Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.0e-41 172.2 95 100.0
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 8.8e-34 146.7 94 81.9
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-33 145.6 93 82.8
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 9.7e-33 143.3 95 78.9
A06p18160 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-32 142.9 93 80.6
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.3e-32 142.9 95 81.1
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 9.1e-31 136.7 90 78.9
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-30 136.3 85 82.4
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.6e-30 136.0 90 78.9
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 7.7e-30 133.7 86 81.4
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.3e-29 132.9 83 85.5
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.3e-29 132.9 83 85.5
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 6.5e-29 130.6 90 75.6
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 3.2e-28 128.3 90 74.4
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 3.2e-28 128.3 90 74.4
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 3.2e-28 128.3 88 76.1
BcaC07g39418 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-27 126.3 90 75.6
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 2.7e-27 125.2 92 73.9
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.2e-26 120.9 93 67.7
BcaC07g39419 Brassica carinata HOM05D003381 ORTHO05D003880 8.8e-26 120.2 85 74.1
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.4e-25 117.9 89 67.4
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 9.7e-25 116.7 92 64.1
CARHR158580 Cardamine hirsuta HOM05D003381 ORTHO05D003880 9.7e-25 116.7 90 70.0
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 9.7e-25 116.7 89 66.3
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.7e-24 115.9 93 64.5
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.7e-24 115.9 89 66.3
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 3.7e-24 114.8 92 63.0
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 3.7e-24 114.8 92 63.0
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 3.7e-24 114.8 92 63.0
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 6.3e-24 114.0 85 69.4
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 6.3e-24 114.0 85 69.4
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 1.1e-23 113.2 92 63.0
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 1.1e-23 113.2 92 63.0
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 1.4e-23 112.8 85 68.2
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.4e-23 112.8 85 68.2
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 4.1e-23 111.3 89 62.9
AL6G36260 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 4.1e-23 111.3 90 64.4
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 9.1e-23 110.2 89 64.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 5.9e-22 107.5 83 67.5
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 1.3e-21 106.3 76 69.7
Aa31LG4G18060 Aethionema arabicum HOM05D003381 ORTHO05D003880 3.8e-21 104.8 85 63.5
BcaC09g49963 Brassica carinata HOM05D003381 ORTHO05D003880 4.7e-19 97.8 70 75.7
AT3G49580 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 1.8e-18 95.9 67 76.1
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.4e-15 85.5 78 60.3
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 9.1e-15 83.6 78 57.7
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 9.1e-15 83.6 78 57.7
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.7e-14 82.0 102 45.1
A02p40150 Brassica napus HOM05D003381 ORTHO05D003880 5.9e-14 80.9 59 71.2
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 1.3e-13 79.7 94 46.8
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 2.3e-13 79.0 86 51.2
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 2.9e-13 78.6 85 50.6
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 6.5e-13 77.4 99 45.5
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.1e-12 76.6 87 49.4
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.1e-12 76.6 78 51.3
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 1.1e-12 76.6 88 50.0
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 1.9e-12 75.9 80 53.8
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 1.9e-12 75.9 80 53.8
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 3.2e-12 75.1 74 52.7
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 4.2e-12 74.7 95 47.4
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 5.5e-12 74.3 88 52.3
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 7.2e-12 73.9 93 48.4
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 7.2e-12 73.9 78 48.7
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 7.2e-12 73.9 79 49.4
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 9.5e-12 73.6 96 47.9
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 9.5e-12 73.6 83 49.4
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 1.6e-11 72.8 79 50.6
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 1.6e-11 72.8 79 50.6
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 2.1e-11 72.4 74 51.4
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 2.1e-11 72.4 78 46.2
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 3.6e-11 71.6 84 46.4
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.7e-11 71.2 73 52.1
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 4.7e-11 71.2 80 48.8
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 4.7e-11 71.2 75 50.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 1.0e-10 70.1 73 52.1
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 1.4e-10 69.7 72 52.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 1.8e-10 69.3 79 48.1
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 1.8e-10 69.3 76 46.1
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.8e-10 69.3 77 50.6
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 1.8e-10 69.3 77 50.6
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 1.8e-10 69.3 80 55.0
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 2.3e-10 68.9 79 46.8
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 2.3e-10 68.9 74 51.4
