Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g14000 Schrenkiella parvula HOM05D005796 ORTHO05D007054 7.7e-141 503.8 257 100.0
BcaB05g22893 Brassica carinata HOM05D005796 ORTHO05D007054 5.2e-113 411.4 259 81.9
C01p32410 Brassica napus HOM05D005796 ORTHO05D007054 3.7e-111 405.2 259 80.7
CARHR156700 Cardamine hirsuta HOM05D005796 ORTHO05D007054 1.1e-110 403.7 259 79.5
A01p25720 Brassica napus HOM05D005796 ORTHO05D007054 1.4e-110 403.3 259 79.9
BolC1t03180H Brassica oleracea HOM05D005796 ORTHO05D007054 1.4e-110 403.3 259 80.3
BraA01t02488Z Brassica rapa HOM05D005796 ORTHO05D007054 4.1e-110 401.7 259 79.5
AT3G47980 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 7.0e-110 401.0 259 81.5
BraA06t25046Z Brassica rapa HOM05D005796 ORTHO05D007054 9.1e-110 400.6 259 82.2
Carub.0005s1409 Capsella rubella HOM05D005796 ORTHO05D007054 1.0e-108 397.1 260 80.8
AL5G27300 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 2.9e-108 395.6 259 79.9
A06p19660 Brassica napus HOM05D005796 ORTHO05D007054 5.0e-108 394.8 259 81.5
Thhalv10010656m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 6.1e-98 361.3 259 78.0
AL8G39690 Arabidopsis lyrata HOM05D005796 ORTHO05D007054 4.1e-86 322.0 259 68.3
Carub.0008s2345 Capsella rubella HOM05D005796 ORTHO05D007054 5.4e-86 321.6 259 68.0
BcaB01g00857 Brassica carinata HOM05D005796 ORTHO05D007054 9.2e-86 320.9 209 80.9
AT5G62720 Arabidopsis thaliana HOM05D005796 ORTHO05D007054 4.6e-85 318.5 259 66.8
BcaC09g49836 Brassica carinata HOM05D005796 ORTHO05D007054 7.8e-85 317.8 209 79.9
CARHR276510 Cardamine hirsuta HOM05D005796 ORTHO05D007054 6.6e-84 314.7 259 67.6
Thhalv10004798m.g Eutrema salsugineum HOM05D005796 ORTHO05D007054 1.6e-82 310.1 263 65.8
BcaB02g09686 Brassica carinata HOM05D005796 ORTHO05D007054 3.6e-82 308.9 262 65.3
BolC9t53794H Brassica oleracea HOM05D005796 ORTHO05D007054 2.3e-81 306.2 261 63.6
Aa31LG11G960 Aethionema arabicum HOM05D005796 ORTHO05D007054 5.2e-81 305.1 262 65.3
BraA06t25896Z Brassica rapa HOM05D005796 ORTHO05D007054 5.2e-81 305.1 262 64.1
BcaC04g23395 Brassica carinata HOM05D005796 ORTHO05D007054 6.8e-81 304.7 262 64.5
BcaNung01383 Brassica carinata HOM05D005796 ORTHO05D007054 1.3e-79 300.4 249 66.3
BcaC01g02511 Brassica carinata HOM05D005796 ORTHO05D007054 2.9e-79 299.3 262 63.4
BolC3t18656H Brassica oleracea HOM05D005796 ORTHO05D007054 2.9e-79 299.3 262 63.4
Sp2g25890 Schrenkiella parvula HOM05D005796 ORTHO05D007054 4.9e-79 298.5 261 65.1
A09p07830 Brassica napus HOM05D005796 ORTHO05D007054 3.2e-78 295.8 262 63.0
BraA09t36434Z Brassica rapa HOM05D005796 ORTHO05D007054 3.2e-78 295.8 262 63.0
BcaNung07157 Brassica carinata HOM05D005796 ORTHO05D007054 3.3e-75 285.8 209 75.1
THA.LOC104821456 Tarenaya hassleriana HOM05D005796 ORTHO05D007054 4.3e-75 285.4 261 62.8
A06p29510 Brassica napus HOM05D000012 ORTHO05D002455 5.6e-75 285.0 250 63.6
