Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 7.6e-59 230.3 119 100.0
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 2.3e-55 218.8 119 95.0
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 5.1e-55 217.6 119 94.1
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 5.1e-55 217.6 119 94.1
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 5.1e-55 217.6 119 94.1
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 2.5e-54 215.3 121 94.2
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 2.5e-54 215.3 121 94.2
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 5.6e-54 214.2 119 95.0
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 5.6e-54 214.2 119 95.0
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 2.8e-53 211.8 121 92.6
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 2.8e-53 211.8 119 92.4
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 7.6e-51 203.8 119 92.4
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.9e-50 201.8 119 90.8
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 9.3e-49 196.8 118 89.8
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 3.0e-47 191.8 119 89.1
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 5.6e-38 161.0 91 92.3
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 6.0e-32 141.0 123 67.5
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 3.9e-31 138.3 113 64.6
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 5.1e-31 137.9 121 66.1
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.2e-29 131.0 121 58.7
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.2e-29 131.0 121 58.7
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 6.2e-29 131.0 122 59.8
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 8.2e-29 130.6 114 67.5
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.1e-28 130.2 76 93.4
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.4e-28 129.0 115 61.7
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.1e-28 128.6 115 61.7
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.0e-27 125.9 115 59.1
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 2.6e-27 125.6 86 70.9
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.4e-27 125.2 115 66.1
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 4.5e-27 124.8 114 63.2
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 7.6e-27 124.0 114 59.6
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.9e-26 122.1 111 65.8
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 5.0e-26 121.3 112 64.3
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 6.5e-26 120.9 115 60.9
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 3.2e-25 118.6 122 56.6
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.6e-24 116.3 121 53.7
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.8e-23 112.8 117 56.4
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 1.8e-23 112.8 120 53.3
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 3.0e-23 112.1 115 56.5
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 5.1e-23 111.3 121 57.0
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.5e-22 109.8 113 54.9
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.5e-22 109.8 127 55.1
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 3.3e-22 108.6 112 57.1
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 7.4e-22 107.5 114 53.5
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 1.6e-21 106.3 123 52.0
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.6e-21 106.3 121 55.4
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 2.2e-21 105.9 113 54.0
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.8e-21 105.5 131 49.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 4.8e-21 104.8 115 52.2
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 1.1e-20 103.6 116 52.6
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.8e-20 102.8 85 67.1
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 2.4e-20 102.4 134 50.0
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.1e-20 101.7 114 54.4
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.0e-19 99.4 87 60.9
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 2.6e-19 99.0 123 52.8
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 3.4e-19 98.6 119 53.8
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 4.5e-19 98.2 113 49.6
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 7.7e-19 97.4 119 50.4
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.0e-18 97.1 113 54.0
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 1.0e-18 97.1 124 49.2
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 1.7e-18 96.3 123 51.2
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 1.1e-17 93.6 120 52.5
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.4e-17 93.2 131 48.1
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 4.2e-17 91.7 122 48.4
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 9.4e-17 90.5 124 46.8
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 1.2e-16 90.1 120 47.5
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.6e-16 89.7 113 51.3
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.1e-16 89.4 114 50.0
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 3.6e-16 88.6 113 50.4
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 4.6e-16 88.2 123 48.0
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 4.6e-16 88.2 123 48.8
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 6.1e-16 87.8 123 47.2
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 7.9e-16 87.4 94 52.1
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-15 86.7 116 50.0
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.4e-15 86.7 116 50.0
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.4e-15 86.7 116 50.0
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.4e-15 86.7 117 48.7
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.8e-15 86.3 127 44.1
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 1.8e-15 86.3 121 49.6
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 2.3e-15 85.9 113 47.8
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 2.3e-15 85.9 113 47.8
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 3.9e-15 85.1 123 46.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.9e-15 85.1 132 43.9
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 3.9e-15 85.1 124 47.6
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 6.7e-15 84.3 114 50.9