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.3e-10 68.9 77 51.9
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 3.0e-10 68.6 75 49.3
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 3.0e-10 68.6 92 46.7
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 3.0e-10 68.6 79 48.1
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 3.0e-10 68.6 90 47.8
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.0e-10 68.2 83 47.0
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 5.2e-10 67.8 88 46.6
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 6.8e-10 67.4 78 46.2
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.2e-09 66.6 90 45.6
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.5e-09 66.2 90 48.9
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.5e-09 66.2 77 50.6
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.0e-09 65.9 80 47.5
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.6e-09 65.5 88 47.7
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 2.6e-09 65.5 83 44.6
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 2.6e-09 65.5 74 45.9
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.6e-09 65.5 77 50.6
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.4e-09 65.1 90 45.6
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 3.4e-09 65.1 90 45.6
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 3.4e-09 65.1 78 44.9
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 3.4e-09 65.1 52 59.6
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 3.4e-09 65.1 74 45.9
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 3.4e-09 65.1 105 47.6
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 3.4e-09 65.1 77 50.6
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 3.4e-09 65.1 97 45.4
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 3.4e-09 65.1 77 50.6
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 4.4e-09 64.7 73 45.2
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 4.4e-09 64.7 79 46.8
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 5.7e-09 64.3 88 42.0
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 7.5e-09 63.9 89 48.3
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 9.8e-09 63.5 90 46.7
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 1.3e-08 63.2 73 50.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 1.7e-08 62.8 101 43.6
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.7e-08 62.8 52 57.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.7e-08 62.8 90 42.2
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 1.7e-08 62.8 46 58.7
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.7e-08 62.8 92 45.7
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.7e-08 62.8 73 47.9
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.2e-08 62.4 78 44.9
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 2.2e-08 62.4 89 41.6
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.2e-08 62.4 53 54.7
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 2.2e-08 62.4 74 44.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 2.2e-08 62.4 76 46.1
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 2.2e-08 62.4 79 45.6
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.8e-08 62.0 78 43.6
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 3.7e-08 61.6 87 43.7
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 3.7e-08 61.6 74 45.9
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 4.9e-08 61.2 87 42.5
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 4.9e-08 61.2 73 49.3
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 6.3e-08 60.8 86 44.2
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 6.3e-08 60.8 75 42.7
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 8.3e-08 60.5 90 43.3
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.1e-07 60.1 83 44.6
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 1.1e-07 60.1 83 44.6
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.1e-07 60.1 91 45.1
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.1e-07 60.1 61 54.1
Zm00001eb231110 Zea mays HOM05D003381 ORTHO05D003880 1.8e-07 59.3 71 50.7
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 2.4e-07 58.9 86 43.0
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 2.4e-07 58.9 86 43.0
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 2.4e-07 58.9 78 43.6
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 2.4e-07 58.9 77 45.5
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 2.4e-07 58.9 80 45.0
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 3.1e-07 58.5 88 40.9
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.1e-07 58.5 77 45.5
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 3.1e-07 58.5 86 41.9
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 4.1e-07 58.2 78 43.6
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 4.1e-07 58.2 59 47.5
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 5.4e-07 57.8 73 45.2
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 7.0e-07 57.4 90 41.1
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 9.2e-07 57.0 73 42.5
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 9.2e-07 57.0 77 46.8
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 9.2e-07 57.0 74 45.9
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 1.2e-06 56.6 84 40.5
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.2e-06 56.6 89 44.9
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.6e-06 56.2 77 45.5
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.7e-06 55.5 73 45.2
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 3.5e-06 55.1 91 36.3
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 4.5e-06 54.7 70 47.1
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 4.5e-06 54.7 86 44.2
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 4.5e-06 54.7 74 45.9
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 4.5e-06 54.7 79 41.8
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 5.9e-06 54.3 91 40.7
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 5.9e-06 54.3 74 44.6
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 7.8e-06 53.9 89 37.1


User provided reference genes

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