C03p64010 Brassica napus HOM05D000012 ORTHO05D002455 6.2e-74 281.6 250 62.8
BcaB02g09676 Brassica carinata HOM05D005796 ORTHO05D007054 3.4e-72 275.8 247 62.8
TAR481G0014 Trochodendron aralioides HOM05D005796 ORTHO05D007054 5.8e-72 275.0 222 64.4
GSVIVG01008066001 Vitis vinifera HOM05D005796 ORTHO05D007054 9.9e-72 274.2 196 68.4
Thecc.03G078500 Theobroma cacao HOM05D005796 ORTHO05D007054 1.3e-71 273.9 231 60.6
Gohir.A07G065400 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.2e-71 273.1 193 69.9
Actinidia04922 Actinidia chinensis HOM05D005796 ORTHO05D007054 2.9e-71 272.7 246 56.1
Dinv38663 Davidia involucrata HOM05D005796 ORTHO05D007054 3.8e-71 272.3 196 68.4
Gorai.001G073800 Gossypium raimondii HOM05D005796 ORTHO05D007054 3.8e-71 272.3 193 69.9
TWI60G1143 Tripterygium wilfordii HOM05D005796 ORTHO05D007054 3.8e-71 272.3 207 65.7
Manes.14G074300 Manihot esculenta HOM05D005796 ORTHO05D007054 4.9e-71 271.9 178 71.3
Cc04_g15610 Coffea canephora HOM05D005796 ORTHO05D007054 8.4e-71 271.2 201 65.7
MD06G1187500 Malus domestica HOM05D005796 ORTHO05D007054 1.4e-70 270.4 203 66.0
Aa31LG4G16620 Aethionema arabicum HOM05D005796 ORTHO05D007054 7.1e-70 268.1 208 71.6
MD14G1193900 Malus domestica HOM05D005796 ORTHO05D007054 7.1e-70 268.1 196 67.3
Prupe.5G185800 Prunus persica HOM05D005796 ORTHO05D007054 9.2e-70 267.7 200 65.5
Duzib084G0674 Durio zibethinus HOM05D005796 ORTHO05D007054 1.2e-69 267.3 193 66.8
Nitab4.5_0005402g0010 Nicotiana tabacum HOM05D005796 ORTHO05D007054 1.6e-69 266.9 196 66.3
CiPaw.11G037800 Carya illinoinensis HOM05D005796 ORTHO05D007054 2.1e-69 266.5 200 65.5
SGA_v2.0_scaffold7G04086 Striga asiatica HOM05D005796 ORTHO05D007054 2.1e-69 266.5 214 63.6
Sopen03g032340 Solanum pennellii HOM05D005796 ORTHO05D007054 2.7e-69 266.2 167 74.3
RcHm_v2.0_Chr7g0180561 Rosa chinensis HOM05D005796 ORTHO05D007054 3.5e-69 265.8 167 75.4
Ciclev10021819m.g Citrus clementina HOM05D005796 ORTHO05D007054 4.6e-69 265.4 191 67.5
Nitab4.5_0004605g0110 Nicotiana tabacum HOM05D005796 ORTHO05D007054 4.6e-69 265.4 197 67.5
Atru.chr9.2321 Acer truncatum HOM05D005796 ORTHO05D007054 7.8e-69 264.6 240 59.2
Hma1.2p1_0002F.1_g003270 Hydrangea macrophylla HOM05D005796 ORTHO05D007054 7.8e-69 264.6 246 56.1
Peaxi162Scf00009g00426 Petunia axillaris HOM05D005796 ORTHO05D007054 7.8e-69 264.6 167 74.9
CANSAT80G0862 Cannabis sativa HOM05D005796 ORTHO05D007054 2.3e-68 263.1 170 71.8
MSTRG.4407 Avicennia marina HOM05D005796 ORTHO05D007054 3.0e-68 262.7 178 70.8
FAN13G2643 Fragaria x ananassa HOM05D005796 ORTHO05D007054 3.0e-68 262.7 167 74.9
Solyc03g113280.3 Solanum lycopersicum HOM05D005796 ORTHO05D007054 3.0e-68 262.7 167 73.1
AUR62008352 Chenopodium quinoa HOM05D005796 ORTHO05D007054 6.6e-68 261.5 182 68.1
Migut.D01857 Erythranthe guttata HOM05D005796 ORTHO05D007054 6.6e-68 261.5 178 68.5
