Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1990.7 1017 100.0
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1805.0 1017 90.8
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1775.0 1017 89.1
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1765.7 1017 88.7
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1760.7 1015 88.6
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1759.2 1015 88.6
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1758.0 1017 88.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1752.3 1024 88.3
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1748.8 1018 87.9
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1739.2 1035 86.7
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1729.5 1023 87.6
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 0.0e+00 1680.2 1017 85.5
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1452.2 1020 72.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1198.3 1020 61.5
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1193.7 1020 61.2
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1021 60.7
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1020 61.0
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1164.8 1028 59.4
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1164.4 1027 59.3
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1157.5 1027 59.1
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1156.4 1021 59.3
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1154.8 1017 59.9
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1140.2 1028 58.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1132.5 1027 58.1
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1121.3 1026 58.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1120.9 1029 56.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1119.4 1039 57.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1119.0 1063 56.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1111.3 1023 56.9
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1109.7 1023 57.8
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1109.7 1033 56.5
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1105.1 1017 56.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1103.6 1032 56.3
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1101.3 999 57.6
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1082.4 1028 56.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1081.2 1028 56.0
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1081.2 1025 56.0
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1020 55.3
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1078.2 990 56.2
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 7.0e-312 1074.7 1030 55.4
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 7.0e-312 1073.9 1015 55.8
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 4.9e-311 1071.2 1024 56.0
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 8.3e-311 1070.5 1019 56.0
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.8e-310 1069.3 1023 55.4
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 2.0e-309 1065.8 1024 54.5
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 1.7e-308 1062.8 1022 54.4
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.8e-308 1061.6 1029 54.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 2.7e-306 1055.4 1009 56.2
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 4.6e-306 1054.7 1019 55.1
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 4.6e-306 1054.7 1011 56.3
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 3.0e-305 1052.0 1027 54.6
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 8.7e-305 1050.4 1007 55.3
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 1.6e-303 1046.2 1049 53.8
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 1.8e-302 1042.7 1058 54.1
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 2.4e-302 1042.3 1016 53.9
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 5.3e-302 1041.2 1011 56.1
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.6e-298 1029.6 1021 54.6
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 2.1e-298 1029.2 1030 53.3
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 3.0e-297 1025.4 1012 54.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 5.1e-297 1024.6 1013 54.4
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 3.3e-296 1021.9 1008 53.7
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 1.3e-295 1020.0 1081 51.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 9.0e-294 1013.8 1023 53.0
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 1.2e-293 1013.4 1051 53.0
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 5.5e-291 1004.6 908 57.7
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 1.2e-290 1003.4 1020 52.7
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 1.6e-290 1003.0 1027 52.6
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.7e-289 997.7 1016 53.1
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.3e-288 995.3 1035 51.3
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 9.7e-288 993.8 1020 52.1
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.6e-287 993.0 1020 52.2
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 1.1e-286 990.3 1033 51.6
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 5.5e-283 978.0 981 52.1
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 1.3e-279 966.8 1020 51.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.7e-279 966.5 1063 49.8
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 2.8e-279 965.7 1027 52.0
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 2.6e-277 959.1 841 59.9
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.4e-275 953.4 1025 50.7
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.4e-273 946.8 953 53.2
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 3.3e-272 942.2 1015 51.9
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.6e-269 932.6 616 78.4
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 1.7e-268 929.9 906 54.5
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 1.1e-267 927.2 983 50.4
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.7e-266 922.5 1038 48.7
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 2.3e-265 919.5 1035 50.2
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 2.8e-263 912.5 1025 50.1
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.1e-262 909.1 1036 49.8
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.8e-260 902.1 1021 48.9
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 3.8e-252 875.5 965 50.5
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.2e-251 872.5 1017 47.9
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 2.0e-240 836.6 775 58.8
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 5.4e-238 828.6 1036 47.0
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.7e-229 799.7 1023 45.8
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.6e-226 790.4 724 57.9
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.0e-184 650.6 667 54.1
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.0e-183 648.3 667 54.0
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 6.5e-167 592.4 441 70.5
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.9e-166 590.9 682 48.2
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 9.4e-158 562.0 594 49.0
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 2.1e-157 560.8 1068 34.7
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 8.5e-151 538.9 579 54.6
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 3.9e-148 530.0 1052 34.1
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 4.1e-137 493.4 531 53.5
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 4.4e-131 473.4 956 35.4
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 7.3e-118 429.5 358 62.3
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 3.2e-97 360.9 1121 28.1
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 5.1e-95 353.6 397 46.3
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 8.6e-95 352.8 1134 27.5
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 9.3e-81 306.2 360 45.3
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.0e-75 288.5 325 49.2
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.2e-56 226.1 224 50.4
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 4.8e-53 214.2 254 45.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.5e-43 182.6 557 30.0
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 4.5e-43 181.0 234 45.7
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.5e-41 174.1 149 59.1
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.8e-39 169.1 198 48.5
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.2e-29 135.6 151 45.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 7.7e-27 127.1 217 32.3
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.9e-26 125.2 422 27.3
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 4.0e-23 114.8 168 39.3
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.7e-19 102.1 78 59.0
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.9e-17 95.9 127 40.2
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 5.5e-17 94.4 218 35.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 7.2e-17 94.0 144 36.8
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 2.7e-16 92.0 77 53.2
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 8.0e-16 90.5 104 46.2
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.2e-14 86.7 66 60.6
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.5e-14 86.3 104 47.1
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 3.4e-14 85.1 399 29.6
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.7e-14 84.3 66 59.1
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.4e-12 79.7 66 51.5
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-10 72.4 66 48.5
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.9e-10 72.0 247 27.9
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.2e-08 66.6 43 67.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 1.6e-08 66.2 148 36.5
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.1e-08 65.9 50 58.0
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 8.0e-08 63.9 453 24.9
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 3.0e-07 62.0 68 42.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 3.0e-07 62.0 68 42.6


User provided reference genes

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