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 6.7e-15 84.3 129 44.2
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 8.8e-15 84.0 97 52.6
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 1.1e-14 83.6 123 47.2
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.5e-14 83.2 73 69.9
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 2.0e-14 82.8 113 45.1
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 2.0e-14 82.8 125 47.2
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 2.5e-14 82.4 113 46.9
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 2.5e-14 82.4 120 45.0
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 2.5e-14 82.4 100 50.0
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 3.3e-14 82.0 113 46.0
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 4.3e-14 81.6 122 44.3
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 4.3e-14 81.6 123 45.5
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 5.7e-14 81.3 122 44.3
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 5.7e-14 81.3 124 45.2
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 5.7e-14 81.3 88 52.3
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 7.4e-14 80.9 87 55.2
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 9.7e-14 80.5 88 52.3
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.3e-13 80.1 125 45.6
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.3e-13 80.1 129 45.0
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.3e-13 80.1 87 51.7
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-13 79.7 124 41.9
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 1.7e-13 79.7 124 41.9
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 1.7e-13 79.7 87 52.9
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 2.2e-13 79.3 121 46.3
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 2.2e-13 79.3 132 41.7
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 2.2e-13 79.3 124 41.9
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.8e-13 79.0 122 45.1
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 4.8e-13 78.2 88 51.1
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 6.3e-13 77.8 97 48.5
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 6.3e-13 77.8 85 54.1
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 6.3e-13 77.8 127 42.5
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.3e-13 77.8 127 42.5
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 1.1e-12 77.0 117 40.2
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 1.1e-12 77.0 85 47.1
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.8e-12 76.3 124 41.9
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.4e-12 75.9 122 44.3
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 3.1e-12 75.5 123 42.3
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 3.1e-12 75.5 110 42.7
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 5.3e-12 74.7 88 47.7
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.5e-11 73.2 87 48.3
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 4.5e-11 71.6 123 37.4
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 1.0e-10 70.5 119 41.2
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 1.3e-10 70.1 113 34.5
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 1.3e-10 70.1 81 44.4
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 2.9e-10 68.9 76 44.7
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 6.5e-10 67.8 73 45.2
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 8.5e-10 67.4 127 38.6
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.1e-09 67.0 83 47.0
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.4e-09 66.6 64 65.6
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 1.9e-09 66.2 116 37.1
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.9e-09 66.2 85 48.2
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.9e-09 66.2 76 44.7
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 2.5e-09 65.9 82 41.5
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 4.2e-09 65.1 122 34.4
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 4.2e-09 65.1 52 61.5
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 4.2e-09 65.1 123 38.2
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 5.5e-09 64.7 115 37.4
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 5.5e-09 64.7 109 37.6
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 9.4e-09 63.9 79 39.2
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 1.2e-08 63.5 115 41.7
Gohir.A11G002000 Gossypium hirsutum HOM05D000179 ORTHO05D000107 1.6e-08 63.2 114 35.1
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 2.1e-08 62.8 119 33.6
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 2.1e-08 62.8 122 37.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 3.6e-08 62.0 117 37.6
Zm00001eb085520 Zea mays HOM05D005335 ORTHO05D006472 6.1e-08 61.2 120 35.0
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.0e-07 60.5 80 45.0
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 1.8e-07 59.7 107 33.6
QL03p039252 Quercus lobata HOM05D000179 ORTHO05D000107 2.3e-07 59.3 84 39.3
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 3.9e-07 58.5 114 35.1
Glyma.05G248300 Glycine max HOM05D000179 ORTHO05D000107 6.7e-07 57.8 76 38.2
Glyma.07G107500 Glycine max HOM05D000179 ORTHO05D000107 6.7e-07 57.8 79 38.0
Thecc.02G302800 Theobroma cacao HOM05D000179 ORTHO05D000107 6.7e-07 57.8 82 39.0
Gorai.006G190500 Gossypium raimondii HOM05D000179 ORTHO05D000107 8.8e-07 57.4 122 33.6
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 1.1e-06 57.0 84 39.3
Glyma.08G056800 Glycine max HOM05D000179 ORTHO05D000107 2.6e-06 55.8 115 30.4
Sc10g0008970 Simmondsia chinensis HOM05D000179 ORTHO05D000107 2.6e-06 55.8 89 36.0
Lsat_1_v5_gn_5_34921 Lactuca sativa HOM05D000179 ORTHO05D000107 4.4e-06 55.1 74 37.8
MD06G1234600 Malus domestica HOM05D000179 ORTHO05D000107 5.7e-06 54.7 85 36.5
Os04g0386300 Oryza sativa ssp. japonica HOM05D005335 ORTHO05D006472 5.7e-06 54.7 93 36.6
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 5.7e-06 54.7 124 37.1
Glyma.09G170200 Glycine max HOM05D000179 ORTHO05D000107 7.4e-06 54.3 79 36.7
Zm00001eb037730 Zea mays HOM05D000179 ORTHO05D000107 7.4e-06 54.3 82 37.8
AL2G26780 Arabidopsis lyrata HOM05D000179 ORTHO05D000107 9.7e-06 53.9 115 30.4
Lalb_Chr05g0221461 Lupinus albus HOM05D000179 ORTHO05D000107 9.7e-06 53.9 110 32.7


User provided reference genes

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