Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 0.0e+00 1313.5 647 100.0
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 0.0e+00 1215.3 651 92.5
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1206.0 649 92.0
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 0.0e+00 1204.9 647 91.0
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 0.0e+00 1203.3 647 91.0
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1201.4 650 91.8
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1199.5 650 91.5
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1197.6 648 91.7
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 0.0e+00 1190.6 661 90.2
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 0.0e+00 1189.9 647 90.0
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 0.0e+00 1185.2 647 90.1
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 0.0e+00 1181.0 659 89.8
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 0.0e+00 1164.4 647 88.4
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 5.9e-307 1057.0 652 79.0
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.6e-259 899.4 646 67.8
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 8.7e-258 893.6 649 68.6
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 1.9e-257 892.5 648 68.1
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 5.6e-257 891.0 650 68.6
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.2e-256 889.8 650 67.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 3.4e-254 881.7 654 66.7
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.7e-253 879.4 650 67.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 2.2e-253 879.0 645 65.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 4.9e-253 877.9 652 65.2
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 1.3e-250 869.8 678 65.3
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.3e-250 869.8 650 66.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.0e-250 868.6 648 66.4
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 2.5e-249 865.5 642 64.8
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 9.6e-249 863.6 652 66.3
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.4e-247 859.0 653 66.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.1e-244 850.1 651 64.2
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 1.2e-243 846.7 647 64.9
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.3e-241 838.2 651 64.4
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 4.3e-241 838.2 651 64.4
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.3e-240 836.6 653 63.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.1e-239 832.0 654 63.3
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.9e-238 827.0 650 64.6
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.3e-237 826.6 653 62.3
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 2.4e-236 822.4 645 62.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 1.8e-234 816.2 641 63.2
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 2.3e-234 815.8 649 62.2
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 8.7e-234 813.9 654 62.2
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.5e-233 812.4 654 62.1
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 4.3e-233 811.6 646 61.8
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 4.3e-233 811.6 611 64.0
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.6e-232 809.7 645 61.6
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 2.1e-232 809.3 654 61.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 8.2e-232 807.4 645 62.2
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 9.0e-231 803.9 656 60.8
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 1.2e-230 803.5 658 62.2
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 2.0e-230 802.7 654 61.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-230 801.6 647 61.2
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 4.5e-230 801.6 647 61.2
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.0e-229 800.4 647 60.9
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.0e-229 800.4 653 60.2
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.5e-228 795.8 640 63.4
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.2e-227 793.5 665 61.2
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 6.0e-227 791.2 656 60.7
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 5.1e-226 788.1 628 63.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.1e-225 786.9 646 61.0
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.1e-225 786.9 616 63.6
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.9e-225 786.2 646 60.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.3e-225 785.4 655 60.3
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 2.2e-224 782.7 653 60.9
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 6.3e-224 781.2 658 60.2
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.4e-223 780.0 656 60.1
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.8e-223 779.6 640 61.7
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.1e-223 778.5 656 60.4
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.0e-221 773.9 656 59.9
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 2.9e-221 772.3 539 70.3
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 3.8e-221 771.9 646 60.5
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 1.4e-220 770.0 645 59.5
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 9.4e-220 767.3 653 60.2
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.4e-218 763.5 660 58.3
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.8e-218 763.1 609 63.1
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.9e-218 761.9 655 60.3
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.9e-218 761.9 654 60.1
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.1e-217 760.4 648 59.7
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.7e-216 756.5 654 58.4
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.8e-216 755.7 657 58.9
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 7.4e-209 731.1 672 56.8
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 6.5e-205 718.0 648 56.9
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.5e-204 716.1 654 55.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 7.2e-204 714.5 645 56.6
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 3.6e-203 712.2 651 55.0
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 2.0e-193 679.9 642 54.4
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 7.7e-190 667.9 571 57.8
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.0e-178 630.9 598 53.2
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 7.0e-175 618.2 689 49.5
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.6e-171 607.1 503 60.4
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.6e-169 599.7 495 60.6
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 8.0e-163 578.2 627 52.0
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.0e-161 573.5 581 53.9
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 4.4e-153 545.8 658 47.4
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 1.0e-149 534.6 656 45.3
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 4.9e-144 515.8 473 55.6
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 8.7e-141 505.0 656 44.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 3.6e-139 499.6 593 46.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.2e-137 494.6 650 44.8
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 5.1e-125 452.6 543 48.1
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.6e-123 447.6 254 83.5
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 7.6e-113 412.1 389 53.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 8.8e-101 372.1 362 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 9.7e-100 368.6 631 36.9
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 9.4e-95 352.1 501 41.1
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 5.1e-93 346.3 481 42.4
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 8.2e-91 339.0 178 87.1
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 5.9e-89 332.8 296 59.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 8.0e-86 322.4 423 43.3
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.8e-77 292.4 197 72.1
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 9.5e-63 245.7 277 45.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 6.8e-53 213.0 170 64.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 8.3e-51 206.1 215 47.9
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.4e-50 204.5 103 91.3
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 2.7e-49 201.1 106 85.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 2.0e-36 158.3 502 30.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 3.7e-35 154.1 200 41.0
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 8.4e-35 152.9 137 58.4
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 6.0e-33 146.7 177 48.0
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-26 125.9 145 54.5
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 7.1e-26 123.2 58 91.4
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 3.5e-25 120.9 85 69.4
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 3.5e-25 120.9 76 77.6
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.5e-25 120.9 83 68.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.9e-23 115.2 154 45.5
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.8e-21 108.6 97 54.6
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.7e-17 94.7 76 60.5
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 4.6e-17 94.0 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 6.0e-17 93.6 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.3e-16 91.7 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 3.0e-16 91.3 74 59.5
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 8.7e-16 89.7 44 86.4
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.9e-15 88.6 74 59.5
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 4.6e-09 67.4 91 46.2
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 1.3e-08 65.9 100 43.0
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 2.3e-08 65.1 93 43.0
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 5.1e-08 63.9 93 41.9


User provided reference genes

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