 3.9e-48 195.7 142 63.4
FAN11G2604 Fragaria x ananassa HOM05D004149 ORTHO05D005028 2.8e-46 189.5 261 46.0
Dinv03100 Davidia involucrata HOM05D004149 ORTHO05D005028 3.6e-46 189.1 120 72.5
FAN21G1905 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.7e-43 180.3 121 71.1
Ca_05615_v3 Cicer arietinum L. HOM05D004149 ORTHO05D005028 8.4e-43 177.9 133 63.2
CSS0016200 Camellia sinensis var. sinensis HOM05D004149 ORTHO05D005028 1.9e-42 176.8 130 66.2
AUR62030494 Chenopodium quinoa HOM05D004149 ORTHO05D005028 5.4e-42 175.3 140 60.0
AUR62030801 Chenopodium quinoa HOM05D004149 ORTHO05D005028 9.2e-42 174.5 235 46.8
MBI15_g14842_MAGBIO Magnolia biondii HOM05D004149 ORTHO05D005028 1.6e-41 173.7 132 59.1
Ciclev10013383m.g Citrus clementina HOM05D004149 ORTHO05D005028 4.6e-41 172.2 132 59.1
Actinidia29092 Actinidia chinensis HOM05D004149 ORTHO05D005028 5.1e-40 168.7 175 50.3
SMO358G0328 Selaginella moellendorffii HOM05D004149 ORTHO05D005028 5.1e-40 168.7 149 54.4
Psat7g245800 Pisum sativum HOM05D004149 ORTHO05D005028 8.9e-37 157.9 122 62.3
Solyc09g005590.3 Solanum lycopersicum HOM05D004149 ORTHO05D005028 6.2e-30 135.2 90 67.8
Atru.chr8.2258 Acer truncatum HOM05D004149 ORTHO05D005028 1.3e-27 127.5 91 63.7
vmacro20289 Vaccinium macrocarpon HOM05D004149 ORTHO05D005028 4.2e-26 122.5 131 51.1
FAN02G4186 Fragaria x ananassa HOM05D004149 ORTHO05D005028 1.1e-23 114.4 228 34.6
MD03G1067500 Malus domestica HOM05D004149 ORTHO05D005028 7.4e-23 111.7 71 76.1
C07p23840 Brassica napus HOM05D004149 ORTHO05D005028 8.1e-22 108.2 79 65.8
Sed0020125 Sechium edule HOM05D004149 ORTHO05D005028 3.4e-20 102.8 219 28.8
MD04G1155500 Malus domestica HOM05D004149 ORTHO05D005028 9.9e-20 101.3 122 45.9
BcaB01g01543 Brassica carinata HOM05D004149 ORTHO05D039425 6.4e-19 98.6 72 69.4
Cre14.g616950 Chlamydomonas reinhardtii HOM05D004149 ORTHO05D005028 1.4e-18 97.4 124 38.7
BcaC02g09351 Brassica carinata HOM05D004149 ORTHO05D094654 3.3e-15 86.3 73 63.0
PRCOL_00001680 Prasinoderma coloniale HOM05D004149 ORTHO05D005028 9.6e-15 84.7 102 42.2
MCO12G475 Micromonas commoda HOM05D004149 ORTHO05D005028 1.3e-14 84.3 134 33.6
Solyc09g005580.4 Solanum lycopersicum HOM05D004149 ORTHO05D005028 8.1e-14 81.6 97 55.7
Aqoxy2G00865 Aquilegia oxysepala HOM05D004149 ORTHO05D005028 2.4e-13 80.1 174 34.5
CBR_g34707 Chara braunii HOM05D004149 ORTHO05D005028 5.8e-12 75.5 116 35.3
BcaB06g29604 Brassica carinata HOM05D004149 ORTHO05D039425 2.9e-11 73.2 52 67.3
BcaB07g33953 Brassica carinata HOM05D004149 ORTHO05D095923 2.3e-08 63.5 47 66.0
MSTRG.19005 Avicennia marina HOM05D004149 ORTHO05D005028 8.7e-08 61.6 85 48.2
GSVIVG01032328001 Vitis vinifera HOM05D004149 ORTHO05D005028 3.3e-07 59.7 95 49.5
GSVIVG01000345001 Vitis vinifera HOM05D000200 ORTHO05D011629 9.6e-07 58.2 84 53.6
GSVIVG01030787001 Vitis vinifera HOM05D004149 ORTHO05D005028 1.6e-06 57.4 94 44.7


User provided reference genes

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