Potri.015G065500 Populus trichocarpa HOM05D005796 ORTHO05D007054 6.6e-68 261.5 179 69.3
EL10Ac5g10940 Beta vulgaris HOM05D005796 ORTHO05D007054 1.9e-67 260.0 192 65.1
PSO017G2472 Papaver somniferum HOM05D005796 ORTHO05D007054 5.6e-67 258.5 192 66.7
DCAR_026077 Daucus carota HOM05D005796 ORTHO05D007054 7.3e-67 258.1 208 63.9
arahy.Tifrunner.gnm1.ann1.U2VSD4 Arachis hypogaea HOM05D005796 ORTHO05D007054 9.6e-67 257.7 198 66.2
HanXRQChr02g0045201 Helianthus annuus HOM05D005796 ORTHO05D007054 9.6e-67 257.7 167 73.1
arahy.Tifrunner.gnm1.ann1.NXA9BP Arachis hypogaea HOM05D005796 ORTHO05D007054 1.6e-66 256.9 198 65.7
PGSC0003DMG400025332 Solanum tuberosum HOM05D005796 ORTHO05D007054 1.6e-66 256.9 167 71.9
CsaV3_1G007940 Cucumis sativus L. HOM05D005796 ORTHO05D007054 2.1e-66 256.5 240 57.9
Lalb_Chr13g0303431 Lupinus albus HOM05D005796 ORTHO05D007054 2.1e-66 256.5 214 61.7
ClCG01G014370 Citrullus lanatus HOM05D005796 ORTHO05D007054 2.8e-66 256.1 166 73.5
MELO3C002210.2 Cucumis melo HOM05D005796 ORTHO05D007054 3.6e-66 255.8 231 60.2
PSO478G3339 Papaver somniferum HOM05D005796 ORTHO05D007054 3.6e-66 255.8 192 66.1
FAN08G2559 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.7e-66 255.4 183 68.3
Sc12g0006170 Simmondsia chinensis HOM05D005796 ORTHO05D007054 4.7e-66 255.4 195 66.2
FAN18G3372 Fragaria x ananassa HOM05D005796 ORTHO05D007054 6.2e-66 255.0 183 68.3
Cpa.g.sc414.2 Carica papaya HOM05D005796 ORTHO05D007054 1.8e-65 253.4 195 65.6
Hund02671 Selenicereus undatus HOM05D005796 ORTHO05D007054 2.4e-65 253.1 184 66.8
FAN04G0326 Fragaria x ananassa HOM05D005796 ORTHO05D007054 4.0e-65 252.3 213 60.6
ECA247G3495 Erigeron canadensis HOM05D005796 ORTHO05D007054 6.9e-65 251.5 168 69.6
Sed0020047 Sechium edule HOM05D005796 ORTHO05D007054 1.2e-64 250.8 198 65.7
Gohir.D07G069900 Gossypium hirsutum HOM05D005796 ORTHO05D007054 2.6e-64 249.6 193 66.3
C09p08810 Brassica napus HOM05D005796 ORTHO05D007054 7.6e-64 248.1 225 64.4
Lsat_1_v5_gn_1_10700 Lactuca sativa HOM05D005796 ORTHO05D007054 7.6e-64 248.1 185 64.9
Glyma.17G096600 Glycine max HOM05D005796 ORTHO05D007054 1.7e-63 246.9 212 59.4
Eucgr.B00422 Eucalyptus grandis HOM05D005796 ORTHO05D007054 3.8e-63 245.7 154 76.0
TPR.G38380 Trifolium pratense HOM05D005796 ORTHO05D007054 4.9e-63 245.4 167 68.3
MBI03_g20464_MAGBIO Magnolia biondii HOM05D005796 ORTHO05D007054 3.2e-62 242.7 166 71.1
Aqoxy3G00785 Aquilegia oxysepala HOM05D005796 ORTHO05D007054 4.2e-62 242.3 192 63.0
VMungo1215G0702 Vigna mungo HOM05D005796 ORTHO05D007054 4.2e-62 242.3 178 65.2
Oeu048731.1 Olea europaea HOM05D005796 ORTHO05D007054 9.3e-62 241.1 164 69.5
ATR0665G316 Amborella trichopoda HOM05D005796 ORTHO05D007054 1.2e-61 240.7 182 63.7
Ca_21851_v3 Cicer arietinum L. HOM05D005796 ORTHO05D007054 2.7e-61 239.6 167 66.5
Phvul.003G193000 Phaseolus vulgaris HOM05D005796 ORTHO05D007054 1.7e-60 236.9 178 64.0
Medtr4g107630 Medicago truncatula HOM05D005796 ORTHO05D007054 3.9e-60 235.7 167 66.5
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 2.5e-59 233.0 167 63.5
unitig_0.g783 Utricularia gibba HOM05D005796 ORTHO05D007054 5.6e-59 231.9 168 63.7
CDE02G2117 Ceratophyllum demersum HOM05D005796 ORTHO05D007054 9.6e-59 231.1 194 62.4
Lj4g0017253 Lotus japonicus HOM05D005796 ORTHO05D007054 3.6e-58 229.2 192 56.8
Sabra15G0090700 Salix brachista HOM05D005796 ORTHO05D007054 1.4e-57 227.3 154 70.8
AUR62021745 Chenopodium quinoa HOM05D005796 ORTHO05D007054 1.2e-56 224.2 144 75.0
Os03g0684700 Oryza sativa ssp. japonica HOM05D005796 ORTHO05D007054 5.8e-56 221.9 154 68.8
vmacro19431 Vaccinium macrocarpon HOM05D005796 ORTHO05D007054 2.9e-55 219.5 218 52.8
SEGI_40570 Sequoiadendron giganteum HOM05D005796 ORTHO05D007054 1.2e-53 214.2 192 54.7
Haze_07383 Corylus avellana HOM05D005796 ORTHO05D007054 1.3e-52 210.7 160 66.9
PGR083G2169 Punica granatum HOM05D005796 ORTHO05D007054 1.9e-51 206.8 152 67.8
Zm00001eb217240 Zea mays HOM05D005796 ORTHO05D007054 4.8e-50 202.2 251 47.4
COL.COLO4_37386 Corchorus olitorius HOM05D005796 ORTHO05D007054 4.5e-48 195.7 124 75.0
SalBow7G0869 Salvia bowleyana HOM05D005796 ORTHO05D007054 7.1e-46 188.3 152 62.5
PGR083G0992 Punica granatum HOM05D005796 ORTHO05D007054 1.0e-44 184.5 134 69.4
Lj9A459G48 Lonicera japonica HOM05D005796 ORTHO05D007054 2.3e-44 183.3 128 69.5
SMO356G0151 Selaginella moellendorffii HOM05D005796 ORTHO05D007054 1.8e-41 173.7 139 59.7
Mapoly0029s0058 Marchantia polymorpha HOM05D005796 ORTHO05D007054 9.0e-41 171.4 155 52.3
AagrBONN_evm.TU.Sc2ySwM_228.2536 Anthoceros agrestis HOM05D005796 ORTHO05D007054 8.4e-39 164.9 157 52.2
QL10p015509 Quercus lobata HOM05D005796 ORTHO05D007054 5.1e-36 155.6 95 78.9
Sabra12G0050500 Salix brachista HOM05D005796 ORTHO05D007054 1.0e-31 141.4 154 53.9
Zm00001eb053360 Zea mays HOM05D005796 ORTHO05D007054 1.0e-31 141.4 104 64.4
BcaC01g01754 Brassica carinata HOM05D005796 ORTHO05D007054 5.0e-31 139.0 115 69.6
C03p72260 Brassica napus HOM05D005796 ORTHO05D007054 5.0e-31 139.0 115 69.6
BolC3t19521H Brassica oleracea HOM05D005796 ORTHO05D007054 5.0e-31 139.0 115 69.6
CAN.G4519.1 Capsicum annuum HOM05D005796 ORTHO05D007054 3.0e-28 129.8 82 74.4
FvH4_5g15530 Fragaria vesca HOM05D005796 ORTHO05D007054 7.2e-22 108.6 109 54.1
QL10p015507 Quercus lobata HOM05D005796 ORTHO05D007054 9.4e-22 108.2 81 60.5
Sed0018874 Sechium edule HOM05D005796 ORTHO05D007054 2.3e-20 103.6 155 41.3
Nn4g23032 Nelumbo nucifera HOM05D005796 ORTHO05D007054 2.6e-16 90.1 101 47.5
Glyma.05G030200 Glycine max HOM05D005796 ORTHO05D007054 3.0e-12 76.6 50 70.0
Rhsim08G0160200 Rhododendron simsii HOM05D005796 ORTHO05D007054 2.8e-10 70.1 77 48.1
C09p08830 Brassica napus HOM05D005796 ORTHO05D007054 1.9e-06 57.4 34 67.6


User provided reference genes

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